Scomber scombrus (Atlantic mackerel): 133980879
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Entry
133980879 CDS
T10651
Name
(RefSeq) protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133980879
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Cadherin related
133980879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_pro
RET_CLD1
CADH_Y-type_LIR
NOMO_3rd
TMEM154
Motif
Other DBs
NCBI-GeneID:
133980879
NCBI-ProteinID:
XP_062275706
LinkDB
All DBs
Position
5:complement(20631709..20705141)
Genome browser
AA seq
3282 aa
AA seq
DB search
MKTAAKGLGKSVMNPLHREGWWSRRIVLMVYVALELVTVHSPVVLGTLDLQLDEEQPAGT
IVGDISAGLPTGEKASMYFISDHEGTGVGSDLDIDESTGIIKTAKVLDRELRDRYNFIAV
TMRGVTVEVTITVNDINDHTPTFPRKRATFKIPEQTAIGTRFPLEPAVDADKGQFTTQGY
LIKDGNVGQAFTLETRRGSNEVLYLDLVVNAILDREKRSTYTLSLEAFDGGSPKRTDQMI
LDIAVQDINDNAPFFNQSRYHAIISENLQPGSNILQVFATDADEGDNGMVLYEINRRQSD
PDRYFVIDTRTGIITLNKPLDFEMRRVHELVVQAQDNATQPEVTNAFVTIHVRDYNDNQP
TMTIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFGLTTKDNI
IYLICVDRILDREERDTYELRVMATDSGTPPLRAESSFIIQVTDVNDNPPLFDQPVYRQV
IPEVVFPGSFVLQVTARDKDQGPNGDINYSILKDKGAFSNWFSIDSVTGIITTLSQLDYE
KNPNPSITVLATDGGKPPLSSTAVVKIVLQDINDNEPVFERNFYNMSIKENTAPGTCILE
VTATDADGGSFGSITYSLGSGINSAVPSQFTIGKETGQICTSTVLDRDQGLASYDFTVTA
VDGGGLSSVTYVKVDLVDINDNRPAFYPVSYAVSLSTQSAPGTSVVRVTAYDPDSGENGR
ITYKTVPGGASPYFTLNKDTGVISLSRSVYGKANSVIPMVISAQDGGGLVALVNARVNIS
VVAGLVAPPVFEQNQYYFTVLEDVLQGTVVGIVQASTKTGTSKDISYTISSGDPAGYFTV
DPDTGALRTSLSLDHEAQSALDLEVQARSGNPPAFGQTRVHITIADVNDNPPVFLPSSSE
SLLLPEHTEMGTVVYRVQAEDRDSGANGQLTFDLSAPSGIQRTFSIERSTGEIRLVGSLN
YESAPRYDLQVLAKDSGVPQFSVTFMLVVHVQAENDQGPVFDTLTYRVELKEGTPINTRF
LQVRALNRETPGVGHFSPLAYHLHPDGDAAGFGIAADSGWLFVKSALDREVKDMYLLTVL
ASAGHGQWKKTGSATVRISVTDENDNSPRLPQERVFMAVRENLPVGTGFGHVSATDRDSG
PNGRLSYRLLHPDRNFQINSHTGEISTRTTLDREQQSSYQLVVVVQDGGSPPRSATGTAF
VTVLDDNDNDPAFILSQSGKNLIIKVSEGQSSGVLLGTLQAKDPDEGENGTIFYSLSGPR
AERFSLNPNTGELRSSSPLSHSERAEYTLTVTATDRGLPPRSTSCSLTIQVLSINRPASK
TNSLSISFNSVEEAKPGSVIGSVRLHDRETPEEGKVTYTVVGGTDRDGTFVVDRLTGDVY
LARPLDYERDMRYTLKIEVDDFSQDPPSSTLVHLDIDVEDSNDHAPQFPEDPITIVISES
MQPSSSVYTFQATDKDGSGPNSELRYSILHQWPNTPSLLTLDPSTGVLSLAQELDHEVTS
NLILVVKATDSALDASQRRWGSVTARVYVTDENDNPPVFSSPTAVSVMEDQPVGFVALYV
MARDADQGENGRVTYTIQSGNTGGTFSLNPNTGSLSIFKPLDREEQDVFNLTIIAEDHGI
PQHSSSQLLCVHVIDVNDEVPWFEESQYEAQISENQPSGTSLLTVSASDLDQGTNGQVTY
GGISVEGFSINPVTGVITNTKSLDRELQEYYTVTVYAKDGGLPPNYAKATVKIRVLDEND
NAPVFGRLYYSIEVPENLEAVLLFTLRATDQDTGDSGEMNYRITAGDPSGDFHLDRQSGA
LSTSRLLDREKKAGYTLIVTAQDQGKPSLSGTATVEVTILDINDHSPQFQSNTYTADVSE
DVPIGSLVLEVKAIDLDHGPNSQVQYFLSHGSQSMFIIDQNTGRIITAAPLDRERVASYT
FEVCASDSSPANPRNSTTQVTVYIQDVNDNAPFFIQDPLIVNISASSVSNRRVLATMRAE
DKDFGANGSVFYRFANPVRGFTINSLTGDIQATEKLQTLTQSQRTLIVQAMDQGNPAQSS
LGVVIIYIREQTYRGIRFSRTARDVSLQENAAKGTVVTQTQAQYPDGSQTGISYSLFSGN
RMQSFGINTLTGEIWVQKSEGLDFEETPKLRLVVKAETASSSSYMAVNLILQDVNDNLPR
FQLQNYVAYIREAQGYDFPIIQVAADDLDQGQNGQVTYSIRSSSMSGLFKIDPLTGSITT
AAIMDREIWPQTKLVVTATDRGTPRLAGSATLTVIIIDLNDNSPTIPLPRQIRVPEDTLI
GTVITQVTGNDVDSGPALSYTLHLDRNTEGMFGIHRYGGGVSLTGPLDYEERTWYTLTIR
SSDSKHQSEANLTVLVDDVNDNAPTFTQDFYQVTVSEHLPSGSAVITVTATDRDTGENGK
ITYRVMSSTRGVFYIDPSNGTLFVNQKTVFDFENPSILVVIEARDQGTPSLSSIATVQVQ
VSDVNDNAPIFHQSEYRATVSEDGLPGSTVLTLEAVDGDLSRDNCGFDFAIASGNSGNAF
QIESSVHFLEGRGFQTVGSLILVEELDFEAMPSYNLTVVVSDRGIPQRSSSVPILISVTD
ANDNPPVFSRAEYSVVLSEGAAAGTEILHLSATDPDSAPNGEVQYYISSGDETDLFQVDR
WTGALKLQRPLDSERQLSHMIVVQATDGQGHYALVPVSIEVKDINDNRPFFPLKLVTASI
RENQPQNALVTMLHAIDHDKGVFGQLKYYMLDNSKDGREAFLINQTSGEVRTRSTFDFEK
GNSFHFMAVAIDAGNYSATVTVQVYVTGEDEYDPVFTSSEFSFEVPEGAKKGQIIGKVQA
KDEDGGVDGIVLYSLADSSPYFEVNKSTGEISLKMDSYSRHVGRAKREVRLMTLDVTAHS
PLETSRMAMAKVTVDVTHTFFGLTTDMNMMLVSIIAVSLGTIVILIIIAVALCFVKLKRQ
KKEQKAQRRTPASGTMMHKLEETKIAANEIIYHQTLPGYAAVQSTTSGGPYTRGGSLDPS
HSSGRGSAEAEAAEDDEIRMINEYPRVSSISSSMQERISARGPDSGIQQDADQLSDVSCE
PSIDWFKGKKLGSLNETILAGQVPVYRDEGGGYVGVGRGLSISHPKDYTFPEDGKPAVDG
SLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDETAPPNPRRSFHHKAKA
ESRIDPPPLITSVAHPGAKTVPPKPAVGRTFPHLASLRRSPISGEGSISSVAMSPSFSPS
LSPLAARSPAITPFSVSQGPSASMISTTEHNLEHIEEAELRI
NT seq
9849 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagctgccaagggtttggggaagtctgtaatgaaccctttgcaccgtgagggt
tggtggagcagaaggatagtgctgatggtgtatgtcgccttggagcttgtaacagtccat
tcacctgtggtcctagggacccttgacctacagcttgatgaggaacaaccagcaggcaca
atagtaggtgatatcagtgcaggacttcctactggcgaaaaagcctctatgtacttcatc
tccgaccatgaaggcacgggcgtaggcagtgatttggacatagatgagagcactggcatc
attaaaacggcaaaggttctggacagagaattgagggatagatacaacttcattgcagtt
accatgagaggtgtgacagtagaggtgaccatcacagtgaatgacataaatgaccatacc
ccaacgttcccaagaaaacgcgctacctttaaaattcctgaacagacagccatcggcacc
aggtttcctcttgagccagctgttgatgctgataaaggccagttcacgactcagggttac
cttatcaaggatggaaatgttggtcaggcattcaccttggagaccagaaggggaagcaat
gaggtcctctatctggacttggtggtcaatgccattctggacagagagaaaagatccacc
tacactttatctttggaggcctttgatggtggttcccctaaaaggactgatcagatgata
ttagatattgctgtacaagacattaatgacaacgctccttttttcaaccagagccgctac
catgccataatatctgagaacctacaaccaggaagcaacatcctgcaggtgtttgctaca
gatgctgatgaaggagacaatgggatggtgctgtacgagatcaacaggagacagagtgac
ccagatcgttactttgtcatcgacactcgcaccggcatcatcaccctcaataagccactg
gactttgagatgaggagagtccatgagctggtggtccaagcacaagacaacgcaacccag
ccagaggtgactaatgcctttgtcaccattcatgtcagagactacaatgacaaccagcct
acaatgactatcatcttcctcagtgaggatgggtctcctcgaatctcagagggtgcacag
ccaggccagtatgtagccaggatctcagtcacagacccagactatggagagtatgccaac
gttaatgtgtcacttgagggaggagatggaaagtttggcctgacgacgaaagataatatc
atctatctgatctgtgtggacaggattctggatcgggaggagagagacacatatgagttg
agggtgatggcaacagattcaggcacgccgcctctcagggccgagtcctccttcatcatc
caggtgactgatgtaaatgacaaccctcctctgtttgatcaaccagtgtatagacaggtt
atccctgaagtggtatttccagggagctttgtgttacaagtgacagctagagacaaagac
cagggccccaatggggacattaactacagcatcctgaaagacaaaggtgctttctccaac
tggttcagcatagactctgttacggggattatcactactctctcccagctggattatgaa
aagaaccccaatcccagtataactgtgttggcgacagatggaggaaaaccacctctgtcc
tctactgcagtggtcaaaatcgtacttcaggatataaatgacaatgagcctgtttttgag
aggaacttctacaatatgtccatcaaggaaaacacagctccaggaacttgcattcttgag
gtcactgcgacagatgcggacggcggctcttttggctccattacctactccctgggctct
ggcattaacagtgctgttccctctcagttcaccattggcaaggagactggacagatctgc
actagtactgtactagacagagatcaagggctggccagctacgacttcactgttactgca
gtggatgggggtggactgagctcagtaacctatgtgaaggtggatctggtcgacattaat
gacaacagacctgctttttacccagtgagctatgctgtcagtttgagcacacagagcgcg
cctgggacgtctgttgtcagagtgacggcctatgacccagactcaggcgagaatggcaga
ataacatacaaaactgtacccggaggggcctccccttacttcactctcaacaaagacact
ggtgtcatttccctgtctcgctctgtgtacgggaaggccaactctgtcatacccatggtg
atctctgctcaggatggtggaggtctggttgctctcgttaatgccagggtgaacattagt
gtggtggcaggtttggtggcaccaccagtttttgaacagaatcagtactacttcactgtt
ttagaggacgtcctgcaggggacggtcgtaggcatcgtccaggccagcactaagacaggc
acctctaaagatatctcctacaccattagttctggggaccctgcaggatactttacagtg
gatcctgacactggggccctgaggaccagtctgtctttggatcatgaagcccagtcagct
cttgatttggaggtgcaggcccgcagtggcaacccccctgcctttggccagacccgtgtg
cacatcaccatcgcagacgtcaatgataatccgcctgttttcctgccctcatcctcagag
tccctgctgctgccagagcatacagaaatgggtactgttgtgtatcgtgttcaagctgag
gacagagactctggagccaatggacaactcacctttgacctgtctgcaccaagtgggatc
cagaggacctttagcatagagcgcagcactggagagatacgattggtgggcagcctcaac
tatgagagtgcaccccgttacgatctccaagtcctcgccaaggatagtggagtgccccag
tttagcgtcaccttcatgcttgtggttcatgtccaggcagagaatgaccagggacctgtg
tttgataccctgacctaccgggtagaactaaaagaaggcactccaataaatacacgcttc
ctgcaagtcagggctctgaacagagaaacacctggcgtaggtcacttcagtcccctggca
tatcacctgcatcctgatggagatgctgctgggtttggcattgctgcagacagtggctgg
ctgtttgtaaaaagtgccctagacagagaagtcaaggacatgtatcttctaacagtactg
gccagtgctggtcatggacagtggaagaagacgggcagtgccacagtgcggatatctgtg
actgatgagaatgacaactctcctcggctcccacaggagagggtcttcatggctgtgaga
gaaaacctgccagtgggtacaggcttcggtcatgtgtcagccacagaccgagacagtggt
cccaacggacgcctcagctaccgcctgctgcatcctgaccgcaatttccagataaactcc
cacacaggtgagatcagtacaaggacaactctggatagagagcagcagtctagttaccag
ctggtggttgtggtacaagacggaggttccccccctcgtagcgctacaggcacagccttc
gttactgtcctggatgacaacgacaatgacccagcttttatccttagccagtcgggaaaa
aacttaatcataaaggtgtcagaaggacagtcctctggggttctactgggcacactgcaa
gccaaagatcctgatgaaggagagaacggcaccatattctactcattgtcaggtcccagg
gctgagcgtttctctctgaacccaaacactggtgagctgcgttcatcatcccccctcagc
cattcggaacgagccgagtacaccttgacagtgacagccactgacagaggactgccccca
cgcagcacctcctgctccctcaccattcaggttctcagcattaacagacctgcttcgaag
accaattcactctctatatctttcaactctgtggaggaggccaagcctggctctgtcatt
ggctcagtccgcctccatgacagagaaactccagaagaggggaaagtgacctacacagtg
gttgggggtacagacagagatgggacctttgtcgtagatcgtctgacaggagatgtgtat
ctggctcgtcctcttgactatgaacgagacatgcgctacaccctgaagattgaggtagat
gacttctcccaggaccctcctagcagcaccctggtccacctagacattgacgtagaggac
agcaatgaccacgcccctcagttccctgaggaccccattactatcgtcatctctgagagc
atgcagcccagctcctctgtctatactttccaggccacagacaaggatggcagcgggccc
aatagcgagctgaggtactccattctccaccagtggccaaacacgcccagtctactaacc
ctcgacccctccactggggttctatccttggcccaggaattggatcatgaagtcacctcc
aacttgattcttgttgtaaaggcaacagactctgccctcgatgccagccagaggcgctgg
ggctcagttacagcgagggtctatgtaaccgatgagaacgacaatccaccagtgttcagc
tcgccaacagctgtcagtgtgatggaggaccagccggtaggctttgtggcactgtatgtt
atggccagagatgcagaccaaggggagaatggccgggtgacctacaccatccagtcaggc
aacacagggggaacattcagcctcaaccctaacacgggctctctgtctattttcaaacct
ctggaccgtgaggagcaggacgtctttaacctcacaataatcgcagaggatcatgggata
ccccagcactcatccagccagctgctgtgtgtccacgtgattgatgttaacgatgaggtg
ccctggtttgaggagagccagtacgaagctcagatctcagagaaccagccttcaggaact
agtctgctaacagtgtctgcctctgacctggaccaaggaaccaatgggcaggtgacatat
ggaggtatctcagtggaaggcttcagcatcaacccagtgacaggtgttataaccaacact
aagtcactggacagggagcttcaggaatactacactgtgacagtttatgcaaaagatgga
ggccttccccccaactatgccaaagccactgtgaagatcagagtacttgatgagaatgac
aacgcccctgtctttggacgtctttactacagcatagaagtgcctgaaaacttggaggca
gtgcttcttttcactcttagagccactgatcaggatacaggagacagtggggagatgaac
tacagaattacagctggagacccctcaggagacttccacttggatagacaatcaggtgca
ttatccacctcaaggctgctggatcgggagaagaaagcaggttatacactgatagtcaca
gcccaggaccaggggaaaccttctctcagtggcaccgctacagtggaagtgaccattctg
gacataaatgaccacagcccccagtttcagagcaacacatacactgcagatgtgtcagaa
gatgtacccataggctcgctggttttggaggtgaaagccatcgatctggaccatggcccc
aacagccaggttcaatactttctgagccatggctcccagagcatgttcatcatagaccag
aacacaggccgcataatcacagcagcacccctggacagagagagagttgcgtcttatacc
tttgaggtgtgtgccagtgactcctcccctgccaacccacgcaactccaccactcaggtg
actgtctacattcaggatgtaaacgacaacgctcctttcttcattcaggacccacttatt
gtgaacatatctgcaagcagtgtgtcaaaccgcagagtgctggccaccatgagagcagag
gacaaagactttggggctaatggctctgtgttttatcgctttgctaaccctgtgagaggc
ttcaccatcaattcactaaccggagacatccaggccaccgagaagctacagactctgacc
caaagccagaggactttgatagtgcaggccatggaccagggcaacccagctcaatcctcc
cttggggtggtaatcatttatatccgggaacagacctacagggggattcgcttctctcgc
acagctagagatgtcagtctgcaggagaatgcggctaaaggcacagttgtaacacagact
caggcccagtatcccgatggttcccaaactggtatcagctacagtcttttcagtggaaac
agaatgcaatcttttggaataaacactcttactggagaaatatgggtccagaaatcggaa
ggactagactttgaggagaccccaaaactccgccttgtggtgaaagctgagacagcatcc
tccagctcctacatggctgtcaacttaatccttcaagatgtcaatgacaatttgccacgc
ttccaactccagaactacgtggcgtacattagagaggcacagggctacgattttcccatt
atccaggttgcagcagatgacctggatcagggacaaaatggtcaggtgacctattccatt
aggtcatcatccatgagtggcttgttcaagattgacccactgactggtagcatcaccact
gcagccataatggacagagagatctggccgcaaaccaagcttgttgttacagcaacagac
cggggaaccccacggctggctggctctgccaccctcactgtgatcatcatcgacctgaat
gacaacagtcccacgattcctttgcctcggcagatccgagtgcccgaggacactctgatc
gggacagttatcacccaggtaacaggaaatgatgtggactctgggccagctctctcctac
acactacacctggatagaaacactgagggcatgtttgggattcatcgttatggaggtggc
gtgtctcttactggcccactggactatgaagaaaggacatggtacactttgactattcgt
tcgtccgactctaaacatcaaagtgaagccaatctgactgtgctggtagatgatgtgaat
gataatgcccccaccttcacccaggacttctatcaggtgactgtatcagagcacctccca
tcaggcagcgcagtcatcacagtaacagctactgaccgtgacactggggagaatgggaag
attacctacagagtgatgtcatcaactagaggcgtcttttacattgacccaagcaatggt
actctgttcgtcaaccaaaagacagtgtttgattttgagaatccctccatccttgtagta
attgaggctcgggaccaaggcactccatccctttcatccattgcaactgtccaggttcaa
gtgtccgatgttaacgacaatgccccaatctttcaccaatcggagtacagggcaaccgtg
tccgaagatggacttcctggatccactgttctgaccttagaagctgtggatggggacctg
tcccgggataattgtggttttgactttgccattgccagtggtaactcaggtaatgccttc
cagattgaaagcagtgtgcacttcttggaggggaggggcttccagacagttggcagtctg
atccttgtggaggagctggattttgaagcaatgccaagttataacctgactgttgtggta
tcagatcgtgggatccctcagcgtagctccagcgtacctatcctcatcagtgtcacagat
gccaacgacaaccctccagttttcagccgagcagagtacagtgtagtactgagtgagggt
gcggcagcagggacagagatcttgcatctatctgccactgatccagactctgctcccaat
ggagaggtgcagtactacataagctcaggggacgagacagaccttttccaggtggaccgg
tggaccggtgccttgaagctgcagcgacctttggacagtgagaggcagttgtcccatatg
attgttgtccaggctactgatggtcaaggacactatgctttggtcccagtcagtattgag
gtaaaggacatcaacgacaaccggcccttctttcccctcaagctagtaactgctagcatc
agggaaaaccaaccccagaatgccttagtcacaatgctgcatgcaatcgaccatgacaaa
ggtgtttttggacagttgaagtactacatgctagacaactctaaagatggaagagaggcc
ttccttattaatcaaacttcaggagaagttcggactcgctctacttttgattttgagaaa
ggaaactccttccattttatggctgttgccatagatgctggcaactattctgctacagtc
acagtgcaggtttatgttacaggagaggatgaatatgatcctgttttcacttcctcagag
ttctcgtttgaagtgcctgaaggagcaaagaaaggtcagataattggcaaagtgcaagca
aaagatgaggatggaggcgtggatggcattgttctttactccttagcagacagttcgcct
tattttgaagtcaataaatcaacaggtgagatttccttaaagatggacagctacagtaga
catgtgggtcgcgctaaaagagaggtgcgtctaatgacactggatgtgactgcccacagc
cctcttgagacgtcccgcatggcaatggctaaggttaccgttgatgtgactcatacattt
ttcggtctcaccacagacatgaatatgatgcttgttagcatcattgcagtgtcacttggg
acaatagtcatactgattataattgctgtggcactatgttttgttaaattaaaacgccag
aagaaggaacaaaaagcgcaaagacggacaccagcatcaggcaccatgatgcacaagctt
gaggaaacaaaaatagcagcaaatgaaattatttaccatcagacccttcctggatatgca
gctgttcagagcaccaccagtgggggtccgtacactcgagggggatccctggatccctca
cactccagtggacgtggctcagctgaggcagaggcagcagaggacgatgagatcagaatg
ataaatgaatatccccgtgtgtcaagtatttcctcctctatgcaggagcgcatctctgcc
cgaggtccagactctggaatccagcaggatgcagatcagctatcagacgtgtcttgtgag
ccttccatagattggttcaaagggaagaaactgggtagcctgaatgaaactatattggct
ggccaggtgccagtctacagggatgaggggggtggatatgtgggtgtaggacggggactc
agcatctcccaccctaaagactatactttcccagaggatggaaagcccgctgtagatggc
tccctgacagccattgtggccagtgatgaggagctgaggggcagctataactgggactac
ctgctaaactggtgtccccagttccaaccattagctaatgttttcactgaaattgcacgt
ttaaaagatgaaacagctcctcctaatcctcgcaggtcatttcatcacaaagcaaaggcc
gagtcaagaattgaccctccacctctcataacctcagtggcccaccccggcgccaaaact
gtaccgccgaagcctgccgtagggaggactttccctcacctggcttctttacggagatct
cccatcagtggcgagggatccatctcttcagttgccatgtctccaagtttctccccttcc
ctctcaccactggcagcacgttctccagcgatcacaccattcagtgtttcacagggcccc
tctgcatccatgattagcacaactgaacataatctggagcacatcgaggaagcagagctg
agaatttaa
DBGET
integrated database retrieval system
