Scomber scombrus (Atlantic mackerel): 133980123
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Entry
133980123 CDS
T10651
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
KO
K16498
protocadherin delta 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03273
Virion - Lassa virus and SFTS virus
ssco04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133980123
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
133980123
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssco01009
]
133980123
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133980123
Protein phosphatases and associated proteins [BR:
ssco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133980123
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Protocadherins
133980123
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_2
Ig_Cad99C_N
Cadherin_CELSR2_9th
Epiregulin_C
Motif
Other DBs
NCBI-GeneID:
133980123
NCBI-ProteinID:
XP_062274694
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All DBs
Position
1:complement(25432099..25435507)
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AA seq
936 aa
AA seq
DB search
MNELFKSDSNKAQHSAEVCAAHRSKCLGYLSCHSSCYKWKVLDXDINMFNSKHLSLSKRG
GIWGLCIILLYTSPLSCFANFSQAKELIYKIKEGLPRGTFIGAIGVDLNLDFTVEPPFLF
SLPQKKVNGQYVNLNNTTGELYTSATEIDRETLCPDNTEGKGCVLALDVFVLPQQYFQLV
KVKIFIEDVNDNRPKFPVDEICISVPENTPVNARYAVEQSAVDPDLGLHGVQTYWLVNDF
GVFTLDVEENEGGELTPFLIVTEALDRETQAEYITDIIAEDGGTPPLLGAATLKIVITDV
NDNCPQFSESHINVTLHGNTTKGAHLAHLHAFDPDLGANAQISYAYSERVPRDTRSLFHL
DRITGLIKLAGKIDTGTATFYKLIVLANGPGCIPSVAIITVHIIKVVTGPPAIIPRYIAP
EKDGVVKIKESEPVFSPIAFFTIKNIDMNQRVDCHLEGTGPFRLGPYQLFKNEYLLETTE
PLDYEKTEEYELIVVAENMRGLVIKTFLKVQVLDENDNAPVFQQSLMELSIEENNPPNTF
LAQLQATDQDSESRGEVIYLLGGDTPGIFVVDRVTGVLTVATSLDREEKETYRFIVRAVD
QGTPRRESIATVVVTVQDRNDNSPRFINKDFTFFVPENFPGYGEIGVLSVTDADAGENGW
VALSILNGSDIFLIDTGRGTLRAKTSLDREQQGTYQLWIEAIDGGEPALSCVTMVNVLLL
DVNDNPPIVLFPQSNQSYMLVLPSTLPGTSITEVYAVDKDTGMNAVIAYSIIKRKGGEQG
SFVIDPDTGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFFVNETVSNESYIQS
LLTKEADIEVEERPWYIGQMTEGPERYELFSCQSALIALSVTCLGLFLSVVTLTSYICCK
RFKKHRKKQSVVEIPLKMKNDSIQGVNRKLRQISNI
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagttgttcaagtcagacagcaataaggcacagcactcagcagaggtctgcgct
gctcatcgctcaaaatgcctgggttacttaagctgccactcttcctgctataaatggaaa
gtgctggattaggacataaacatgttcaacagcaaacacctcagccttagcaaaagagga
ggaatatggggattgtgcatcatcttgctttacaccagccctctttcctgttttgcaaat
ttcagccaagctaaagagctcatctataagataaaggagggattacccagggggaccttc
ataggggccattggagtagacttaaatttggatttcacagttgagcccccctttttattc
agtctgcctcaaaagaaggtcaatggacagtatgtgaacctaaataataccaccggggag
ctttacacttctgctacagagattgacagggagacgctctgtcctgataacacagaggga
aaaggatgtgtcctcgcactggatgtgtttgtgttgcctcagcagtattttcagctggtg
aaagttaagatcttcattgaggatgtgaacgacaacaggccaaagttccctgtggatgag
atctgtatatctgtcccagaaaacacacccgtcaatgcccgttatgcagtggagcagtct
gcagttgacccagacctgggtcttcatggggtgcagacctactggcttgttaatgacttt
ggcgtgttcacactggatgttgaggagaatgaggggggtgagctgacacccttcctcatt
gtgacagaagctttggacagagagacacaggctgaatacattacagatatcatagcagag
gatggagggacccctcctctacttggcgcagctactttaaaaattgtcatcacggatgtg
aacgataactgcccccaattcagtgagtcgcacattaatgtcactctgcatgggaatacc
accaaaggggcacatttggcacatctacatgcttttgaccctgaccttggtgctaatgct
cagatcagctatgcttacagtgaacgtgtgccaagggataccaggagcttgttccatttg
gacagaatcacagggttgatcaagctagcagggaaaatagacactggcacagccacattt
tacaaactcattgttctggccaatggacctggttgtataccttctgttgccatcattact
gttcatatcatcaaagttgtgacaggaccacctgctatcataccccggtatattgcacca
gaaaaggatggagtggtaaaaataaaggagtcggagccagtgttttctccaatcgctttt
tttaccatcaaaaacattgatatgaaccaaagggtggactgtcatttggagggtactggt
cctttcaggcttggtccctatcagctattcaaaaatgaatacctgctagagactactgag
cccctggactatgagaagacagaggaatatgaactgatcgtggttgctgagaatatgcgg
gggcttgtcatcaagactttcctcaaggtgcaggtattggatgaaaacgacaatgctcca
gtgtttcagcagtctttgatggaactatctatagaggagaacaatccaccaaataccttt
ctagcccagctgcaagccacagaccaggacagtgaaagccgtggggaagtcatctatctc
cttggaggtgacacccctgggatctttgttgtagatcgtgtgacaggtgtcctgactgtg
gcaacatctctggaccgcgaagagaaagagacataccggttcatagtaagagcggtggac
caggggacacccaggagggagtctattgcaactgtggtggtgactgtgcaagaccgcaat
gacaacagtccgcgcttcatcaacaaggatttcactttctttgtgccagagaactttcca
gggtacggtgagatcggagtcctctctgtgacagatgctgacgctggggaaaatggctgg
gttgctctttctatcctcaatggcagtgacatctttttgatagacacaggcagagggaca
ctcagggccaaaacatcactagaccgtgagcaacaagggacataccagctgtggattgag
gccattgatggtggagagcctgcgctttcctgtgtcacaatggtgaacgtgctactgctg
gatgttaatgacaacccacctattgttctattcccccagtccaatcagtcttacatgcta
gtgctcccctctacattaccagggacgtcgatcacagaggtgtacgctgtggataaggat
acaggcatgaatgctgtgattgcatatagcatcataaagaggaaaggtggtgagcaaggg
tcatttgtcatcgacccagacacaggaaatatcacattaaagagggagctcagcaaccgc
ggactctacagccttctggtgaaggtcagtgatcatggtcagccagagccgctttactca
acagtcatggttaacttctttgtcaatgaaacagtgagcaatgagagttacatccagagt
ctgctgaccaaagaggctgacattgaggtagaggagaggccctggtacattggtcagatg
acagaagggcctgagaggtatgagctgttctcctgtcagtctgccctcattgctctttca
gtgacatgtctaggactattcctctcagttgtcacactgacatcttacatatgctgtaag
aggtttaaaaaacacaggaagaaacaatcagtagtggaaatacctttaaaaatgaagaat
gactcaatacagggtgtgaacaggaagctcaggcagatctcaaacatctga
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