Scomber scombrus (Atlantic mackerel): 133979642
Help
Entry
133979642 CDS
T10651
Symbol
sf3a1
Name
(RefSeq) splicing factor 3A subunit 1
KO
K12825
splicing factor 3A subunit 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
Spliceosome [BR:
ssco03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133979642 (sf3a1)
Complex B
133979642 (sf3a1)
Complex C
U2 SnRNP specific factors
133979642 (sf3a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP21_like_P
Surp
ubiquitin
Rad60-SLD
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
133979642
NCBI-ProteinID:
XP_062274188
LinkDB
All DBs
Position
4:10017965..10023104
Genome browser
AA seq
784 aa
AA seq
DB search
MPPGPVQIVQPEPGIKNDAPPEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPSDPYHAYYRHKVNEFKEGKAQEPSAAIPKVMQQQALQQSQQLP
QKVQSQVIQETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKE
QRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLTKLKREAEHPREVMDQVRYRVEW
AKFQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARIL
IQERYEKYGESEEVEMEVESEDDDDDRQDRNEGHPSQPDQDTQVQDMDEGSDDDDDGMKA
PLPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPPITAPDEYLISPITGEKIQASKMQEH
MRIGLLDPRWLEQRDRSIRERQTEDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKI
GEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVGEDDTKEKIGPS
KPNEIHHQPPLPSSSGNMLKPSPQMHVPRPPSSMAPPVRTTLLSAVPVIPRPQVSPVVRL
GPGQVLTQMPPMIPGPRINVVPMPPSGPHIMAPRPPPMVVPTAFVPAPPVPQPPSAPAPP
AHPPPPHDDEPVSKKMKTEDNLIPEEEFLRRNKGPVAVKVQVPNMQDKTEWKLNGQVLNF
TVPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMINGSVIHLALKERG
GRKK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctgggcctgttcaaattgttcagccggagcctggcatcaagaatgacgcacca
ccagaggaaacccctgccaccaaacccatcgtcggtatcatatatccacctcccgaagtc
cgaaacattgttgacaagacagccagctttgtagccaggaatgggcctgaatttgaagca
agaatccggcagaatgaaatcaacaatccaaagtttaatttcctcaaccccagcgaccca
taccatgcctactaccgtcataaggttaatgaatttaaggagggcaaagcacaggagcca
tctgcagctatacccaaggttatgcagcagcaggcattgcagcaatcgcagcagctccct
caaaaagtgcagtcacaggtgattcaggagacagtggtacccaaagaacctcctcctgag
tttgagtttattgcagatcctccatcaatctcagcatttgatctggatgttgtcaagctg
actgcccagtttgtcgcccgcaatggtcgccagtttcttactcagctcatgcagaaagaa
cagaggaactaccagtttgacttcctgcggccgcagcacagcctcttcaactacttcacc
aaattagttgagcagtacactaagattctgatccctcctaaaggcctactgaccaagctg
aagagagaggctgagcatccaagagaggttatggaccaggtgaggtaccgtgttgaatgg
gcaaagttccaggagcgtgagagaaagaaggaggaggaggaaagagagaaagagcgggtg
gcttatgcccaaatcgactggcatgactttgtagttgttgagacggtggatttccagccc
aatgagcaaggccacttccccccacctaccacaccagaggagcttggcgctcgtatccta
atccaagagcgctatgagaagtatggagagagtgaggaagtggagatggaggttgaaagt
gaggatgacgatgatgaccgtcaggatcggaacgaaggccatccctcacagcctgatcaa
gacacacaggttcaggacatggatgagggatctgatgatgacgatgatgggatgaaggca
ccactgccaccagacaacccgatgccacccccactgcccccaactccagaccaggttatt
attcgcaaagactacgaccccaaagcttccaagcctcagcctccaatcacagctccggat
gagtacctcatctcaccaattactggtgagaagatccaagccagtaagatgcaagagcac
atgcgtattggtctgctggatccacgctggctggagcaaagggaccgcagcatcagagag
aggcagaccgaagatgaagtctacgctcctggtctggatattgagagcagcttgaaacaa
ctggccgagagacgtaccgatatcttcggtgtggaagagacagccatcggtaagaagatc
ggagaagaagaaatccagaagccagaggagaaggttacctgggacggccactcaggaagc
atggcacgtactcagcaggcagcacaggccaacatcactctacaagagcagattgaagcc
attcacaaggccaaagggctggtgggagaggatgacactaaagagaaaattggtccaagc
aagcccaatgaaattcatcaccagcctccccttccctcgtcttcaggaaatatgctcaaa
cccagtcctcagatgcatgtgcctcgcccaccctcctctatggcacccccagtgcgcacc
actcttctgtctgctgtacctgtaattccaaggccacaggtgtctcctgtggtgcgcctt
ggaccaggacaagttttaacgcaaatgcctcccatgattcctggtcctcgcatcaatgtg
gttccaatgccgccatcaggaccccacatcatggcccctagaccacctcccatggttgtc
ccaactgcatttgtccccgctcctccagtgccacaacccccaagcgctcctgcaccgcca
gctcacccacccccacctcatgatgatgagcctgtcagcaagaagatgaagacagaggac
aaccttattccagaggaggagttccttcgtagaaacaagggtcctgtggcagttaaagta
caagtccccaacatgcaggacaagaccgaatggaagctgaacggccaagtgctgaatttc
actgtccctctcacagaccaggtgtctgttattaaagtcaaaatccatgaagccacaggc
atgccagcaggaaaacagaagttgcagtatgagggcattttcatcaaggattccaactct
ctggcttattacaacatgattaatggttcagtcattcacctggcactgaaggagagaggc
ggaaggaagaagtga
DBGET
integrated database retrieval system
