Scomber scombrus (Atlantic mackerel): 133980128
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Entry
133980128 CDS
T10651
Symbol
cadm1b
Name
(RefSeq) cell adhesion molecule 1b isoform X1
KO
K06781
cell adhesion molecule 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04514
Cell adhesion molecule (CAM) interaction
ssco04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
133980128 (cadm1b)
04517 IgSF CAM signaling
133980128 (cadm1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133980128 (cadm1b)
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
Nectin family
133980128 (cadm1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
V-set
Ig_VEGFR-1-like_5th
C1-set
SMAGP
KOW2_Spt5
Adhes-Ig_like
Syndecan
Motif
Other DBs
NCBI-GeneID:
133980128
NCBI-ProteinID:
XP_062274696
LinkDB
All DBs
Position
5:complement(17251964..17396386)
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AA seq
423 aa
AA seq
DB search
MLLEMKCILEDGCKNSFTLSGRLKLQGHGAAETVTVEGQNLATDNVSVIEGEMATISCRV
KNNDDSVIQLLNPNRQTIYFKDVRPLKDSRFQLVNFSDNELRVSLSNVSLSDEGRYVCQL
YTDPPQEAYADITVLVPPGSPIIESHEDMVREGNETELTCTAMGSKPAASIRWMKGEEEL
TGETTVEETYDRMFTVTSRVRFSVTKEDDGVPVDCIIDHPAAKDLLAQRHLEVLYKPEVK
IVVAYPEGLPREGDNLDLTCIAEGKPHPHQINWLRVDEDVPPHAVVTGSDLYIENLNKSY
NGTYRCVASNAVGEAYDDYILYVYDAPTTLPTPTTNPVNTQDSRAGEGAPQKIDHAVIGG
VVAVVMFAILCALIVLGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGHNNTDEKKE
YYI
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgttgttggaaatgaagtgtatccttgaggatgggtgtaaaaacagcttcactttatct
ggaagattaaaacttcagggtcacggagctgctgaaaccgtgacagttgaaggtcagaac
ctggcgactgacaatgtgtcagtgattgagggggaaatggccaccatcagctgcagagtg
aagaacaacgatgactctgtcattcagctgctcaaccccaaccgacagaccatctacttc
aaagatgttagacctctgaaggacagccggttccagctggtgaatttctctgacaacgaa
ctgcgggtgtctctgtccaatgtgtcactctccgatgagggacgctatgtgtgccagctc
tacacggatcctcctcaggaagcctacgcagacatcactgtcctggtcccaccaggaagc
ccaatcatcgagagccatgaggatatggtcagagaggggaacgagacggagctcacctgc
acagccatgggcagcaagccagctgcctccatcagatggatgaaaggggaggaagaactg
acaggtgagacaacagttgaggagacgtatgacaggatgtttactgtcaccagccgagta
agattttctgtcaccaaagaggatgatggagtaccagtggactgcatcattgaccaccca
gctgcaaaggacctcctagctcaaagacatttagaagtgctgtataaaccagaagtgaag
atcgtggtggcatatcctgaaggattaccaagagagggtgacaatctagatttgacatgt
atcgcagaaggaaaaccacatccccatcagatcaactggctgagagtagacgaggatgtg
ccgcctcacgctgtggtcaccggctctgatctctacatcgagaacctcaacaagtcttac
aacggcacctatcgctgtgtggcttccaatgctgtgggagaagcctacgatgactacatc
ctctatgtatatgatgctcccactactctccccacacccaccaccaatccagtcaacacg
caagactccagagccggcgagggggcaccacagaaaattgaccatgctgtcattggagga
gtggttgccgtggtgatgtttgccatcctctgtgcactcattgtgcttggtcgatacttt
gccagacacaaaggcacttacttcacacatgaagccaaaggggcagacgacgcagctgat
gcagacacggccatcatcaacgcggagggaggacacaacaatacagacgagaagaaggag
tactatatctaa
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