KEGG   Scomber scombrus (Atlantic mackerel): 133979985
Entry
133979985         CDS       T10651                                 
Name
(RefSeq) protein Atg16l2
  KO
K20868  autophagy-related protein 16-2
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    133979985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssco04131]
    133979985
   03029 Mitochondrial biogenesis [BR:ssco03029]
    133979985
Membrane trafficking [BR:ssco04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    133979985
 Others
  Specific organelles associated proteins
   Auto phagosome
    133979985
Mitochondrial biogenesis [BR:ssco03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    133979985
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_Aladin ATG16 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_VPS8 WD40_RFWD3 Beta-prop_NWD2_C Beta-prop_NOL10_N Beta-prop_DCAF12 Ge1_WD40 Chibby SecA_SW Cytochrom_D1 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 133979985
NCBI-ProteinID: XP_062274526
LinkDB
Position
5:complement(34093671..34106850)
AA seq 657 aa
MTEAGRGQTAGGGPAAGDGGGHAAGDGGGHAAGDGGGPAAGDGGGHAAGDGGGHAAGDGG
GHAAGDGGGHAAGDGGGQTAGGGQTLGDRWKRHIVRQLKHRDLNQHDMFQDLICFYTRLL
QKTCLTKGILSCSIRQPSGDSSVSSLLLQNNQLKKTTGELAFQVLELQQHIQIREEELKE
QQARLGEEERQLAGAFDVHQELQGRVEQLQEENRVLKVEYDALLERQRRAESCLRDEKLR
EGHLLEDMIHLKQQAAARMNSRNERRSRAREANLRKELQTAARSKVIIDSSSSAPSSRST
SPKTSSTERGHARLFRSASATSPRILKSIKDLFEKRRGHSVCSLEEDQFGPVGICLSARV
PVRALQVLEAHEQGINAVRFSCSSDLLATGGTDRVIKLWEVRAGSLTHRATLDGSTEGIT
CIEFDPKGLRILAASYDKSALLWRLDDSVPKLTLTGHSRKVTAARFSGLHQVVTGSADRT
IRLWDLQRAACVQVVEVASYCSDLVCSENSIISGHYDSRIRVWDTRTVSCIQELPAQGRV
TSLDISSDHRQLLSCCRDDCLQLVDLRRWSNDRMCFRADGFKCGSDSTKAVISPDGCFLA
AGSADGVVYIWNVTNGNLETRLPDKHSSSISAVSWSLSGQYVVSVDKSRRAVLWSDI
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgacggaggcaggccggggacagactgcgggagggggacctgctgcgggagacggtggg
ggacatgctgcgggagacggagggggacatgctgcgggagacggagggggacctgctgcg
ggagacggagggggacatgctgcgggagacggagggggacatgctgcgggagacggaggg
ggacatgctgcgggagacggagggggacatgctgcgggagacggagggggacagactgcg
ggagggggacagactctaggagacagatggaagagacacatcgtccgacagctgaagcac
cgagacctgaaccagcacgacatgttccaggacctgatctgcttctacactcggctgttg
cagaagacgtgtctgactaaaggaatcctgagctgctccatcaggcagccctctggtgac
agcagcgtctcgtctctgctgttgcagaacaaccagctgaagaagaccaccggagagctg
gcctttcaggtgctcgaactgcagcaacacatacagatcagagaagaagaactgaaggaa
caacaagccaggctcggggaggaggagcgtcagctggcgggtgcgtttgatgtccaccag
gagctgcaggggcgggtggagcagcttcaggaggagaaccgggtgttgaaggtggagtac
gacgctctgctggagcgacagagacgagctgagtcgtgtctgagggacgagaagctgaga
gaaggacacctgctggaggacatgatccacctgaagcagcaagctgctgcacgcatgaac
agccgcaacgagaggcgctctagagctcgagaagcaaatctgaggaaagaactacagaca
gcagccaggtcaaaggtcatcatagacagctcctccagtgctccatcctccagatccacg
tctccaaagacctcgtccacagagcgaggacacgctcgtctcttcaggtcagcgtccgcc
acgtctcccaggatcctcaagtccatcaaagacctgtttgagaagaggcgtggtcactct
gtctgcagtctggaggaggatcagtttggtcctgttggaatctgtctgtcagccagagtt
cctgttagagctctgcaagtcctggaagctcatgagcaaggcatcaacgcggtgcggttc
agctgcagctcggacctgctggccaccggaggaaccgaccgggtcatcaagctgtgggag
gtccgagcaggctcgctgacccacagagcgactctggacggcagcacggagggaatcacc
tgcatcgagtttgacccaaagggtctgaggatcctcgcagcatcatacgataaatcggca
ttgttgtggcgtttggacgactctgttcccaagctgactctgacaggtcacagcaggaag
gtgacagcagcgaggttcagtggtcttcatcaggtggtgaccggcagtgccgacagaacc
atcagactgtgggacctgcagagagctgcgtgtgttcaggtagttgaagttgcgtcatac
tgcagcgatctggtctgctcagaaaacagcatcatcagcggccactatgactccaggatc
agagtctgggacaccaggacggtcagctgtatccaggagcttcctgctcagggtcgagtg
acgtcattggacatcagctccgaccatcgccagctgctcagctgttgccgtgacgactgc
ctccagctggtcgacctgaggaggtggagcaacgaccgcatgtgcttcagagcggacggc
tttaaatgtggcagcgacagcaccaaagctgtgatcagtccggacggatgtttcctggca
gccggatcagctgatggcgtcgtctacatctggaacgtcaccaacggcaacctggagacc
cgcctaccagacaagcacagctcgtccatcagcgccgtgtcctggtcgctgtccggccaa
tacgtcgtcagtgtggataaaagtaggcgggccgttctctggagtgacatctga

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