Scomber scombrus (Atlantic mackerel): 133980781
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Entry
133980781 CDS
T10651
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03030
DNA replication
ssco03420
Nucleotide excision repair
ssco03430
Mismatch repair
ssco03440
Homologous recombination
ssco03460
Fanconi anemia pathway
Brite
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133980781 (rpa1)
DNA replication proteins [BR:
ssco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133980781 (rpa1)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133980781 (rpa1)
MMR (mismatch excision repair)
133980781 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
133980781 (rpa1)
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Ortholog
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Other DBs
NCBI-GeneID:
133980781
NCBI-ProteinID:
XP_062275565
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Position
5:complement(18201190..18238429)
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AA seq
600 aa
AA seq
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MTKLSEGAIEALSNGNGGNDAVLQLVNIRKIDGGNGPARFRVMMSDGQHSLSSFMLSTQL
NFMAEENKLAPNCICILKRHVTNILKDGRRVVIILEIDIIKSAEDVGGRIGDPTPYSEGQ
NKGTKPAPNPVTRPPLQAQNTNEGNRGFNRDFGKKASSAMPSTPGGSSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLIEVGKV
YYISKGSLKIANKQYTSVKNDYEMTLNGDSSVIPCEDSCDVPMVQCDFVSISDLENREKD
AIVDVIGVCKTVDEVTRLTTKTNREVSKRTLNLMDMSGKVVSVTLWGEEAEKFDGSGQPI
LAIKGAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGWYDSEGHAMDGQSLTEMKGGSG
GGNTNWKALSDVKNEHLGHGDKADYYSCLATIVYLRKENCLYQACPSQDCNKKVVDQHNG
MFRCEKCDKEFPNFKYRLILSANIADFGDNQWVTCFQESAEAILGQNAAYLGQLKESNEA
AFDEIFQQANFNTFVFRTRVKLETYNDESRIKATVMDVKPVDHKDYCKRLIMNIRKMAAQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaactgtcagagggtgcgatagaggctctgtcaaatggaaacggtggcaacgac
gcagtgcttcagttggtgaacatccgcaagattgatgggggaaacggtccagctcgcttt
cgggtgatgatgagtgatggacagcacagtctgtcgtccttcatgctgtccacccagctg
aacttcatggcagaggagaacaaactggccccaaactgcatctgtatcctcaagaggcat
gtgaccaatatactgaaagatggacgacgtgtggtaatcattttggaaattgatatcatc
aagtctgctgaagatgttggtgggagaatcggagaccccacaccttactctgaaggtcag
aataaaggcacaaagccggctccaaaccctgtaacccgccctccactgcaggcacaaaat
acaaatgaagggaacagaggattcaatagagattttgggaagaaggcctcgtcagctatg
cccagtactcctgggggtagctccaaagttgtgcccattgccagcctcaacccctaccag
tccaagtggacaattcgtgctcgtgtaaccaacaagagcagtatccgtacatggagcaac
tctcgtggtgatggaaaacttttctcaatggagattgtggatgagagtggagaaataaga
gtgactggtttcaaccaagaggtggacaagttcttcagccttatcgaggttggcaaggtc
tactatatctccaagggctccctaaagatcgccaacaagcagtacacatcagtgaagaat
gactatgagatgacactcaatggagactccagtgtcatcccctgtgaagacagttgtgat
gttcccatggtgcagtgtgactttgtctccatcagtgacctggagaacagagaaaaggac
gccattgttgatgtgattggagtgtgcaagactgtggatgaggtgacccgtctcactacc
aagacaaaccgtgaggtatccaagaggacactcaatctgatggacatgtctgggaaggtg
gtgtctgtcacactgtggggagaggaagcagaaaagtttgatggctctggacagccaatt
ctagccattaaaggggcgaagctctcagactttggaggtcggtctctctctgcatccttc
agcagcaccatgatgatcaacccagacattcctgaggcatataagctcagaggctggtat
gacagtgagggtcatgccatggatggacagtctctgacagagatgaaaggtggcagcggg
ggaggaaacaccaactggaaggctttatctgatgttaagaatgagcacctgggacatgga
gacaaggcagactactactcctgcctagctaccatagtgtacctgcgcaaggaaaactgc
ctttaccaggcctgcccaagccaagactgcaacaaaaaagtggtagaccagcacaatggc
atgttccgctgtgaaaagtgtgacaaagagttccctaacttcaagtaccgcctcatcctt
tctgccaacattgcagattttggggacaaccagtgggtgacttgcttccaggagagtgca
gaggccattcttggccagaatgcagcttacctggggcagctcaaggagtcgaatgaagct
gcttttgacgaaatcttccaacaagccaacttcaacacttttgttttccgcaccagagtg
aagctagaaacatataacgatgaatccaggatcaaggctacagttatggatgtgaagccc
gttgaccataaggactactgcaagaggttgatcatgaacatcaggaaaatggctgctcaa
tag
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