Scomber scombrus (Atlantic mackerel): 133979736
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Entry
133979736 CDS
T10651
Symbol
msi1b
Name
(RefSeq) RNA-binding protein Musashi homolog 1b
KO
K14411
RNA-binding protein Musashi
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133979736 (msi1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133979736 (msi1b)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133979736 (msi1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RRM_PARP14_1
NID
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
133979736
NCBI-ProteinID:
XP_062274305
LinkDB
All DBs
Position
4:8227111..8250272
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AA seq
349 aa
AA seq
DB search
METEGSQTSLSTTDSPHDPCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRS
RGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNT
TIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE
CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQTATYTSRSYAGITPGYT
YQFPEFHLERTPLLTSPHPPELTAIPLTAYGPMAAAAAAAAVVRGSTPSRTAGFLGTSSP
GPMADLYGTAGQESAVSSYLSAASPAPSTGFSHSLGGPLIATAFTNGYH
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggagacggaagggagccagaccagcctgtccaccacggactcccctcacgacccctgc
aaaatgttcataggtggactcagctggcaaacaacacaagagggtctgaaggagtacttc
tgcaagtacggcgaggtgaaggagtgtatggtgatgcgagatccggttactaagcgctcg
agggggttcggattcgtcacctttgttgatcaggccggcgtggataaagttttggcccaa
accagacatgagctggactcaaaaacaatcgatccaaaggttgcattccctcgcagggct
caacccaagttagtgacccgaaccaagaagatctttgtgggaggcctgtcggtgaacaca
actatagaggatgtcaagcagtactttgaccagtttgggaaggtcgacgatgccatgctc
atgttcgacaagaccaccaacaggcacagagggtttggctttgtgacgttcgagaacgag
gatgtggtggagaaagtgtgcgagatccacttccacgagatcaacaacaaaatggtggag
tgtaagaaagctcagcccaaggaagtgatgtcccccacgggctcagccaggggacgatct
cgggtgatgccctatggaatggacgccttcatgctgggtattggtatgctgggttatcca
ggctttcaaacagccacctacaccagtcggagctacgctggcatcacccctggatatacc
taccagttccctgagttccacttagagaggactccccttctgacttcaccccacccccct
gagctcacagccattcctctcacagcgtatggaccaatggcagcagcagcggcagcagca
gcagtagtcagaggctccaccccgtctcgcacagctggatttttgggtacgagcagcccg
gggccgatggcagacctttatggtacagccggtcaggagtcggcggtcagcagttacctc
agtgctgctagccctgccccaagcactggattcagccatagtctggggggtccgttgatt
gccacggccttcaccaacggctatcattga
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