Scomber scombrus (Atlantic mackerel): 133980079
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Entry
133980079 CDS
T10651
Symbol
rsf1a
Name
(RefSeq) LOW QUALITY PROTEIN: remodeling and spacing factor 1
KO
K11657
remodeling and spacing factor 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133980079 (rsf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133980079 (rsf1a)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Chromatin remodeling factors
RSF complex
133980079 (rsf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD
WHIM1
WSD
DDT
Motif
Other DBs
NCBI-GeneID:
133980079
NCBI-ProteinID:
XP_062274634
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All DBs
Position
5:complement(31584350..31613204)
Genome browser
AA seq
1475 aa
AA seq
DB search
MAAPAVVVVRSSGPALCPSFAVVCSFLERYGAALDLPEMTYPQMERYLRDKTAVPKPLVE
LHVKLLRKLGRSVSTDRWEKYLAKVCQELNNTWAWELEQKGYQEMSMECKSSILKYLCEC
QFDDNLKFKMAINEEDPEKMRLQPLGRDRQGLMYWLQLDQEQNIRLYTEEQDDLDGSTWN
CIVRTRNDLAEALELLKAQVEPNPNRDQNQAGSRSGSPTQRDAGAEVTGSTNPDEPSKTT
EQNTEGKKDEPEEEEKPLTQVVKQEPPLTIKQEDAEVKEEKPEHRPPAFDNRVSTITTIV
KSESRDADAPPKNAVSVVMAAGAAVAAAAAAVPKQELNKEEEAERAVVRSNQQAKIPLKK
RELKLAESYHSNHLNNSNNSSSIIVCNPSVIQTKDSQVREGLSLAPPGGPTSSQQQLAVT
ALRQELTNGRSALLLPHKEGQNGVIGVIGQVGVVGHVGVIRSPSERHRTTPGAEQQQEQQ
NGPSLAEQHGSRAAAAEEEREVSRQSVLVRKSPTEGETTAAVSVTISAEEPKRHTAEEMG
PNTTKELLEKEAKTGSSSPQRKEDEEEEEERRGASAVEEGSKDDNEKDKSTLGKVEAEPA
GAVPPLKEAQQEHQRGEGINGGLVAQVRVKDVGLQSEEKQGPLEEASSEIQKEGIRLKIK
IPPHRRNKNKLRGKGGSGGGKEEEKAREQVQEEEEGRSLRRSARICRSSALPTCRPSSKA
AEGQRKKQTKKQALPSRTRGEEEEEEEEEEEEEEEEEDEDGQKKNRKAEPVGQLRKRRGK
RRHRRPRWSNIRSKRRKLNEGGESEHRGRERGEEESEGGSDSEESCKSEEIRSEDACSQC
GLPNHPELILLCDSCDSGFHTACLRPPLMLIPDGEWFCPPCQHKLLCEKLEEHLLNLDSA
LKKRERAERRRERLVYVGISVENIIPEGDEEEEEKSPKKKDSKKSKNLGRRSTRTRKHIS
YRFDDFDDAIDEAIEEDIGDICAGAGPGKDIASMLTEDGKESQRPIRGPTRSARNRKKRR
LNDLESDSTAAESEDEFMLSNSSEDEDFAASGPDEEEEEDEEAGSDVGSLESGARPRRAM
KGVPKRPPGRTQRRGRKRLRRRRRRSSEEEEETEEEMDSDQYSDMSDSNPDKKRGGLRRG
QRQQVNYRETTDSSDNSQPSTKKLKVRPRGRPRKEHLSTDYSDVSGSSRESEDEDDYEDE
EEDGRRRRVNKRRREEEDYRRSRTRVKRRRYERGDDDNNEAEDRARGRRLQRKLLEREDR
EKRRSLKRTDREEEDPEKMGRGKRREILSEQRRKRLALMLKKRRPSTDEDDDDDDDSDDS
ESSSEEDRPIRKRLNRIDSDEEDDDDDEEEEEEDNDEEEGGQKMTTKKSSAAERSSRVAG
GDGGGGSSSSKDGSDAQDKGRGRSLSPSNGHRTSRGPAKPAAGSPTAPRDSAATGRQDRH
NGPSHPEEEEEEEEEEEEEQEQKDSLNSVQNSPQS
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccggcggtggtggtggtgaggagctccggcccggcgctgtgcccgagcttc
gcggtggtctgctcgttcctggagcgttacggagcagccctcgacctgcccgagatgact
tacccgcagatggagcgctatctccgggacaaaacggcagttcctaaacctcttgtggag
ctccatgtgaagctgctcaggaagctggggaggtctgtgtctacggaccgctgggagaaa
tacctggccaaggtttgccaggagctgaacaacacctgggcctgggagctggagcagaaa
ggctaccaggaaatgtccatggagtgcaagtcgagcatcctcaaatatctctgcgagtgt
cagttcgacgacaacctgaagttcaagatggcgattaacgaggaggacccggagaagatg
cgtctgcagccgctgggtcgggaccggcagggactgatgtactggctgcagctggaccag
gagcagaacatcaggctgtataccgaggagcaggacgacctggacggatccacatggaac
tgcatcgtcaggacccgtaacgacctggccgaggctctggagctgctgaaggctcaggtc
gagccgaaccccaaccgggaccagaaccaggctggatccaggagcggcagccccacacag
agagacgcaggggccgaggtgacaggaagcaccaaccctgatgaaccctcaaagaccacg
gagcagaacactgaaggcaagaaggacgagcctgaagaggaggagaaaccgctcacacaa
gtggtgaagcaggagccgccgctgaccatcaaacaggaagacgctgaggtgaaagaagag
aagccggagcaccgcccgcccgccttcgataaccgcgtcagcaccatcaccaccatcgtc
aagtcagagtccagagacgccgacgccccgccgaaaaacgctgtgtccgtcgtcatggca
gcgggagccgccgtggccgccgccgccgccgccgtcccgaaacaggagctgaacaaggaa
gaggaggcggagcgggcggtcgtcaggagcaaccagcaggccaagataccgctgaagaag
agggagctgaagctggccgagagttaccatagcaaccacctgaacaacagcaacaacagc
agcagcatcatcgtgtgcaacccgtcggtgatccagacgaaagacagccaggtgagagag
gggttgtcgttggcgccgcccggcggtccgacgtcgtcacagcagcagctcgccgtcacc
gcgctgaggcaggagctgaccaacgggaggtcggcgctcctcctgccgcacaaagagggt
cagaacggagtcataggggtcataggtcaagtgggcgtcgtgggtcacgtcggcgtcatc
cgaagcccgtcggagcgccacaggacgacgcccggcgccgagcagcagcaagagcagcag
aacgggccgagtttagcagagcagcacggatccagagctgctgctgcggaggaagagcgg
gaggtgagccggcagtcggtgctggtgaggaagagtccgacggaaggggagacgaccgcc
gccgtgtccgtcaccatctccgcagaggaacctaagagacacacagcagaggagatgggt
ccaaacacaaccaaggagctgttagagaaggaggcgaaaactgggtccagcagtcctcaa
cgaaaagaggatgaggaggaggaggaagagaggagaggggcgtctgcggtggaagaagga
agtaaagacgacaacgaaaaggataaaagcactttaggaaaggtggaggcagaaccggcg
ggtgctgtccctcctctaaaagaagcccaacaggagcaccagcgaggagaggggatcaac
ggcgggttggtagcccaggttcgggtgaaggacgttgggttgcagtcggaggagaagcag
ggtcctctggaggaagcgtcgtcggagatccagaaagaaggaatcaggttgaagataaag
atccctcctcatcgaaggaacaagaacaagctgagggggaaaggcggcagcggcggcggg
aaggaggaggagaaagcgagggagcaggtgcaggaggaggaggaggggaggtcgctgagg
agatctgcgaggatttgcagatcatctgctttgccaacctgcaggccgagctcgaaggcg
gctgagggccagaggaagaaacagacaaagaaacaggcgctgccctcccgaacgagggga
gaggaggaagaggaggaggaggaagaggaggaggaagaagaggaggaagaggatgaggac
gggcagaagaaaaacaggaaagcagaacctgttggacagctcaggaaacgaaggggtaaa
cggaggcatcgacgcccccgctggtccaacatccgctcgaagaggcgcaaactgaacgag
ggaggggagtctgagcacagagggagggaacgaggagaggaggagagcgaaggagggagc
gactcggaggaatcgtgtaaatcggaggagattcgcagcgaggacgcctgcagtcagtgc
ggtttgccgaaccatcccgaactgatcctgctctgtgactcctgtgacagcggcttccac
accgcctgcctgcggccgccgctcatgttgattcctgacggagaatggttctgtcctccc
tgccaacataagctgctgtgtgagaaacttgaggagcatctgctgaatctggacagtgct
ctgaagaagagagagagagcggagaggaggagggaacggctggtttacgttgggatcagc
gtggagaacatcattcctgagggagacgaggaggaagaggagaagtcgccgaagaagaaa
gactccaaaaagagtaaaaatctgggcaggagatccaccagaaccaggaagcacatcagc
tacaggttcgatgacttcgatgacgccattgatgaagcgatagaagaagacatcggagac
atctgtgctggagcggggccgggcaaagacatcgcctccatgctgacagaggacgggaag
gagagccagcggccaatcagaggcccgactcgctccgccaggaacaggaagaagcgacgg
ctgaacgacctggagagcgacagcacggcggcagagagcgaagacgagttcatgctcagc
aacagttcggaggacgaggatttcgcagcgtcgggaccagacgaggaagaggaggaggat
gaagaggcgggcagcgacgttggcagtttggagagcggggctcgcccccgacgggccatg
aagggagtcccgaaacggccccccggcagaacccaacgcaggggcaggaaacggctgagg
aggcgacggagacgctcgtctgaggaagaggaggagactgaggaagagatggactcggat
cagtacagcgacatgtctgacagtaacccagataagaagcgggggggtttgaggcgaggt
cagcgtcagcaggtaaactaccgcgagacgacggactcgtcggataattctcagccgtcc
accaagaaactgaaagtgagacctcgcggccgcccgcgcaaggagcatctgtccaccgac
tacagcgacgtgtcggggtcgtccagagaatccgaggatgaggacgactacgaagacgaa
gaggaggacggccggaggaggcgagtgaacaagagaaggagagaggaggaagactatcgc
aggagcaggacacgagtgaagaggaggcgatacgaaagaggagacgacgacaacaacgag
gcggaggacagagcgagagggaggcggcttcagaggaaactgctggagagggaggacaga
gagaagaggaggagcttaaagaggacagacagagaagaggaggatccggagaagatggga
agagggaagaggagagagatcctgtcggagcagcgccgcaaacgcctcgctctgatgctg
aagaagcggcggccttctacggacgaggacgacgacgatgacgacgattccgatgattcc
gagtcgtcgtcagaggaggatcgtccgatccgcaaaagactcaaccgcatcgactctgat
gaggaagacgacgacgacgacgaggaagaagaagaagaggacaatgatgaggaagaagga
gggcagaagatgacgaccaaaaagtcttcagcggcagagaggagttcacgcgttgccggg
ggcgacggcggcggcggcagcagcagcagcaaagacggcagcgacgctcaggacaagggg
aggggccggagcctttctccatctaacggacatcggacctccagaggcccggcgaagccc
gcggccggaagtcccaccgcacccagagacagtgcagcgacgggcaggcaggacaggcac
aacggcccctcacatccagaggaggaggaggaggaagaggaggaggaggaggaggagcag
gagcagaaagactcattaaactctgttcagaacagtccgcagtcatga
DBGET
integrated database retrieval system
