Scomber scombrus (Atlantic mackerel): 133981002
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Entry
133981002 CDS
T10651
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03440
Homologous recombination
ssco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133981002 (brca2)
03460 Fanconi anemia pathway
133981002 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
133981002 (brca2)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133981002 (brca2)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133981002 (brca2)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133981002 (brca2)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
133981002 (brca2)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
133981002 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
133981002 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
BRCA2_TR2
Tower
Motif
Other DBs
NCBI-GeneID:
133981002
NCBI-ProteinID:
XP_062275871
LinkDB
All DBs
Position
5:20079057..20092532
Genome browser
AA seq
3091 aa
AA seq
DB search
MDLPSESMYDTFKDDIWGELGPLDHDWFDVLTAQAVKSEGNFSDQDDLCAFKEGNFKTPF
DETAVESQLFSTPKVFRHRRVVSPEAKDEQSFTAEPEKETLPWTRSPYIQISKEGVPGSK
YEGVHPQAEESFDLLQTPHKSPVSYAKHISESLGAQIHSDISWTSSLNTPSAVPSTLILS
KTDESPCPVNLFEDQSVVFVRKLFPSLSNASRVGTVSPKHSDLMPPMIQEGAESPEAGQN
PEPHNSPSHSSHIQSDVWKQKLPDAIEDGEICSTVANVFDGAENVLSVFFSNSSSALRKV
KTDRIKRKQIISAKEPGCSSTHISTKNTAASSGQRTPDRQPCRAPLSPHLKSPVKTGDIG
TTQWSPLSLSEIPNSTVDISCHNNSPAAQVENNCLKKQLQSDSDCSQLVRPSLKISDSGF
IKKKRQFVYTVKSSKPQVQEKEIHSQKIDPSPAQESNVKYLPNAQDKGDCCNIHNKTFDG
KNEMQQLENVTEENLPPSVQAKVQDVEMSQLCIAFAQDFTEDTPQNGFSPSACLSALKQA
KHKARQASLQHDCDGVRRHLSATNQNNSINEKTICDSGFQSAVADSTHMTAFSALPTSEK
EGQTQQWTTPFQPTTKGNRKVHSEDILHGAETDASLSFVVKENQTLDLGRESKPQTKITL
TLPPSSGKGAVDNVNCIPVIGQVHGSLPEKTIVSLPSVHASGFKTASNKGIRISSANLER
AKRLFEESERERLSDQPTKCGHDTKDETHGSVKTKTFFSNHPLSSSETFRDINCQLTASQ
KADVTELCSLLEEADSQFEFTQLKIATPNQQCQDNATSPQKADKELDPDFLSGIDFDDSF
SSDAEKPVPTTMMPGKMALVSDKTNPDTSKSAEMPFSGGMKKENFSSGNVPSFSKNIAEG
SSFIMSSENLDRAEQDDKSMPNNKNPLTLGVGFKTAGGNVLRVSKKCLSKARALFADLEE
NLVTDNNPPDKQNCEKYSKAEHKDSVDNNFLPHKKDNSKLTSYRNDTMEKSCFSSMESVC
SDIQVSDMRDDVSKGFEANKMDTAACQSGFQMVSGKGISISTKAMQKANALFKDCDDVDS
SGSTLVKHKNSIETLPRSFSDEKNLSKCESLNGIKVNFSEEPVKRHTELENVNSEPSVHL
TEVLQHNMEIDKSSFHGNQSSTAKTPSPLCTTPNNIGSSATDDLSVGGFCTASGKKVSVS
VNAMTKAKCLLNEIQTHKDTGQQMKQKENSSRTGRFTNQPSGFKTAGGKGVVISSAALKK
AKSLIDEYDGVEDEVSGNQNYSKIPVHDSPPRGSGFLAASGKPVAFSSEALQRAKALFDD
ISSSSEIPAVSVRKNDKKQENAQNKEKLHCGFSTAGGTIICVSQQHLLKAKNLLKEFDDD
DSMSVKAMQETDASFKDCDVKESNDDMSVKQKSSESVKKKNIFPTFKNVPGVTVNVSEEP
VSGYTKFENVKAGPDVHHEKMLHYDDVEIHKGVFKNTLALSDAPFLHANSYLMAKPLYLP
PCTIAKKLGSSAVDELSNDGGFCTASGKKVSVSDDAMVKAKSLLNESATFEDTNRQLKQK
EGTPQNVGFQTASGKGVAISSAALMRAKSLLSECDDDADKTSARPPHFKMPFPGPPPKNS
GFLAASGKPVAFSSEALQRAKALFDDISSSSEIPVVSETRKNDNKQENTQNIEKLHCGFS
TARGAIVRVSQLNLLKVKNLLKEFDDDSISVKAMQETDAFFKDCDVEDSLNTDIPAVSDT
LKSEKKPEDAQNNEEKTHCGFTTAGRTKVQVSQKYLSKAKKLLREFDTDSVQVKDGLECP
DSNSYSTVLIDTHNPGLSKDVKRTSNYILSTTCNKNILAEKSAPQIVKSHLSYRATDSEN
KILQNSSVRGCNFIKEKAVTDTFKFKEDKFVISGVLNPRGETRPDMMGYEIKQTSSSKKL
EFKRTEGSSVLNFQSLNLSGCTEAQQKFLAQEALDCTKALLEDEGLAGQSLSMTFENMPQ
QDNPKSSNECVEEQKTTGKRLAKDTNMTGQPPPKRRLLDEFDRTVSSPRGSTLQPEKSCP
TGVMKDRRVFKYSVSLHPNITRPNRDGKNDMVTSLQQATPHSSPGDRKSTHSKIPAFVPP
FLKNSKMETHKNNMVKDNIRTPVFVPPFKKQRTIVQESSKPHEEEEKHHSVSVMPSNSNT
FVPPTKKTSRQSTTDVTGNKSTEVTHTVALADNTKDDLVENRKSPVGYRTEDSAAEASGV
ADTLSRSQEIQTLQNIELARDMQDMRIRKKKRQTIRPLPGSLFLTKTSGVSKIPLKDVVN
GKPPTKYTQKQLYGYGVHQHVSEITSENAQSFRFSIQQFLKREAFIDEGGVQLADGGWLI
PSKNGTAGKEEFYRALCDTPGVDPKLISEEWVYNHYRWIVWKQASMERSFPGTMGSLCLN
PEQVLLQLKYRYDVEVDHSRRPALRKIMEKDDTAAKTMVLCVCGVISRGHYPTRQSHNDA
KTPHSADAKAENPCAVVWLTDGWYTIKAPLDDPLTAMLHKGRLAVGGKLIIHGAQLVGSQ
DACSPLEAPESLMLKICANSSRPARWDTKLGFFRDPRPFLLPLSYLYSNGGPVGCVDIVI
LRSYPIQWMERKPDGGIVFRSVRAEEKEARRYNSQKQKAMEIVFAKIQVEFEKEEKGNNK
PQRRRRTISRHDIASLQDGEELYEAVRDDPAYLEAHLSEQQLETLHTYRRSLIEKKQAEL
QDRYRRALENSEENEGTCPKRDVTPVWRLCIADSTNQSSSVYQLNMWRPSSDLQSFLKEG
CRYKVYNLTTSDGKKRSGIETVQFTGNKKTQFQDIQASEEWLSTHFQPRVSANFVDLQNP
EFQPLCGEVDLTGYVISITDGQGSSPAFYLVDGKLNFVRVRCFSSLAQSGVEDVVKPREL
LALSNLQLRGQSTSPTPVVYAGDLTVFSTNPKETHLQESLCQLRNLVQGQKNFFLTAEEK
LSHLIRSVGMSSISSPALQPRTPAVLQQTTTDKIQNTKTSPIRSLGSFTPVSRNPPLGNG
STEKDPKSLKRRRALDHLSRIPSPPPVLNLSSVASPCVNKTFNPPRRSGTPSTLKTVQTP
APKPVVLPVEDEWVNDEELAMIDTQALHVGT
NT seq
9276 nt
NT seq
+upstream
nt +downstream
nt
atggatttaccatcagaaagcatgtacgacacattcaaagacgacatctggggagagctg
ggaccactggaccatgactggtttgatgtactgacagctcaggcagtcaaatctgaggga
aatttctctgatcaagatgacttgtgtgcattcaaagagggaaactttaaaacacccttt
gatgaaactgctgtggagagtcagttgttttcaacccctaaagttttcagacacagacga
gttgtgtcacctgaagccaaggatgagcagtctttcactgctgaaccagaaaaagaaaca
ctgccatggacaagaagtccatatattcagatttcaaaggagggggtgccaggttcaaaa
tatgaaggtgtccatcctcaggctgaggaaagttttgatctgcttcagacaccacacaaa
tccccagtcagctatgcaaagcatatatctgaaagtcttggtgcacaaattcattccgat
atatcatggaccagttctctgaataccccatcagcagtgccttccaccctgattttgtct
aaaactgatgagagtccctgcccagttaatctttttgaggaccaaagtgttgtttttgta
cggaagcttttcccctcactttcaaatgcatccagagttggaactgtgtcaccaaaacac
agtgaccttatgcctcccatgattcaagaaggtgctgaatctcctgaggctggtcagaac
ccagagcctcacaactctccttctcacagttcacatatccagagtgatgtctggaaacag
aagctaccagatgctattgaggatggagaaatttgcagcactgtagcaaatgtttttgat
ggagctgaaaatgttctttcagtatttttctccaacagcagttcagcacttagaaaagtg
aaaactgacagaataaaaaggaagcaaatcatttcagcaaaagaacctggctgcagctcc
acacacatctccacaaagaacacggctgcgtccagtggacaaagaacacctgatcggcag
ccatgcagagctcctttatccccacacttgaaaagtccagtgaaaactggagacatagga
accactcagtggtctccattgagtttatctgaaataccaaactctactgtggatatttct
tgccataataatagtcctgctgcacaagtggaaaacaactgtttaaaaaaacaactacag
agtgactctgattgtagccagcttgtcagaccatccttgaaaatctcagattctggattt
atcaagaaaaagagacaatttgtttacactgtgaaatcttcaaaaccccaagtgcaagaa
aaggaaattcattctcagaagattgacccatcaccagcgcaagaatcgaatgttaagtat
ctgccaaatgcccaagataaaggggactgttgcaacatccacaataaaacctttgatggg
aagaatgagatgcaacaactggaaaatgtcactgaagaaaatctgcctccctctgtacaa
gcaaaagtccaggatgtcgaaatgtcgcagctttgcatagcttttgcacaagacttcaca
gaggatactcctcaaaatggtttctctccatcagcttgtctgtcagccttgaaacaagct
aagcacaaagcaaggcaagcaagccttcaacatgactgtgatggcgtcagaagacatctt
tctgccactaaccaaaataactccatcaatgagaaaacaatatgtgacagtggattccag
tctgctgtggctgatagcactcatatgactgcattttctgctctccccacctcagagaaa
gagggtcaaactcaacagtggaccactccttttcagcctacaactaaaggaaaccggaaa
gtacattcagaggatattttacatggagctgaaactgacgccagcctgtcttttgtagta
aaggaaaaccagacattggaccttggcagagagagcaagcctcaaacaaaaatcacatta
acacttccacccagcagtggaaaaggagcagtcgataatgttaattgcattccagtcatt
ggtcaagttcatggcagcctgccagagaaaacaattgtttctctcccgtctgtccatgca
tcaggattcaaaacagcctcaaataagggtataagaatatcctcagccaacctggagaga
gccaaacgtctctttgaagagagtgaacgtgaaaggcttagtgatcagcccaccaaatgt
ggtcatgacactaaagatgaaactcatggatctgtgaaaacaaaaacttttttctcaaac
catccactttcatcaagtgaaacattcagggacatcaattgccaattaacagcttcacaa
aaagctgacgtgacagaactgtgcagtctattggaagaagcagatagccagtttgaattc
acacagttaaaaattgcaacgccaaatcaacaatgtcaagataatgccacctctccccaa
aaagctgacaaagaacttgaccctgattttctttcaggcatagattttgatgatagtttt
agttcagatgctgaaaagcctgtgccaacaacaatgatgcctggaaaaatggccttagtt
tcagacaaaacaaatcctgacacaagtaagtcagcagaaatgccattctcaggtggaatg
aagaaagaaaacttctcttctggaaatgtaccttccttttctaagaacatcgctgaaggt
agtagttttattatgtcaagtgaaaatcttgacagagctgaacaagatgacaaaagcatg
ccaaacaacaaaaatcctttgacacttggtgtgggatttaaaactgcaggaggaaatgtt
ttgagggtttcaaaaaagtgtctgagcaaagctagagctttgtttgcagatttagaggag
aatcttgttacagataacaatccaccagacaagcaaaattgtgaaaaatatagcaaagca
gaacacaaggacagtgtggataataactttttacctcataaaaaggataattcgaagctc
accagttacaggaatgatactatggagaagagctgcttttccagcatggagtcagtctgt
tcagacattcaggtctcagacatgagagatgatgtttcaaaaggttttgaagccaacaaa
atggacacagccgcatgtcaaagcgggttccagatggtcagtgggaaaggcatttctatt
tcaacaaaagcaatgcaaaaggcaaatgctctcttcaaagactgtgatgatgtggatagt
agtggtagcactttggtaaaacataagaatagtatagaaaccttgcctcgaagtttcagc
gatgagaaaaacctttcaaaatgtgaaagtcttaatgggatcaaagtaaacttttctgaa
gaacctgtcaaaagacacacagagttagaaaatgtaaattctgaaccatctgtacacctt
actgaggttctacagcataatatggagattgacaagtcttcttttcatggaaaccagtct
tcaactgcaaagacgccttctcccttgtgcacaacaccaaataatattggctcctctgcc
accgatgatttgagcgttggtggtttctgtacagccagcgggaagaaagtatctgtatca
gttaacgcaatgacaaaagcgaagtgtcttttgaatgaaattcagacacacaaagacaca
ggccagcaaatgaaacaaaaagaaaactcttcaagaaccggtcgtttcaccaatcagcca
agtggctttaagactgctggtggaaaaggagttgttatttcatctgcagctcttaagaaa
gcaaaatctttgattgatgagtacgatggagttgaggatgaagtcagtggaaatcaaaat
tattctaagattccagtccatgattcaccacccagaggtagtggatttcttgcagccagt
ggtaagccagtagcattttcatctgaggccctccagagggctaaagctctctttgatgac
atcagttccagttcagagatcccagctgtttcagttaggaagaatgataagaaacaagaa
aatgcccaaaacaaagaaaaactacattgtggtttctcaacagcaggaggaacaataatc
tgtgtgtcacagcaacatctgttgaaagcaaaaaatcttttgaaagaatttgatgatgat
gattctatgtcagttaaagcaatgcaagagactgatgcttcctttaaagactgtgatgtt
aaggaaagtaatgatgacatgtcagtaaaacagaaaagtagtgaaagtgtcaagaagaag
aatatcttcccaacatttaaaaatgttccaggggtaacagtaaatgtttctgaggagcct
gtcagtggatacacaaagtttgaaaatgtgaaagctggaccagatgtacaccatgaaaag
atgctccattacgatgatgtggagattcacaaaggtgtttttaagaacacactggctttg
agtgatgcaccttttttacatgcaaactcatatttgatggcaaagccactttacttgcca
ccgtgtacaatagcaaagaagcttggttcctctgctgttgatgaattgagcaatgatggt
ggattctgtacagccagtggaaagaaagtgtcggtgtcagatgatgcaatggtaaaagca
aagtctctgctaaatgaaagtgctacttttgaggacacaaacagacaactgaaacaaaaa
gaaggaacaccacaaaatgttggatttcagacagccagtggcaaaggagtcgccatttca
tcagcagctctaatgagggcaaaatccctgttgagtgaatgtgatgacgatgctgataaa
accagtgcaagaccaccgcatttcaagatgccgtttcctggtccaccacccaaaaatagt
ggatttcttgcagccagtggtaagccagtagcattttcatctgaggccctccagagggca
aaagctctctttgatgacatcagttccagttcagagatcccagttgtttcagaaacaagg
aagaatgataacaagcaagaaaatactcaaaatatagaaaaactacattgtggtttctca
acagcaaggggagcaatagtccgtgtgtcacagctaaatctgttgaaagtaaaaaatctt
ttgaaagaatttgatgatgattctatctcagttaaagcaatgcaggagaccgatgccttc
ttcaaagactgtgatgttgaggacagtttgaacacagacatcccagctgtttcagacaca
ttgaaaagtgagaagaaaccagaagatgctcaaaataatgaggaaaaaacacattgtggc
ttcacaactgcaggaagaacaaaagtccaagtgtcacagaaatatctttcgaaagcaaag
aagcttttgagagaatttgatactgattctgttcaagtaaaagatggtttggagtgtcct
gattcaaactcatactcaacagtcctaattgacactcacaatccaggtctatcaaaagat
gtgaaaagaacctcaaattacattctttcaacaacctgtaacaagaacattcttgctgag
aaaagtgccccccagattgttaaatctcacctttcttaccgagcgactgacagtgaaaat
aaaatccttcaaaattcaagtgtacgtggttgtaactttatcaaagagaaggcagttaca
gatacgtttaagtttaaagaggacaaatttgttatctctggggtgcttaatccccgcgga
gagactaggccagacatgatgggctacgaaataaagcagacaagcagcagtaagaagctg
gagttcaaaaggacagaagggtcttcagttctaaactttcagtcactcaacctcagtggc
tgcacagaagcccagcagaagtttcttgcccaggaagctttggactgcactaaagctttg
ttagaagacgaaggtctagctggccaaagtctctcaatgacttttgaaaatatgccacag
caagataacccaaaatccagcaacgaatgtgtagaggagcagaaaacaacagggaagaga
ttggcaaaggatactaatatgactggtcagcctcccccgaaaagacgattactagatgaa
ttcgacagaactgttagtagtccaagaggatcaacacttcagccagaaaaaagctgtcca
actggtgtaatgaaagacaggagagttttcaagtacagcgtctctcttcatccaaacatc
acaaggccaaacagggatggaaaaaacgacatggtaaccagtttgcagcaggcaacacca
cactcatccccaggtgacagaaaatccactcattccaagataccagcatttgttcctcca
ttcttgaagaattcaaagatggagactcacaagaataacatggtcaaggacaacataaga
acacctgtgtttgttcctccgttcaaaaaacaaagaactattgtccaagagagctctaaa
ccacacgaggaggaggagaaacaccacagtgtctctgtaatgccctcaaacagcaacact
tttgtaccacccactaaaaagacaagcagacaaagcactacagatgtaactggtaataaa
agcacagaagttactcatacagtggccttggctgataacacaaaggatgatcttgtggaa
aatcgtaaaagtcctgttggctatagaacagaggattctgctgcagaggcttcaggtgtg
gcggacacattatccagaagtcaagaaattcagactcttcagaacatagagctggcacga
gatatgcaagacatgaggatcaggaagaagaagcgccagactatccgacctctgccaggg
agcctatttctaaccaaaacttcaggagtgtcaaagatcccactaaaagatgtggtgaat
ggaaagccccctacaaaatacacccaaaaacagctgtacggatatggagtgcatcagcat
gtgtctgagatcaccagtgagaatgcacagtcgtttcgcttcagtatacagcagttcctc
aaacgggaagcattcatagatgaaggtggtgttcagcttgctgatggcggatggctgatc
ccaagcaagaacgggactgcagggaaagaagagttctatagagctttatgtgacacccca
ggtgtggatcctaaactgatcagtgaggagtgggtgtataatcactacaggtggattgtg
tggaagcaggcctccatggaaagatcctttccaggaacaatgggcagcctctgtctcaac
ccagagcaagttctcctacaactcaaatacagatatgatgttgaggtggaccacagtcgc
aggccagctctgagaaagatcatggaaaaggacgacacagctgcaaaaaccatggttctc
tgtgtttgcggggtcatctctaggggtcactacccaaccagacaaagtcacaatgatgcc
aagactccacacagtgctgatgcaaaggctgaaaatccatgtgcagttgtttggctgaca
gatggatggtacaccattaaagccccactggatgatcccttgactgccatgcttcacaaa
ggtcgactggctgttggtggaaagctgatcattcatggggctcagctggtgggatcccaa
gatgcttgctcccctctagaggcacccgaatctctcatgttaaagatttgtgccaatagc
agcagaccagcacgatgggatactaagcttggatttttcagggatccacggccgttcctg
ctgcctctctcctatttgtacagcaatggagggcctgttggatgtgtggatattgtcata
ctgagaagctaccccatacaatggatggagaggaaaccagatggtggcattgtgttccgt
tctgtccgtgcagaagagaaggaggcgagacgctacaacagccagaagcaaaaggctatg
gagattgtttttgcaaagattcaagtagaatttgagaaggaagaaaaaggtaataacaaa
cctcaacgcagaagacggacaatcagtcgtcacgatattgcaagtctgcaagatggagaa
gagctgtatgaagcagtgagggatgatccagcttaccttgaggctcatttgagtgaacaa
cagttggagactctacacacctacagacgctctctgattgagaagaagcaggctgaactg
caggaccggtaccgtcgtgctctagaaaattcagaggaaaatgaggggacctgtcccaaa
cgtgacgttactcctgtttggagactctgcattgctgactctacgaatcaaagcagcagc
gtttaccagctgaacatgtggcgaccgtcttcagaccttcagtcttttttaaaggaaggc
tgtcgatacaaagtctataacctcaccacttcagatggaaaaaagcgcagtggtattgaa
actgttcagttcaccgggaacaagaaaacacagtttcaggacatacaggcttcagaggaa
tggttatcaacacactttcaaccaagggtgtctgcaaattttgtggatctccaaaaccca
gaattccagccactctgtggcgaggttgacctcacaggatatgtcatcagtatcactgat
ggtcaaggttcctctcctgcattttatctggtcgatgggaaactgaacttcgttagagtg
cgttgtttcagcagcttggctcagtctggtgtggaagatgtggtgaaaccacgtgagctg
ttagctcttagcaaccttcagctgagaggtcagtctacatctcccactcctgttgtgtat
gctggagatctcaccgtcttctcaacaaaccccaaggaaacacatctacaggaatccctc
tgtcaactaagaaacctggtccagggtcagaagaacttctttcttactgctgaggagaag
ctttcacatttaatcagatctgttggcatgagctccatctcctctccagctctgcaacca
aggaccccagcagtactgcagcagactacaacagacaaaatacaaaacacaaagacaagt
ccaatccgaagccttggatccttcacacctgtgagcaggaaccctcctctgggaaacggt
tcaacagagaaagacccgaaaagcctgaagaggaggagagctctggaccatctgtctcgt
atcccatcaccaccacctgtgctcaatctgagctcagtggcttcaccatgtgtaaataag
acattcaatccccctcggaggtctgggacacctagcactttaaaaactgtacagactcca
gctcccaaacctgttgttttgccggtggaggatgaatgggtgaacgatgaggagctggct
atgattgatactcaggcattacatgttggtacatag
DBGET
integrated database retrieval system
