Entry |
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Name |
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
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KO |
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Organism |
ssco Scomber scombrus (Atlantic mackerel)
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Pathway |
ssco03273 | Virion - Lassa virus and SFTS virus |
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Brite |
KEGG Orthology (KO) [BR:ssco00001]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133980123
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:ssco01009]
133980123
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:ssco04515]
133980123
Protein phosphatases and associated proteins [BR:ssco01009]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133980123
Cell adhesion molecules [BR:ssco04515]
Cadherins
Protocadherins
133980123
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
1:complement(25432099..25435507)
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AA seq |
936 aa
MNELFKSDSNKAQHSAEVCAAHRSKCLGYLSCHSSCYKWKVLDXDINMFNSKHLSLSKRG
GIWGLCIILLYTSPLSCFANFSQAKELIYKIKEGLPRGTFIGAIGVDLNLDFTVEPPFLF
SLPQKKVNGQYVNLNNTTGELYTSATEIDRETLCPDNTEGKGCVLALDVFVLPQQYFQLV
KVKIFIEDVNDNRPKFPVDEICISVPENTPVNARYAVEQSAVDPDLGLHGVQTYWLVNDF
GVFTLDVEENEGGELTPFLIVTEALDRETQAEYITDIIAEDGGTPPLLGAATLKIVITDV
NDNCPQFSESHINVTLHGNTTKGAHLAHLHAFDPDLGANAQISYAYSERVPRDTRSLFHL
DRITGLIKLAGKIDTGTATFYKLIVLANGPGCIPSVAIITVHIIKVVTGPPAIIPRYIAP
EKDGVVKIKESEPVFSPIAFFTIKNIDMNQRVDCHLEGTGPFRLGPYQLFKNEYLLETTE
PLDYEKTEEYELIVVAENMRGLVIKTFLKVQVLDENDNAPVFQQSLMELSIEENNPPNTF
LAQLQATDQDSESRGEVIYLLGGDTPGIFVVDRVTGVLTVATSLDREEKETYRFIVRAVD
QGTPRRESIATVVVTVQDRNDNSPRFINKDFTFFVPENFPGYGEIGVLSVTDADAGENGW
VALSILNGSDIFLIDTGRGTLRAKTSLDREQQGTYQLWIEAIDGGEPALSCVTMVNVLLL
DVNDNPPIVLFPQSNQSYMLVLPSTLPGTSITEVYAVDKDTGMNAVIAYSIIKRKGGEQG
SFVIDPDTGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFFVNETVSNESYIQS
LLTKEADIEVEERPWYIGQMTEGPERYELFSCQSALIALSVTCLGLFLSVVTLTSYICCK
RFKKHRKKQSVVEIPLKMKNDSIQGVNRKLRQISNI |
NT seq |
2811 nt +upstreamnt +downstreamnt
atgaatgagttgttcaagtcagacagcaataaggcacagcactcagcagaggtctgcgct
gctcatcgctcaaaatgcctgggttacttaagctgccactcttcctgctataaatggaaa
gtgctggattaggacataaacatgttcaacagcaaacacctcagccttagcaaaagagga
ggaatatggggattgtgcatcatcttgctttacaccagccctctttcctgttttgcaaat
ttcagccaagctaaagagctcatctataagataaaggagggattacccagggggaccttc
ataggggccattggagtagacttaaatttggatttcacagttgagcccccctttttattc
agtctgcctcaaaagaaggtcaatggacagtatgtgaacctaaataataccaccggggag
ctttacacttctgctacagagattgacagggagacgctctgtcctgataacacagaggga
aaaggatgtgtcctcgcactggatgtgtttgtgttgcctcagcagtattttcagctggtg
aaagttaagatcttcattgaggatgtgaacgacaacaggccaaagttccctgtggatgag
atctgtatatctgtcccagaaaacacacccgtcaatgcccgttatgcagtggagcagtct
gcagttgacccagacctgggtcttcatggggtgcagacctactggcttgttaatgacttt
ggcgtgttcacactggatgttgaggagaatgaggggggtgagctgacacccttcctcatt
gtgacagaagctttggacagagagacacaggctgaatacattacagatatcatagcagag
gatggagggacccctcctctacttggcgcagctactttaaaaattgtcatcacggatgtg
aacgataactgcccccaattcagtgagtcgcacattaatgtcactctgcatgggaatacc
accaaaggggcacatttggcacatctacatgcttttgaccctgaccttggtgctaatgct
cagatcagctatgcttacagtgaacgtgtgccaagggataccaggagcttgttccatttg
gacagaatcacagggttgatcaagctagcagggaaaatagacactggcacagccacattt
tacaaactcattgttctggccaatggacctggttgtataccttctgttgccatcattact
gttcatatcatcaaagttgtgacaggaccacctgctatcataccccggtatattgcacca
gaaaaggatggagtggtaaaaataaaggagtcggagccagtgttttctccaatcgctttt
tttaccatcaaaaacattgatatgaaccaaagggtggactgtcatttggagggtactggt
cctttcaggcttggtccctatcagctattcaaaaatgaatacctgctagagactactgag
cccctggactatgagaagacagaggaatatgaactgatcgtggttgctgagaatatgcgg
gggcttgtcatcaagactttcctcaaggtgcaggtattggatgaaaacgacaatgctcca
gtgtttcagcagtctttgatggaactatctatagaggagaacaatccaccaaataccttt
ctagcccagctgcaagccacagaccaggacagtgaaagccgtggggaagtcatctatctc
cttggaggtgacacccctgggatctttgttgtagatcgtgtgacaggtgtcctgactgtg
gcaacatctctggaccgcgaagagaaagagacataccggttcatagtaagagcggtggac
caggggacacccaggagggagtctattgcaactgtggtggtgactgtgcaagaccgcaat
gacaacagtccgcgcttcatcaacaaggatttcactttctttgtgccagagaactttcca
gggtacggtgagatcggagtcctctctgtgacagatgctgacgctggggaaaatggctgg
gttgctctttctatcctcaatggcagtgacatctttttgatagacacaggcagagggaca
ctcagggccaaaacatcactagaccgtgagcaacaagggacataccagctgtggattgag
gccattgatggtggagagcctgcgctttcctgtgtcacaatggtgaacgtgctactgctg
gatgttaatgacaacccacctattgttctattcccccagtccaatcagtcttacatgcta
gtgctcccctctacattaccagggacgtcgatcacagaggtgtacgctgtggataaggat
acaggcatgaatgctgtgattgcatatagcatcataaagaggaaaggtggtgagcaaggg
tcatttgtcatcgacccagacacaggaaatatcacattaaagagggagctcagcaaccgc
ggactctacagccttctggtgaaggtcagtgatcatggtcagccagagccgctttactca
acagtcatggttaacttctttgtcaatgaaacagtgagcaatgagagttacatccagagt
ctgctgaccaaagaggctgacattgaggtagaggagaggccctggtacattggtcagatg
acagaagggcctgagaggtatgagctgttctcctgtcagtctgccctcattgctctttca
gtgacatgtctaggactattcctctcagttgtcacactgacatcttacatatgctgtaag
aggtttaaaaaacacaggaagaaacaatcagtagtggaaatacctttaaaaatgaagaat
gactcaatacagggtgtgaacaggaagctcaggcagatctcaaacatctga |