KEGG   Scomber scombrus (Atlantic mackerel): 133980449
Entry
133980449         CDS       T10651                                 
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ssco04812]
    133980449 (katnb1)
Cytoskeleton proteins [BR:ssco04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     133980449 (katnb1)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR5 WD40 Katanin_con80 WD40_Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st WD40_Gbeta EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_VPS8 WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N Beta-prop_LRRK2 PROPPIN Beta-prop_IP5PC_F RMC1_N VPS8_N Ge1_WD40 Tricorn_2nd WD_LRWD1 Beta-prop_IFT122_2nd DUF7165 Cytochrom_D1
Other DBs
NCBI-GeneID: 133980449
NCBI-ProteinID: XP_062275197
LinkDB
Position
1:complement(37399813..37418003)
AA seq 713 aa
MAAANTTKISWRLQEFEAHSSSVSCLALGKSSGRLLATGGQDCRVNIWAVSKANCIMSLT
GHKNPVECVQFNLSEEQVVAGSQSGSIRVWDLEAAKILRTLMGHKSNVTSLGFHPFGDFL
ASSSMDTNIKLWDVRRKGYVFRYKGHTQAVRSLAFSPDGKWLASASDDCTVKLWDLTQGK
TITEFRAHTAAVNIVQFHPNEYLLASGSSDRSTKLWDLEKFSMIGSLEGDTSPVRCLFFS
PDGGCLFSGATDSLRVFGWEPDRCFDVVPVGWGKVSDLAACNQQLIGVSHQLSSVSSYVV
DLKRVKKSGGSVIQGIIQDNQPLTEPKDPRGAALRRNYERPTTTCSTQRVKQSSDADRRS
PEGERRSPSEDEADDKNVSSAEIHNAEDFKEIFQPKNAISRTPPKISEPFPAPPEDETVL
AIGRHLKDMIAPFPDKQLTTPLASSTPVQRVEPTVVSCVKRPVSSPIAAPAFSNVSDPPP
HPHHPHPHHHHPHPQPAVTAAKTKPQPKIILSTRNEPIGLNVADFLPSSPNNRGVALSDE
EALSQIKKGHDTMCVMLSSRHKNLQTIRAVWAREDIKSALDTAVSMNDLSIVVDILNIIN
LQPSLWKLDLCTTILPQIDKLLQSKYESYMQTGCTSLKLIMKHFWMLISDTLKATPSVGV
DITREERHHKCRVCCKQLKNLSNMVKNKAVQVGRHGSVFKELQLLMAPLDDSL
NT seq 2142 nt   +upstreamnt  +downstreamnt
atggctgctgccaacaccaccaagatctcatggagactgcaggagttcgaggctcactcc
agcagcgtctcctgtctggctctggggaaaagctctggccgcctgctggccaccggagga
caagactgcagggtcaacatctgggccgtcagcaaggccaactgcatcatgagtctgact
ggtcataagaacccggtggagtgtgtccagttcaacctgtcagaggagcaagtcgtagct
ggttcacagtctggatcaatacgagtctgggacctggaggccgccaagattttaaggact
ctgatgggacacaaatccaacgtcaccagtctgggcttccatccgtttggagactttctg
gcttccagctccatggacacaaacatcaagctgtgggacgttcggaggaaaggatacgtg
ttcaggtacaagggacacactcaggctgtgaggagtctggctttcagtcctgatgggaag
tggttggcttcagccagcgatgattgtacagtgaagctttgggatctgactcaggggaaa
accatcacagagttcagagctcacaccgctgccgtcaacatcgtccagtttcaccccaac
gagtatctgctggcgtcaggcagctcggacagatccacgaagctctgggacctggagaag
ttttctatgatcggatctctggagggagacacgagtcctgtcaggtgtttattcttcagc
ccagacggcggctgtctgttcagcggagccacagactctctgcgtgttttcggctgggag
cccgaccgctgcttcgacgtggttccggtcggctggggcaaagtgtcggacctggcagcc
tgcaaccagcagctgatcggcgtgtcccaccagctgtccagcgtgtcgtcctacgttgtg
gatctgaagagggtgaagaagagcggcggctcggtgatccagggaatcattcaggacaac
cagccgctcacagagccgaaggatccgagaggagccgcgctgcgcaggaactacgagaga
ccaacaaccacctgcagcacccagagggtgaagcagagctcggacgctgaccggcggagc
cccgaaggagagcgacggagccccagcgaagacgaagccgacgataaaaacgtttcttca
gccgagatccacaacgcagaagacttcaaggagatcttccagcccaagaacgccatctct
cggactcctcccaagatatcagaaccgtttcctgctcctccagaagacgaaacagttttg
gcgatcggccgtcatctgaaggacatgatcgctccttttcccgacaagcaactgactact
cccctcgcttcctctactccggtccagcgggtggagccgacagtcgtctcctgtgtgaag
cgtcccgtctcttcacccatcgcggccccggcgttctctaacgtcagcgaccctcctcct
catcctcatcatcctcatcctcatcatcatcatcctcatcctcagcccgccgtcactgcc
gccaaaactaaaccacaacccaaaatcatcctgagcaccaggaacgagccgatcggactg
aacgtggccgacttcctgccttcgtctcctaacaaccgcggcgttgccctgagcgacgag
gaggctctgtctcagattaagaagggtcatgacaccatgtgtgtgatgctgagcagccga
cacaagaacctgcagacgatccgagctgtgtgggcgcgggaggacatcaagagcgctctg
gacaccgctgtctctatgaacgatctttctatcgtagtcgacatcctgaacatcatcaac
ctgcagccgtcgctatggaaactggatctgtgtacgacgattctccctcagatcgacaaa
ctgctgcagagtaaatacgagagctacatgcagaccggctgtacgtctctgaaactcatc
atgaaacatttctggatgctgatctctgacacgctgaaggcgacgccgtccgtcggagtc
gacatcacacgagaagagcggcatcataaatgcagagtttgctgtaagcagctgaagaat
ctgagcaacatggtgaagaacaaggcggtgcaggtcggtcgtcatggcagcgtcttcaaa
gagctgcagctgctcatggcgccgctcgacgactcgctctga

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