KEGG   Scomber scombrus (Atlantic mackerel): 133980123
Entry
133980123         CDS       T10651                                 
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
  KO
K16498  protocadherin delta 1
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco03273  Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03273 Virion - Lassa virus and SFTS virus
    133980123
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ssco01009]
    133980123
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:ssco04515]
    133980123
Protein phosphatases and associated proteins [BR:ssco01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     133980123
Cell adhesion molecules [BR:ssco04515]
 Cadherins
  Protocadherins
   133980123
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_CELSR2_9th
Other DBs
NCBI-GeneID: 133980123
NCBI-ProteinID: XP_062274694
LinkDB
Position
1:complement(25432099..25435507)
AA seq 936 aa
MNELFKSDSNKAQHSAEVCAAHRSKCLGYLSCHSSCYKWKVLDXDINMFNSKHLSLSKRG
GIWGLCIILLYTSPLSCFANFSQAKELIYKIKEGLPRGTFIGAIGVDLNLDFTVEPPFLF
SLPQKKVNGQYVNLNNTTGELYTSATEIDRETLCPDNTEGKGCVLALDVFVLPQQYFQLV
KVKIFIEDVNDNRPKFPVDEICISVPENTPVNARYAVEQSAVDPDLGLHGVQTYWLVNDF
GVFTLDVEENEGGELTPFLIVTEALDRETQAEYITDIIAEDGGTPPLLGAATLKIVITDV
NDNCPQFSESHINVTLHGNTTKGAHLAHLHAFDPDLGANAQISYAYSERVPRDTRSLFHL
DRITGLIKLAGKIDTGTATFYKLIVLANGPGCIPSVAIITVHIIKVVTGPPAIIPRYIAP
EKDGVVKIKESEPVFSPIAFFTIKNIDMNQRVDCHLEGTGPFRLGPYQLFKNEYLLETTE
PLDYEKTEEYELIVVAENMRGLVIKTFLKVQVLDENDNAPVFQQSLMELSIEENNPPNTF
LAQLQATDQDSESRGEVIYLLGGDTPGIFVVDRVTGVLTVATSLDREEKETYRFIVRAVD
QGTPRRESIATVVVTVQDRNDNSPRFINKDFTFFVPENFPGYGEIGVLSVTDADAGENGW
VALSILNGSDIFLIDTGRGTLRAKTSLDREQQGTYQLWIEAIDGGEPALSCVTMVNVLLL
DVNDNPPIVLFPQSNQSYMLVLPSTLPGTSITEVYAVDKDTGMNAVIAYSIIKRKGGEQG
SFVIDPDTGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFFVNETVSNESYIQS
LLTKEADIEVEERPWYIGQMTEGPERYELFSCQSALIALSVTCLGLFLSVVTLTSYICCK
RFKKHRKKQSVVEIPLKMKNDSIQGVNRKLRQISNI
NT seq 2811 nt   +upstreamnt  +downstreamnt
atgaatgagttgttcaagtcagacagcaataaggcacagcactcagcagaggtctgcgct
gctcatcgctcaaaatgcctgggttacttaagctgccactcttcctgctataaatggaaa
gtgctggattaggacataaacatgttcaacagcaaacacctcagccttagcaaaagagga
ggaatatggggattgtgcatcatcttgctttacaccagccctctttcctgttttgcaaat
ttcagccaagctaaagagctcatctataagataaaggagggattacccagggggaccttc
ataggggccattggagtagacttaaatttggatttcacagttgagcccccctttttattc
agtctgcctcaaaagaaggtcaatggacagtatgtgaacctaaataataccaccggggag
ctttacacttctgctacagagattgacagggagacgctctgtcctgataacacagaggga
aaaggatgtgtcctcgcactggatgtgtttgtgttgcctcagcagtattttcagctggtg
aaagttaagatcttcattgaggatgtgaacgacaacaggccaaagttccctgtggatgag
atctgtatatctgtcccagaaaacacacccgtcaatgcccgttatgcagtggagcagtct
gcagttgacccagacctgggtcttcatggggtgcagacctactggcttgttaatgacttt
ggcgtgttcacactggatgttgaggagaatgaggggggtgagctgacacccttcctcatt
gtgacagaagctttggacagagagacacaggctgaatacattacagatatcatagcagag
gatggagggacccctcctctacttggcgcagctactttaaaaattgtcatcacggatgtg
aacgataactgcccccaattcagtgagtcgcacattaatgtcactctgcatgggaatacc
accaaaggggcacatttggcacatctacatgcttttgaccctgaccttggtgctaatgct
cagatcagctatgcttacagtgaacgtgtgccaagggataccaggagcttgttccatttg
gacagaatcacagggttgatcaagctagcagggaaaatagacactggcacagccacattt
tacaaactcattgttctggccaatggacctggttgtataccttctgttgccatcattact
gttcatatcatcaaagttgtgacaggaccacctgctatcataccccggtatattgcacca
gaaaaggatggagtggtaaaaataaaggagtcggagccagtgttttctccaatcgctttt
tttaccatcaaaaacattgatatgaaccaaagggtggactgtcatttggagggtactggt
cctttcaggcttggtccctatcagctattcaaaaatgaatacctgctagagactactgag
cccctggactatgagaagacagaggaatatgaactgatcgtggttgctgagaatatgcgg
gggcttgtcatcaagactttcctcaaggtgcaggtattggatgaaaacgacaatgctcca
gtgtttcagcagtctttgatggaactatctatagaggagaacaatccaccaaataccttt
ctagcccagctgcaagccacagaccaggacagtgaaagccgtggggaagtcatctatctc
cttggaggtgacacccctgggatctttgttgtagatcgtgtgacaggtgtcctgactgtg
gcaacatctctggaccgcgaagagaaagagacataccggttcatagtaagagcggtggac
caggggacacccaggagggagtctattgcaactgtggtggtgactgtgcaagaccgcaat
gacaacagtccgcgcttcatcaacaaggatttcactttctttgtgccagagaactttcca
gggtacggtgagatcggagtcctctctgtgacagatgctgacgctggggaaaatggctgg
gttgctctttctatcctcaatggcagtgacatctttttgatagacacaggcagagggaca
ctcagggccaaaacatcactagaccgtgagcaacaagggacataccagctgtggattgag
gccattgatggtggagagcctgcgctttcctgtgtcacaatggtgaacgtgctactgctg
gatgttaatgacaacccacctattgttctattcccccagtccaatcagtcttacatgcta
gtgctcccctctacattaccagggacgtcgatcacagaggtgtacgctgtggataaggat
acaggcatgaatgctgtgattgcatatagcatcataaagaggaaaggtggtgagcaaggg
tcatttgtcatcgacccagacacaggaaatatcacattaaagagggagctcagcaaccgc
ggactctacagccttctggtgaaggtcagtgatcatggtcagccagagccgctttactca
acagtcatggttaacttctttgtcaatgaaacagtgagcaatgagagttacatccagagt
ctgctgaccaaagaggctgacattgaggtagaggagaggccctggtacattggtcagatg
acagaagggcctgagaggtatgagctgttctcctgtcagtctgccctcattgctctttca
gtgacatgtctaggactattcctctcagttgtcacactgacatcttacatatgctgtaag
aggtttaaaaaacacaggaagaaacaatcagtagtggaaatacctttaaaaatgaagaat
gactcaatacagggtgtgaacaggaagctcaggcagatctcaaacatctga

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