Scomber scombrus (Atlantic mackerel): 133980773
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Entry
133980773 CDS
T10651
Symbol
si:ch211-186j3.6
Name
(RefSeq) neural-cadherin
KO
K27892
neural-cadherin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Cadherin related
133980773 (si:ch211-186j3.6)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133980773
NCBI-ProteinID:
XP_062275557
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Position
1:complement(5338392..5671881)
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AA seq
2955 aa
AA seq
DB search
MIWVAFLPFLFSCAFGNKTVEQVPFFHGHVFENSSPGSRVNGLSVPLKRLISQRLCGTEE
PGSAAAHFKLMGDGSENFRVFAHHKRGHILLKTSGILDREERAEYALGLGLCCGQCPGLP
REGEEESPVVAEVASIKVDVLDTNDHQPVFPGADVKLSLDDATALRTAIYTVTARDDDSG
KNAELIYFVLPKNGSFYAVPKTGDILLVDSILGLNEPIKFQVFARDRGWPARTSQSIAVE
INPRQWPVAPSPNAEAGKQKTKPQIKVPARRSRSILESDSPVFINVSEDAGIGSVVMNLN
PVRFQSATFELVEPDVESSPVSVSRDSGDIVISRRLDRETEPLVEISVKVQDKRGSEWYL
VRVELTVTDVNDNVPEWSMVPAPYLAVVSPDTPAGSLVYKLLAHDGDEGNNGEVEYFLSD
GGDGRFEVDRKTGQVRTTGLPLQRDREYLLTVVAADRLGSRSAPAVVSVVAGARPPQFTN
TSFTIAIPENTPEGQPFLVTPAVSFQKKPISYSLLINPSSLFSISTETGEISLTRPIDYE
SDQHRYLLLVRASEGLESMSSAAEVRVVIIDENDCVPEFLQSIYSKDGVPETVTTATSLL
QVSASDCDSEENAELTYYTLSPDFTISSHGTIFPAGPLDYEKPNHLYEFVVMAIDKGEVP
RTGTTTVRIRMANVNDEAPEFSQHIYRTFVSEDAGPNTLVATVLAKDPDGDGITYKINTG
NEEGNFVIDSQKGLIRLRSSPPPRLQGVEYVLNVTATDDNASGGPQALSSTAQVIVGVDD
VNNNKPVFEKCQQYRESTSVLENQPAGTFVLQVHAVDADEGSNGRVTYGFMHKDSTVPAF
SIHPDTGVIVTARKFDRERQREYAVTVTATDQAADPLIGICQLNILILDQNDNSPKFENI
RYEYFLREDTMLGTSFLRVAAHDDDFGTNAAVTYSMSSDQPEYLRVNPLTGWVFVNQPIS
QRTYITREIVATDGGNRSSSVELAVTITNVKNQPPQWDKDSYSVVITENTVRDTAIVTIK
ATSPLGDPRVTYNLEDGMVPETNMPVRFYLTPNREDGSASILVAEPLDYETTRNFMLRVR
AQNVAAVPLAAFTTVYINVTDVNDNVPFFTSSIYEASVTEGAESGALVFQVSANDLDLGL
NGKISYSLLEDRSGDHQYFRIDPELGFIYTHTVFDRETKSSYLLEVQSVDGWESARPGKH
GQPNSDTAYVRVFISDVNDNKPAFAQASYEVDVDEDADVGFAIVTVSANDGDEGGNAKLR
YQITSGNTGGVFDVEPEVGTIFIAQPLDYEQNKRYKLHVLASDGKWEDYSTVTVNVVNKN
DEAPVFTVNEYYGSVTEELDGSPVFVLQVTATDPDKDADQEALRYSLHGQGAESEFIIDE
VTGKIYAQRTLDREERAVWRFVVLATDEGGEGLTGFTDIIINVWDINDNAPIFTCAPSCH
GDVSENSAAGTSVMEMTATDLDDSAVGQNAVLSYRIVGSLDATNIDVGGVPTFSEIFTIN
PTTGTITVAMSVLDREQVESYLLVVEARDGGGMTGTGTATILIKDVNDHAPRFTDHPCLA
RISENAEPNAEVLELTAEDKDTGENAQLTFSVVAGDQEQKFYMVSHKQEQRGTLRLKKRL
DYERHSEQRFNLTLKVEDLDFSSLLHCVVEVDDYNDHAPVFIPHFLSLAPLPEDITVGTS
VARLVASDSDSGQNRDITYSLLEDSDPDGLFTIDQSGVLSVARPLDRERISQHHLVVIAT
DHGVPPLTGSATVQLPLLDVNDNGPEFEAAYSPIVFENVAGPQVVRLNQTSTLIRAVDQD
SPENGPPFRFTVSPEYRHSNDFYLQDNLNGTATLTALRTFDRERQKEFLIPIIMSDSGRP
AKTVTSTLTVTIGDQNDHAHIAGEKKIFINSHRGRMPTTVLGKVYSPDPDDWDNKTYVFE
GHIPSYFILNKRTGFLIIKENAPPGTYQFQVRVSDEIWPDAVSTVTVHVRELRDEAIYSS
GSLRLADITAKEFIELRGKQRSRYELLVDFLSEMLSVPPDDVNIFSLMDVKERMLDVRFA
VHDGPSFLQPEKMHGYLAAHKQKLQSFLQVSVSQVRVDECPSSECAGSGGCTNILNVRDT
PTVVDCGTMSLVSVTVESTTVCSCQGREQTHQPCSAYPRNPCFNGGVCVDTQHGYRCQCP
AQFEGPECQQNKHSFHGNGYAWFPPMMPCFESHVSLEFITDVTDGLMLYSGPLAQLQAWD
HEDFMAIELIDGTPTLKINHGSGTAVLQLPGNVNVADRRWHRLDVRSNSKEVRFTLDRCA
GAAVMEMEGLGSWLTTEDHSSCEVTGITPNTDRHLNMSQVLQLGGVNEDIPYIYPQLQHK
HFTGCIRNLIVDSKLYDLGSPADSQSSSPGCLTTDSSCVNMGYPSCGHRGRCHGEWGSFS
CQCVPGYTGHQCEEEVPEYSFDGHSHVHYQLTSPLPARRTWVQVLVRTRKHSSSILSLIS
KEQSEYLRLEIFQGLLCVYYNLGDGDYNLTMPTYRLDNGEWHEIFLDRHDNEMTLRLDGG
GGQREVMGSQGRSREIVIDPSVVMLGNTFPSGINKSFQGCIRDLRLNGRYMPLDGQPRDG
VSQVSMQGLSQGCSSDSCKRNQCSPPFTCVDLWRVHECRCPPGHMVRVNGTKKSCVYTLC
ATRPCHRGTCVAQSPSKFTCHCPEGYRGRHCETTLAIYREDVGLSFSSLFAICICFMALL
VLLLGIFLYTRWRSYKGLKEGVYHVSAHHDGWEDIRENVLNYDEEGGGEEDQNAYDMAEL
QKSLQPSPAQSVQYCRSRALHHPPPPHHHHHHHLLHQATPAPPSAQQLDSLSRTASSTTL
PPSAASTSSTATTTTSLRRDVPPTRLPAQGQARPSQLARRSLSFSSQDLARYLCEIIRDA
DQHPDTGPFDSLQVFSTEGGGSPAGSLSSFSSAGLDAGSGGDAGGEGRREETLGEWGPRF
EKLRALYERAEASDL
NT seq
8868 nt
NT seq
+upstream
nt +downstream
nt
atgatttgggtcgcatttttgccctttttgttttcgtgcgccttcgggaacaagaccgtg
gagcaggtgccgttctttcacgggcatgtgtttgagaactcgtctccaggctcccgggtc
aacggactgagtgtccccttaaagcggctcatctcgcagaggctgtgtggtaccgaggag
cccggctcagcggcagcgcacttcaaactcatgggagatgggagcgagaattttcgtgtc
tttgcgcaccacaaacggggccacattttattaaagacttctgggattctggaccgggag
gagcgggctgaatacgcactgggtcttggtttatgttgcgggcaatgcccgggactcccc
cgggaaggggaagaggagtctccggttgttgccgaggtggcgtccatcaaggtggacgtc
ctggacacaaacgaccaccagcctgttttcccaggtgctgatgtgaaactgagcctggat
gatgccactgcgctccgcacggcgatctacacggtcacagcgcgggacgatgatagtggt
aaaaacgcggagcttatctactttgtcttgcccaaaaacgggagtttctacgcggtgccc
aaaaccggcgacatcctcttggtggactccatccttggtctgaatgaacctattaagttt
caagtgtttgcacgggaccgtggatggccagcgcgcaccagccagagcatcgccgtggag
atcaatccacggcaatggcccgttgcgccctcaccaaacgcagaagcggggaaacagaaa
actaaaccacagattaaagttcctgcacggagatccagatcaatactggaatcggacagc
cccgttttcatcaacgtgtccgaggatgctgggatcggttctgtggtgatgaacctgaac
ccggtgaggtttcagtcagccacgtttgagctggtggagccagacgtggagagctcaccg
gtcagcgtgagccgggacagcggggatattgtcatatcacggagactggacagagagacg
gagcctctggtggaaatctccgtcaaagttcaagataaaagaggttcagagtggtacttg
gtcagagtggagctgactgtgactgatgtaaatgacaatgtcccagagtggagcatggtt
cctgctccctacctcgctgtggtttcccccgatactcccgcaggctcgctggtgtacaag
ctcctcgctcatgatggtgatgaaggcaacaacggtgaagtggagtacttcctgtctgat
ggtggtgatgggcgtttcgaggttgataggaagaccggccaggtacgaactacaggtctt
cctctgcagcgggacagggagtacctgctgacagtggtggcagctgataggctgggcagc
cgcagtgcccccgccgtcgtctctgtggtggctggagcccggccgccacagttcaccaac
acgtccttcaccatcgccataccggaaaacacccctgaaggacagcccttcctggtcaca
cctgctgtgtccttccagaagaaaccaatcagctacagcctcctcatcaatcccagcagc
ctcttctctatctccaccgagaccggtgaaatcagcctgacccgacctattgactatgag
agcgaccagcatcgctacttgttgttggtgcgagccagcgagggcctggaaagcatgagc
agcgcagcagaggtgcgagttgttatcatcgatgaaaacgactgcgtcccagagttcctc
cagtccatatacagcaaggatggcgtaccggaaaccgtgacgacagctacctccctgctg
caagtgtcggccagtgactgtgactctgaagagaacgcagaactgacctattacaccctc
agtccagacttcaccatttcctcccatgggaccatctttcctgctggccctctggactac
gagaagccaaatcatctgtatgagtttgtagtgatggccattgacaagggggaggtccct
cgaactggcacaactacggtacggattcggatggctaacgtcaacgatgaggcaccggaa
ttctcccaacacatatatcggacgttcgtctcggaggatgcaggaccaaatacacttgtt
gccacagtgctggcaaaggacccagatggagacgggattacgtataagatcaacactgga
aatgaggagggcaactttgttatcgacagccaaaaaggtctgatccgtctgcgttccagc
ccacctcctcgcctgcagggtgttgaatatgtcctcaatgtaacagcaacggatgacaac
gcctcaggtggacctcaggccttgtcatccacggctcaggtcatagtaggagtcgacgac
gtgaataacaacaagcctgtttttgaaaagtgtcagcagtaccgagagagcacgtcagtc
ctggagaaccagccagcagggacttttgttctgcaggttcacgctgtggatgccgacgaa
ggctccaatggcagggtcacatacggcttcatgcacaaagactccactgtgccggcattc
agcatacaccctgacactggagtaattgtgacagccaggaaatttgaccgcgaacgccaa
cgggagtatgcagtgacagtgacggccaccgaccaggcagctgacccgttgataggcatt
tgtcagctcaacatcctcattctggaccagaacgacaacagtcccaagtttgagaacatc
cgatatgagtacttccttcgtgaggacaccatgctcgggactagtttcctacgggtggca
gctcatgatgatgactttggcacgaatgcagccgtcacatactctatgtccagcgatcag
ccggagtacctcagggtcaaccccctgacaggttgggtgtttgtcaaccagcccatctct
cagaggacttacatcaccagggaaattgttgctacggacggtgggaaccggagcagctca
gtggagctggccgtcaccattaccaacgtgaagaaccagcctccacagtgggacaaggac
agctacagcgtggtcataacggaaaacactgtccgagacacggccatagtgaccatcaaa
gccacctccccgctgggggatcctagggtaacatataatttggaggacggcatggtcccg
gagaccaacatgccggttcgcttctacctaacccccaaccgagaggacggctcggcctcc
atcctggtagcagaacccttggactatgagaccaccaggaactttatgttgcgtgtccga
gcccagaacgttgcagctgtcccattggcagcctttaccacggtgtacatcaacgtcaca
gatgtaaatgacaacgtcccatttttcacttcctccatctacgaggcctcggtcactgag
ggggcagagtcaggagctttggttttccaggtttcagccaatgaccttgacttgggtctc
aatggcaagatctcatactccctgctggaggatcgcagtggggaccaccagtattttcgc
attgacccagagttgggattcatctacacacatactgtgtttgaccgggagaccaaaagc
tcatacctgttggaggttcagtctgtggatggctgggagtcagcacgacctggcaaacat
ggacagcccaactctgacacggcatatgttcgtgtttttatcagtgacgtgaacgataac
aagccagcatttgcacaggcttcctatgaagtggatgtggatgaagatgctgacgtaggc
ttcgccatcgtcactgtcagtgccaatgatggggatgaaggtgggaacgctaagctgcgc
taccagatcacatcagggaacacgggaggggtgtttgatgtggaaccggaggtgggcact
atctttatcgcccagcctctggactatgagcagaacaaaaggtacaagcttcatgttctt
gcttcagatgggaagtgggaggattactcaacagtgacggtaaacgtggtcaacaagaat
gacgaggctccggtgtttaccgtcaacgagtactatggaagcgttacagaggagctagat
ggctcgcctgtctttgtgttacaggtaacagcaactgacccagataaggatgctgatcag
gaggcactgcgttactctctccatggccagggtgcagagagtgaattcataattgatgag
gtcacaggcaagatctacgcccagcggaccctggatcgcgaggaacgcgccgtttggcgt
tttgtcgtcctggccacagacgaaggtggcgaaggtctgacgggcttcaccgacatcatc
atcaatgtgtgggacatcaacgacaacgcacccatcttcacatgcgcccccagctgtcat
ggagacgtgtcagaaaactcagcagcagggacgtccgtgatggagatgacagccacagat
ctggatgactcagccgtggggcagaatgctgtgctctcatacaggattgttggtagtttg
gatgctaccaacatcgacgtgggaggagtgcccaccttctcagaaattttcaccatcaac
cccaccacagggaccatcactgtagccatgagtgtcctggaccgagaacaggttgaatcc
tacctcttggtcgtggaggccagagatggtggagggatgacaggaactggaactgcgacc
attctgatcaaggatgtgaacgaccatgctccaagattcactgatcacccctgtctggca
aggatctctgaaaatgcagagcccaacgcagaggtcctggagctcactgcagaggacaaa
gacactggggaaaatgcccagctgacctttagtgttgtggctggagaccaagagcagaag
ttctacatggtcagtcacaagcaggagcagcgaggcaccctgaggcttaagaaacgtctg
gactatgaacgacacagcgagcagaggttcaacctcacactgaaggttgaagacttggac
ttttccagcctcctgcactgtgtggtggaggtggacgattataacgaccatgctcccgtc
ttcatcccgcacttcctatccctcgccccgctgcctgaggacatcaccgttgggaccagc
gtggcacgtttggtggccagtgactctgactcaggccagaaccgcgacatcacttacagc
ttgttagaggattccgatcccgatggattgttcaccatcgaccagtccggcgtactctct
gtggcccggcctctggatcgcgaaaggatatcccagcatcacctggttgtcatagcaacc
gatcatggcgtcccacctctaacaggcagtgccacagtccagctgcctctcttggacgtg
aatgataacgggccagagtttgaggcggcgtactccccaattgtctttgagaatgtggct
ggaccacaggtagtaaggttgaaccaaacatcaaccctcatccgggctgtggaccaggac
tccccagaaaacggaccacctttccgtttcaccgtctccccggaatatcgccatagcaac
gatttctatctccaggacaacctgaatggaacggcgacactgacagctttgaggacgttt
gaccgcgagcgccaaaaagagtttctcattcccatcatcatgagcgacagcggccgtcca
gccaaaactgtgaccagcaccctgacggtaaccatcggcgaccaaaatgaccatgcgcat
atagcgggggagaagaagattttcatcaacagtcaccgaggacgtatgccaaccacagtg
cttggaaaggtctactctcctgaccctgatgactgggacaacaagacatatgtctttgaa
ggtcacataccaagttactttatcctcaacaagagaacaggcttcctaatcatcaaggag
aacgctccaccgggtacttaccagttccaggtccgtgtctccgatgaaatctggccagat
gccgtctctaccgtcaccgtgcacgtcagggagctgcgagacgaggccatctatagctct
gggtccctccgcctggcagacatcacagcaaaggagttcattgaactgagaggaaagcag
cggagccgctacgagctgctggtggacttcctctctgagatgctctccgttccacctgat
gatgtcaacatctttagcctaatggatgtgaaggagcgaatgctggatgttcgctttgct
gtgcacgacggcccctccttcctccagccagagaaaatgcatggctatctggctgctcac
aagcaaaagctccagtctttcctgcaggtcagcgtgtcccaggtccgagtggacgagtgt
cccagctcagagtgtgccggctctgggggctgcaccaacattctgaatgtgcgggacaca
cccaccgtggtggattgtgggaccatgagtcttgtgtctgtaacggtggaatctacaacc
gtgtgctcctgtcagggaagagagcagacccatcaaccctgctccgcgtatcccagaaac
ccctgtttcaatggtggcgtatgtgtggatactcagcatggctacaggtgccaatgccca
gctcagttcgaggggcctgagtgccagcagaacaagcacagtttccacggcaacggctat
gcctggtttccaccaatgatgccctgttttgaaagccacgtgtcactggagttcatcaca
gacgtgactgatggactgatgctgtacagcggccccttagcccagctgcaggcctgggac
cacgaggacttcatggctatagagctaatagatgggacccccaccttgaaaatcaaccat
ggctccggcacagcggtgctacagttgcctggcaacgtgaacgtggcagacaggcggtgg
catcggctggatgtccgcagcaacagcaaggaagtacgtttcaccctggatcgctgtgca
ggggcagcagtcatggagatggaaggactgggcagctggctgaccactgaagaccactcc
tcctgtgaagtgaccggcatcacacccaacactgacagacacctgaacatgagccaggtg
ctccagctgggcggcgtgaacgaggacatcccctacatctacccacagctccaacacaaa
cacttcaccggctgcatccgcaatctcatcgtggacagcaagctgtatgatttgggctcc
ccggctgactcccagtccagttctccaggctgcctgaccactgatagcagctgtgtcaac
atgggctatccgtcctgtggccaccggggtcgctgtcatggcgagtggggctccttcagc
tgccagtgtgtgccaggatacacaggacaccagtgtgaagaggaggtcccagagtattct
tttgatgggcacagtcacgtgcactaccagctgacgtccccgctgccagcccggaggacg
tgggttcaagttctggttcgaacccgcaaacacagcagcagcatcctcagtctgatctcg
aaggagcagagcgaatacctacgactggagatctttcagggtctcctctgtgtttactac
aatcttggtgatggggactacaacctaaccatgcccacctatcgccttgacaacggtgaa
tggcatgagatcttcctagatcggcatgataatgagatgacactgagactggatggtggt
ggaggacagcgggaggtgatgggatcgcagggccggagccgagaaattgtcattgaccca
tctgtggtgatgcttggaaataccttcccatctggaatcaacaagagctttcagggctgc
attagagacctacgcctcaatgggcgctacatgccactggatggtcagccgcgtgatggg
gtttcccaggtcagcatgcagggcctctcccaggggtgctcgtctgactcctgcaaaagg
aaccaatgtagcccccctttcacctgtgttgacctgtggagagtgcacgaatgcagatgt
ccccccggtcacatggtccgcgtgaacggcaccaagaagtcctgtgtgtacacgctgtgc
gccacgcggccgtgtcacagagggacctgcgtggcccagtcgccctccaaattcacttgc
cactgcccagaaggttacaggggacgccactgtgagaccactctggccatctacagggag
gacgtgggcctgagcttcagctccctcttcgctatctgcatctgcttcatggccttatta
gtgctgctgctgggcatcttcctgtacacccgctggaggagctacaaagggctgaaggag
ggcgtctaccacgtgtcggcccaccacgacggctgggaggacatccgagagaacgtcctc
aactacgacgaggaggggggcggggaggaggaccagaacgcctacgacatggcagagctg
cagaagtctctccagccgagcccggcccagtcggtccagtactgccgctccagagccctg
caccacccaccgcctccccatcaccaccaccaccatcacctcctccaccaggcgaccccc
gccccgccctccgcccagcagctggactccctcagccggacggccagctccaccaccctg
cccccttcggcggcctccacctcctccacggccaccaccaccaccagcctccgcagggac
gtcccccccaccagactcccggcccagggtcaggcccggccctctcagctggcccgccgc
tccctgtccttctccagccaggatctcgcacgctacctgtgcgagatcatccgcgacgcc
gaccagcaccccgacacggggcctttcgactccctgcaggtgttctccacagagggcggg
gggtcgcccgccggctccctcagctccttcagctcggcggggctggacgcggggagcggc
ggggacgctggcggtgagggcaggagggaggagacgctcggggagtgggggcctcgcttc
gagaagttacgggcactttacgagcgagccgaggccagcgacctctga
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integrated database retrieval system
