Scomber scombrus (Atlantic mackerel): 133980225
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Entry
133980225 CDS
T10651
Symbol
dscaml1
Name
(RefSeq) cell adhesion molecule DSCAML1 isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
DSCAM family
133980225 (dscaml1)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133980225
NCBI-ProteinID:
XP_062274866
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Position
5:14164561..14263732
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AA seq
2099 aa
AA seq
DB search
MWLVTLLLLYSLQEVNSEDVVSPRLYFVNASLQRVTFSSSVGVSLPCPAGGAPHAVLRWY
LAAGDDIYDVPHIRHVHANGTLQLYPFSPSAYNSIIHDNEYFCTAENQAGKIRSPSIHIK
AVFREPYTVRVADQRSMRGNVAVFKCLIPSAVQEYVSVVSWEKDTVSIVPGNRFFLTSFG
ALYISEVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESTPSVLDSFQSGEVQVG
HSVELPCIASGYPNPTIRWLKDGRPLPADSRWTRRITGLTISDLRLEDSGNYICEVTNSF
GSKEVTGHLNVIEPLRVTLSPKNLKTGISSTVILSCAVQGSPHFIVSWYRNTESVLSDQH
FSIQGAHNETLFISAAQKRHSGAYQCFATRKGQTAQDFSIILLEDGTPRIVASFSEKVVV
PGEPFSLMCAAKGAPPPTITWTLDDEPVARDLSRVRASQYTLSDGSTVSHVNVSSPQIRD
GGVYRCAARNSAGSAEYQARINVRGPPRIRPMKNITAVAGRNTFINCRVIGYPYYSINWY
KEGLLLPDNHRQVVYENGTLKLSDVQKGMDEGAYVCSVLIQPQLFITQTVYVTVKVPPLI
QPFDFPPTSIGKLMYIACVVSSGDMPIRITWRKDGQEIVPSSGITIDTKEFMSSLQISKV
SLKHNGNYTCIASNDAATVSTERQLTVTVPPRFVVQPNNQDGIYGKAGILNCSVDGYPPP
KVMWKHAKGTLAGIGNPQQYHTVPLTGRIQIMSNGSLLIRHVLEEDRGFYLCQASNGVGS
DISKSMVLTVKIPAMITSHPNTTMAKKGHVKELNCTARGEWPIIIRWERGDTVIDPDRNP
RYSITTSPNEKTDEVLSTLKLKPAEREDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPEL
EVREVKDRSMNLRWTQRFDGNSVITSYDIEYKNKTDSWELKHATRNISPTNNQANIVDLH
PASVYSIRMYSYNAIGKSESSKELTISTEEAQPDGPPMEVILQPVTSQSIRVTWKAPRKE
LQNGVIRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG
TGPSSSEINATTLEDVPSQPPQNVRAISVTSDEAVITWAEPPRMTLHGVLKGYRVVFWAV
FPDGEWGEMQNITTTKEQVELRGLEKFTNYSIQVLAYTQAGDGVRSNVLYIQTREDYPGP
PAGIKAVPSSASSVVVSWLPPHKPNGIIRKYTIYCSSPGSGQPMPSEYEANPELLFYRIT
HLNHRQQYLIWAAAVTTAGRGNYSDKVTVEPAAKAPAKILSFGGTVTTPWMKEVRLPCSS
VGEPTPTIKWTKDSEDTAIPVSLDGQRLILANGTLVLRSVKAEDSGYYTCTATNTLGFDT
IIVNLLVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIRGFVLQYSVDNTEEWKDVFI
SSSERSFKLDNLRCGTWYKVKLAAKNSVGAGRISEIIEAKTHGREPQFNKDQPVFTHINS
SHARLNLQGWASGGCPISAVTLEFRPKGTWTWQSVRTNATTDVFLAELREATWYELKMKA
CNSAGCGNQSSQFATLDYDGSTIPPIKSPLEKNDDVKKLFSIGCPVILVTLGVALLFIIR
KKRKEKRLKRLRDAKSLAEMLISKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIEDKEGIK
QIGEDKATIPVTDTEFNQTGNPQSFCTGVSVHHPALIQNTGPLIDMSDIRPGTNPVSRKS
VKSAHSIRNRYSSQWTLTKCQASTPARTLTSDWRTVGSQHGITVTESDSYSASLSQDTDK
GRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFEITECFISDSSSDQMTTGTNDNAD
SMTSMSTPSEPGICRFTASPPKPQDYDRGKNVAVPIPHRAKSDYCNLPLYMKSDPFFRKQ
SEHHDPCPVVPPREASIRGLAQRAYHTQGRHVTMDSAKQQALTMGHSGLSNLTSSGASSG
GATGGCGGGSGSGVASASSSSSTLPLRTLTMPGSSASVAQSAAAAAAATAAAASGALSSS
GGCGAVGATGGTPGGASSSSSKMGGSRDSLLESSSSGLGRLQKQRDGGAGAYSKSYTLV
NT seq
6300 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttgtaactttacttctgctgtattctttgcaagaagtcaacagtgaggatgtt
gtctctccgcggctgtactttgtgaacgcctccctgcagcgggtgaccttctccagctcg
gtgggggtgtccctgccctgccctgcgggcggcgccccccatgccgtcctgcgctggtac
ctggctgccggagacgacatttacgacgtgccccatatccgccacgtgcatgccaacggc
accctccagctctacccattctctccctccgcctataatagcattatccatgacaacgag
tacttctgcactgctgagaaccaggcaggaaagattcgaagccccagcatccacatcaaa
gcagtgttcagggagccctacacagttcgtgtggccgaccagcgctccatgcggggtaat
gtcgccgttttcaagtgcctcatcccctcagccgtccaggagtacgtcagtgtcgtgtcc
tgggagaaagacaccgtctccatcgtcccaggtaaccgtttcttcctgacctcatttggc
gctctgtatatctcagaagtgcagaaggaagatgctctgtccacctaccgctgcattaca
aagcacaagtacagtggagagacgcgccagagcaatggagccaggctctctgttatggac
cctacggagtccaccccgtcagtgctggacagcttccagtccggtgaggtgcaggttggg
cacagtgtggagctaccctgcatcgcatctggatatccaaaccccaccatccgttggcta
aaggatgggcggccattaccggcagactctcgctggacacggcgcatcacaggcctcaca
atttctgacctgaggctcgaggacagcggcaactatatctgtgaggtcaccaatagcttt
ggctccaaagaggtgacaggtcacctcaatgtcatagagccattgcgggtcacgttgtcc
cccaagaacctgaagacggggatcagcagtacagtcatcctgtcttgtgccgtccagggt
tccccccattttattgtgtcttggtaccgtaacacagaatctgtcctgtctgaccagcac
ttctccatccagggggctcacaatgagacattgtttatttctgctgcacaaaagagacac
tctggagcttaccagtgctttgccacacgcaaaggccagactgcccaggacttctccatc
atattgctggaagatggtacaccccgtatcgttgcctccttcagtgagaaagtcgtggtt
ccaggtgaaccattttccctgatgtgcgccgccaaaggagcgcctcctccgaccatcacc
tggaccctggacgatgagccggtggcccgggacctgtcacgtgtccgagccagccagtac
acactctccgatggcagcacagtgagccacgtcaacgtcagcagtccacagattcgcgac
ggaggagtgtatcggtgcgccgcacgaaactcggccggtagtgccgagtaccaagcgcgc
ataaacgtaagaggtccaccaaggattcggccgatgaagaacatcactgcagtggcagga
agaaacacgttcataaactgtcgtgttattgggtacccttattattcaatcaactggtac
aaggaagggctcctgttgcctgacaaccatcgccaggtggtgtatgagaacgggactctg
aagctcagtgatgttcagaaggggatggacgaaggggcctatgtctgcagcgtactcatc
caaccgcagctgttcatcacacagacagtttatgtcactgtcaaagttcctccactgatc
cagccatttgactttccaccgacttccatcggtaaattgatgtacattgcttgtgtggtg
tcatctggagacatgcccattcgcatcacgtggcgcaaggatggccaggagattgtgcct
tcctcgggtatcaccatcgacacaaaggagttcatgagctccctccagatatccaaggtg
tcactcaaacacaacggcaactacacctgtatcgccagcaatgatgctgccactgtaagc
actgagaggcagctcactgtaacagtgcctcctcggtttgtggtgcagcccaacaaccag
gatgggatctatgggaaggcagggatcctcaattgttcagtagatggataccctcctccc
aaagtcatgtggaagcatgccaaaggtacactagcgggtattgggaacccacagcagtac
cacactgtgcctctgacgggccgtatacagatcatgagtaacggctctctactcatcaga
catgtcctggaagaggatcggggcttctacctctgtcaggcctccaatggggtgggctca
gacatcagcaagagcatggttctcactgttaagatcccggcaatgatcaccagtcaccca
aacactaccatggctaagaagggtcacgtgaaggagctgaactgcacagccaggggagaa
tggcccatcatcatccgctgggagagaggcgacactgtcattgaccctgaccgcaaccct
cggtactcaattaccaccagtcccaatgagaagaccgacgaggttttgtcgacactcaag
ctaaagccagcagagcgtgaggattcagtcttcttctcctgtcatgctatcaactcttac
ggagaaggacgaggccttatacagctcactgtgcaggagcccccagaccctccagagcta
gaggtgcgagaagtgaaagatcgtagtatgaacctccggtggacacagaggtttgatgga
aatagtgtcattacctcctacgatatagagtataagaacaagacagattcatgggagctg
aagcatgccactcgtaatatttcccccaccaacaatcaggcgaacatagtggaccttcac
cctgcctcagtctacagcatccgcatgtactcctacaatgctataggcaagagcgagtcc
agtaaagaactcaccattagcacagaggaagctcagcctgatggtcctcccatggaagtg
atcctgcagccagtaacctctcagagtatcagagtcacctggaaggctcccaggaaggag
ttgcaaaatggggtgatccggggttatcagatcggttacagagagaatggtccgggtagt
aatggccagtacagcattgtggagatgaaggccacaggagacagtgaggtgtacacactg
gacaacctgaagaagtttgctcagtatggtgtggttgtccaggccttcaacagagccggc
accgggccatctagctcagagatcaacgctacaacactagaagatgtgcccagccagccc
cctcagaatgtgcgagccatttctgtaacatctgacgaggccgtaatcacatgggctgaa
cctcccaggatgacactgcatggtgtcttgaagggataccgtgtcgtgttttgggctgtc
ttcccagatggagagtggggtgaaatgcaaaatatcaccactaccaaggagcaagtggag
ctcagaggcctggagaagttcaccaactacagcatccaggtgctggcctacacccaggct
ggtgatggagtccggagcaatgtcctttatatccagacccgcgaagactaccctggaccc
ccagctggcatcaaagctgtgccctcctccgccagtagtgtcgtggtgtcctggttaccc
ccccacaagccaaatggaatcatccgcaaatacaccatctactgctccagccccgggtca
ggccaaccgatgccaagcgagtatgaagccaatccagagctactattctacagaatcacc
catcttaaccaccggcagcaatacctgatctgggctgcagctgtcaccactgcaggccgg
ggtaactacagcgacaaagtcactgtcgagccagcagccaaggccccagctaagatccta
tcatttgggggtacagtgactactccctggatgaaggaggtgcgactgccctgtagctca
gtaggagaaccaacacctaccataaaatggaccaaagatagtgaggacacagccatccca
gtttctcttgacggacagcgtctcattcttgcaaatggcacactggtgctgcgctctgtc
aaagctgaagattctggttactacacctgcacggccaccaacacgctaggctttgacact
atcatagtcaaccttttggtacaagtccctccagaccagcctcgtcttactgtctccacc
acctccacctcctccatcacactagcctggataccaggagacaacggaggcagctctatc
agaggttttgtgctgcagtactctgtcgacaacacagaggagtggaaagatgtgttcatc
agttctagtgaacgctcctttaaactggataatctgcgctgtggcacctggtataaagtc
aagctggctgccaaaaacagtgttggagccggacgcatcagtgagatcattgaggcaaag
acacacgggcgagagccccagttcaacaaggatcagccagtcttcacccacatcaactcc
agtcacgcccgcctcaacctgcagggttgggccagtggaggttgtccaatcagcgctgtc
acactagagtttagaccaaagggtacatggacgtggcagagtgtgcgtaccaatgccacc
acagatgttttcctggcagagctgcgtgaggccacctggtatgaactgaagatgaaagcc
tgtaacagtgctggctgtggtaaccagagctcccagtttgcaacacttgattatgatggc
agcacaatccctccaatcaaatctcccctggaaaagaatgacgatgtcaagaagctgttt
tcgattggctgtcctgtgatcttggtcactcttggtgttgcactcctcttcatcattcgc
aagaaacgcaaagaaaagaggctaaaaagactaagagatgccaaaagcctggcagagatg
ttgatcagtaaaaacaaccgcagctttgacaccccagtgaagggacctcctcagggccca
cggttacacatcgacatccccagagtgcagttgctaattgaagacaaagagggcatcaag
caaatcggtgaggacaaagccaccatccctgtgacagacacagagttcaatcaaactggg
aatcctcagagcttctgcacaggtgtatctgtccatcaccccgctctcatccagaacacc
ggtcctttgattgacatgtcagacatcaggccaggaaccaacccagtgtcaaggaagagt
gttaaatcggcccacagcatcaggaaccgctactccagtcagtggactctgaccaagtgt
caagcctccacgccagctcgcactctcacctcagactggcgcacagttggctcccagcat
ggcatcactgtcacagagagtgacagctacagcgccagcctctcacaggacacagataag
ggtcgcaacagtatggtgtcgacagagagcgcctcatccacctacgaggagttggcaaga
gcatatgagcatgccaagctggaggaacacctgcagcatgccaagtttgagattacagag
tgctttatctctgacagctcatctgaccagatgaccacaggtaccaatgacaatgcagac
agcatgacgtccatgagcacaccgtcagagcctggtatctgccgtttcactgcctcgcca
cccaaaccccaagactacgatcgtggcaagaatgtagccgtgcccattccacaccgcgcc
aagagtgactactgcaacctacccctctacatgaagtcagatcccttcttccgaaagcag
tcggagcatcatgacccatgtccagtggttccaccacgtgaagcctctattcgtggcctg
gcccagcgggcataccacacccagggccgtcatgtgactatggactctgcaaagcagcag
gccctaaccatgggccactctggtctgtccaacctcacttcctctggggcttcctctgga
ggagccacaggcggttgtggtggaggtagtgggagtggagtggcatctgctagctctagc
agctccacacttcccctgaggactctcaccatgcctggatcctctgcctcagtggcccaa
agtgcagcggcagctgctgctgctactgctgctgcagcttctggggcattatcatcctcc
ggtggatgtggggcagtaggggccacaggagggacccctggaggtgcctcctcatcctcc
tccaagatgggaggatccagagactctctccttgagagcagctcctcgggcttaggcaga
ctacagaagcagagggatggaggggcaggagcctactccaagtcctacacactggtgtag
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