Scomber scombrus (Atlantic mackerel): 133980040
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Entry
133980040 CDS
T10651
Symbol
tsen34
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssco03016
]
133980040 (tsen34)
Enzymes [BR:
ssco01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
133980040 (tsen34)
Transfer RNA biogenesis [BR:
ssco03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
133980040 (tsen34)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSEN34_N
tRNA_int_endo
Motif
Other DBs
NCBI-GeneID:
133980040
NCBI-ProteinID:
XP_062274588
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All DBs
Position
5:32911817..32913912
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AA seq
292 aa
AA seq
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MDDPPNREEEEEESSPVVGVSLCDSAPLLWRAEDLRAVRSQGLVGALLGSLARTPRQNSR
LGRPLLLLPEEERLLTERHAAAAAPPGSKEAGGAELRQQVEQYEEEQQRSYEEQSVLALE
DRKSALCRAMTVSHKDPGGGTADEALQGRLEALDQSFTFPRSGMAVQLSTARAGLSYCPE
ARAFLQADWLMRKQDDPCGAARYQVFIDLRGRGFYLTSAGKFGGDFLVYPGDPLRFHAHF
IAVCVSLDESVCLLDVLAIARLGSNVKKTVLLCSPGADGGVAYTSLQWSGMV
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcctccgaacagagaggaggaagaggaggagtcgtccccggtggttggggtc
agcctgtgtgactccgcccccctgctgtggagggcggaggacctgcgtgcggtgaggtct
cagggcctggtgggggcgctgctggggtcgctggctcgaaccccccgacagaacagccgc
ctgggccgcccgctgctgctgctgccggaggaggagagactactgacggagcgccatgca
gccgccgccgcaccgcctgggtcaaaggaggcaggaggggcggagctccgtcagcaggtg
gagcagtatgaggaggagcagcagaggagttatgaggagcagagcgtcctcgctctggag
gacaggaagtcagcgctgtgcagagccatgacggtatcacacaaagatcctggaggtggg
accgcagatgaggccctgcagggccgcctggaggccctggaccagagctttaccttccct
cggtccgggatggcggtccagctgagcacggcgagggcaggactatcgtactgccccgag
gcccgggccttcctgcaggctgattggctgatgagaaagcaggacgacccatgcggcgcc
gccaggtaccaggtgttcatagacctgagggggcggggcttctacctgacctcagcgggg
aagttcggaggagacttcctcgtctatccaggcgaccctcttcgtttccacgctcatttc
atcgccgtctgtgtgtctctggacgagtccgtctgcctgctcgacgtcctcgccatcgct
cgtctgggatccaacgtgaagaagacggtcctgctctgctcgccaggggcagacggagga
gtggcgtacacgtcgttacagtggagcgggatggtgtga
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