Scomber scombrus (Atlantic mackerel): 133979735
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Entry
133979735 CDS
T10651
Symbol
hnf1a
Name
(RefSeq) hepatocyte nuclear factor 1-alpha
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133979735 (hnf1a)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
133979735 (hnf1a)
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Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
HTH_5
Motif
Other DBs
NCBI-GeneID:
133979735
NCBI-ProteinID:
XP_062274304
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Position
4:complement(8220716..8226325)
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AA seq
561 aa
AA seq
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MEGEERARAANARSSLTALQEQLIWALLESGLSRDILVQALGELERDRATAGAEKGEKGD
GESSEEGEMDFPPPIFRDLEKLPPEEAAKLRSEVDRLLQEDPWRVAKIVKSYMQQHNLPQ
REVVESTGLNQSHLSQHLNKGTPMKNQKRGALYTWYVKKQCEISQQFTNAKHGLGSGEDQ
GEETRKGRRNRFKWGPASLQILFHAYERQKNPSKEEREGLVDDCNRAECLQRGVSPSQLA
GLGSNLVTEVRVYNWFANRRKEEAFRHKLALDTPYGNQSTSSSNPALPHSPEHGVKYSQQ
IACETLSSVRGSGGERVGRLVISPVQLEPSHTLLETHNPKPVSSGGPLPPVSTLTSLHSL
SASPASSQGVIMASLPSIMSLGESSLFIGLASTQPQTIPVINNVGGSFTTLQPISFQQQL
HASQQQQISQQLHGHMGASPFMATMAQLPCHMYNKSDSPQYHSSSLLSQAMVITDSSSLG
TLTSLTAVRQILTADPEEQTDPSLQEESLHLQPATPVPASSESLELYPASQTTESHQSHL
LSPSPTDISSYIPTQMVSTAQ
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagagggccagggcagctaatgcgaggtcgagcctgaccgctcttcag
gagcagctgatctgggccctgctagaatccggactgtcccgggacatcctggtccaagcc
ttgggggaactggagcgagacagggcgactgctggtgcagagaagggagagaaaggagat
ggagagagctctgaagaaggagaaatggatttcccaccgcccatattccgagatttggaa
aagcttcccccagaggaggcagccaaactgaggagtgaagtcgaccggctactgcaggag
gatccctggcgtgttgcgaaaattgtgaaaagctacatgcagcagcacaaccttcctcag
agagaggtggttgaatctacaggactcaaccagtcccacctctcccagcacctcaacaaa
ggcacgccaatgaagaaccagaagagaggtgctctgtacacctggtacgtcaagaagcag
tgcgagattagccagcagttcaccaatgccaaacatggccttggatcaggggaggaccaa
ggagaggaaaccagaaaaggacggaggaacaggttcaaatggggtcctgcgtccctgcag
atcctcttccatgcatacgaacgacaaaagaaccccagcaaggaggaaagagaggggttg
gtggatgactgtaacagggcagagtgtctacagagaggggtgtctccctcccagctggct
ggcctaggctctaacctggtgacggaggtccgggtgtacaactggtttgccaaccggcgc
aaagaggaggccttccgtcataaactggcactggacacgccttacggcaaccagtctacc
tcctcttccaaccccgctctcccacatagtcctgagcacggtgtgaaatacagccaacaa
attgcatgtgaaaccctgagctcagtcaggggtagcggaggggaaagagtgggacgcctg
gtgatcagccctgtccaactggagcccagccacacactcctcgagacccacaatcccaag
ccggtgtccagcggtggcccgctgcccccagtaagcactctgacctcgctgcacagtctg
tctgcctcccccgcgtcctcgcagggcgtcatcatggcctcactgcccagcatcatgagt
ctgggagagtcctcacttttcatcggtttagcctccacccagcctcagaccataccggtc
ataaacaacgtggggggcagtttcaccactctgcagccaatctcattccagcagcagctt
cacgcctcccagcagcagcaaatatcacagcagctccacggtcacatgggtgccagtcca
ttcatggcaacaatggcacagctgccatgtcacatgtacaacaagtctgattcgccccag
taccactcatccagtctgctgtctcaagccatggtcatcactgacagcagcagcctgggg
acgctgaccagcctcactgctgtccgacagattctaacagcggatcctgaagaacagacg
gacccatccttacaggaagaatctctgcacctgcaacccgccacacctgtaccagcttcc
tccgagagcctcgagctgtaccccgcctctcagacgacagaaagccaccagtctcacctc
ctctcaccttcaccaacagacatcagctcctacattcctacacaaatggtttctactgcg
caatag
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