Scomber scombrus (Atlantic mackerel): 133981017
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Entry
133981017 CDS
T10651
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04517
IgSF CAM signaling
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133981017
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133981017
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133981017
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
133981017
Intermediate filaments
Intermediate filament-binding proteins
133981017
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
Helical_needle
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
133981017
NCBI-ProteinID:
XP_062275888
LinkDB
All DBs
Position
5:24118858..24194659
Genome browser
AA seq
2703 aa
AA seq
DB search
MANASPDLDNVEAQRQLNNNNRPISSGFWETECTSSKLFECSRIKALADERDAVQKKTFT
KWVNSHLARVSCRISDLYNDLRDGYMLTRLLEVLSGELLPRPTRGRMRIHCLENVDKALQ
FLKEQRVHLENVGSHDIVDGNHRLTLGLMWTIILRFQIQVIKIETEDNRETRSAKDALLL
WCQMKTAGYPEVNIQNFTTCWRDGLAFNALIHRHRPDLIEFNKLTRSNATHNLQQAFNIA
EQHLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALIVEGKRVGKVLDNCIEAE
KIINRYEALASDLLDWIEKTIAVISNQKFANSLAGVQQQLQAFTTYCTIEKPIKFQEKGN
LEVLLFTIQSKLRANNQKPYVPHDGKLISDINKAWERLEKAEHERGVALRKELIRQEKLE
LLAQRFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADIASYEERIGVV
VELAAEMEVEGYYDIRRILARKENILGQWGLLKELVAGRRTRLEKNLALQKTFQDMVYMI
DWMEDTQVQLLSKDFGKHLLEVDDLLQKHSLQEADIGVQAERVETLNTAALKFTTIEGYQ
PCDPQVICNRVNHVSSCLEELKQLAAKRRAELEESRQLWAFFQELEESEAWIREKSSILG
AQGYGKDLSSVLGLLQKHKTLAGELLAHRSLLQNTMKRGKQILSEKSFGTAGIQERIMDV
KGEWKRLEDQAAQRLGHLQEALNFFQFSTETDDLVAWLQDAYRLVSSEDFGHDEYSTQTL
LKKHRGVSEAIDKHRLHVVTLRKHMVALPLRYRDQEEVQVRMGEVEQLYTEVAEVAVLRQ
QWLHDALAVYRMFSEVNACELWIDEKEQWLDKMEIPERLEDVEVVAHRFESLDQEMNSLM
GRILDVNQIVQQLLDGGHPSSTEVRGCQDHLNSRWNSIVELVEQKKDQLDSMLRLQNYLL
ECAEIKSQIQDKRKAIDATQYVGSDLGGVLALQRRLSTMEGALSVLEPKLLHLQEEAEHM
ATAHPARAMEVLVPFDGISVEWEELKRTLQGCEDSLMVASRLQSFIQDLDSFLTWLVQTQ
TAAASDQLPNDLEEAEKLINKHAALKEEIGRYEEDYERLQAMNELLESEEAPLPQAALQQ
WLQKLDVGWNKLLEMWESRREVLVQAHIFHLFLRDVKQAESFLNNQESALAHVELPTTVE
TVEAAIKKHKDFTTTMELNLHRIKAVIEAGESLISQSNIYSDRIRERIDTLANRGNQNRE
LAQQWLEKLNDQWELQRFLQDCHELGDWVYEKMLMARDSSRDETQKLHKKWLKHQAFMAE
LAQNKEWLDKIEREGQQLIQEKPELSPVVRRKLEEIRECWQDLESTTQAKARQLFEANRA
DLLVQSYDSLDQRLGQLEGQLAYVDQGQDLTSVNRQLKKLQTMECQMEEWYKEVGQLQVQ
AASIPQQTQVKETVVGQQAAVEARMVRLIEPLKERRRILLASKEVHQVGRDLEDEILWVQ
ERLPMAMSQEHGSSLQAVQQLMKKNQTLQRELQGHRSRIDDVLERAGIITSIRSPEADCV
RAGHDQLAGLWALLWTETERRQLVLDAMYQAQQYYFDTAEVEAWLSEQELHMMNEEKGKD
EPSTLQLLKKHLILEQTIEDYAETIGLLSQQCRQLLEMGHPDCEQISKRQSQIDRLYVSL
KDLVEERKSRLEQQYWLYQLNREVDELEQWIAQREVVASSPELGQDYEHVTVLQEKFTEF
ASETGSVGQERVTAVNQMVDELIDYGHSEAATIAEWKDGVNEAWADLMELMETRAQMLAA
SHQLHKFFSDCREVLTQIEDKHRRLPEVQDRQGSTANTSTLQRLLHSFEQDIQLLVTQVR
QLQESAAQLRTVYAGEKAEAIACREHEVMQYWKELLTSCEECRVQITTETDKLRFFSLVR
DQIMWMESIICQIGTGEKPRDVSSVEVLMNYHHSLKSEVEARSQSTMECIEMGKTLLAAR
NPAAEEIKEKLDKVMVKQHELSEKWDRQWEFLQQLLEVHQFAQDAVVAEAWLTAQEPFIN
SNELGASVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTTVEKLKAEQSKLPPTPLLGRK
VFLDPQDASASPSTLPRIPLSPVMRQTIYEQNEASSPPSPSPATPTPSPSSVARRLGSTV
TNYTPVMNGSSYRQTLEARHGSVVGVAAGLGQPAPSSIASIATAAMLVSANQAREITSAV
RDQTVKVMSHLQPVQAARELEVKSSPYLRQPKIKHLDDAVTPLLVASRLEKARERGRERE
MMMGEIGTERAEVAVMAEVVLQEPSRERLHSEPTRGPRGSRSDPLGHAEPQVHQRDHKME
RQLSSEQLIQARRDELPQEVWREHAERRERRTLERQTSSEQEGHGSHEGRRRERDRHRLD
RQESSEHDTGHSDRRSAGGEKRTTLLEIVEQLQEREAAQARGEVPRLPNGVPEKSSRHER
PRARDRPKPRRRPRPKEAGETTRRSRSAPAQSSPAVPQPPTHTAHHEGFLFRKLDIESLK
KSTNSRSWVNLYCVLNKGEMGFYKDAKNTTTPYNNEPLLNLSHCHCDVTNGYKKKKNVFT
LKTKDGSEFLFHAKDEEDLKTWVSKITASITEHEEIAKWGQPQPTTSSTDEGTRRDGSKA
DNRSERGGERSDRTEKIEPAEKEKEKEREKEKEKERERGERSERSDRGGKSEGKRSEKSS
KKK
NT seq
8112 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgcctccccagacctggacaacgtggaagcccaacgccagctcaacaacaac
aaccgaccaatcagctctgggttctgggagacggagtgtaccagctctaagctgttcgag
tgctcccgcatcaaggccctggcagatgaacgagatgcggtacagaagaagacttttacc
aaatgggttaactctcatttggccagagtgtcctgtcgtatatctgacctctacaacgac
ctgagggatggatacatgctcaccagactgctggaggtcctcagtggagagctactgccg
aggcctacacggggtcgtatgcggatccattgcctcgagaatgtcgacaaagccctccag
ttccttaaggaacagcgggtccacctggaaaatgtcggttcacatgacatcgtcgatgga
aaccaccgcctcactctgggcctcatgtggaccatcatcctacgcttccagattcaggtg
atcaagatagagacagaggacaatagagaaacccgctctgccaaggatgcgctgctgctc
tggtgccagatgaagaccgcagggtaccctgaggttaacatccagaactttaccacctgc
tggagagacggccttgcctttaacgcactcatacacagacacagacctgacctgatagag
ttcaacaagctgacgagatccaacgcaacccacaacctccagcaagccttcaacatcgca
gagcagcacctgggcctcacgaaactcctggaccctgaagatgtgaacacagagaaccca
gatgaaaagtctatcatcacctatgtggtctcctactaccactacttctccaagatgaag
gcgctcattgtggagggcaagagggtcggcaaggtattagacaactgtattgaggccgag
aagatcatcaaccgctacgaggctctagcgtccgacctgctggactggattgagaagacc
atcgcggtcatcagcaaccagaagtttgccaactcactggctggagttcagcagcagcta
caagccttcaccacgtactgcaccatagagaagcccatcaagttccaggagaaggggaat
cttgaagtccttctcttcactatccaaagcaaactgagagccaacaatcagaaaccctat
gtgcctcatgatgggaagctcatctcagacatcaacaaggcctgggagaggctggaaaag
gcggagcacgagagaggcgtggctctgcgcaaagagctgattcgtcaggagaagctggag
ctgctggctcagcgcttcgaccacaaaaccaccatgagacaagcctggctcaacgaaaac
cagagactcgtatcacaggacaattttggctatgacctgccagcagttgaagcagcgatg
aagaaacacgaggccatcgaggcagacatcgcctcgtacgaagagcgaatcggcgttgtg
gtggagcttgccgcagagatggaggtggaaggatactatgacattcggcgtatcttggca
cgtaaggagaacatcctggggcagtggggtctgctcaaagagctggtggccgggaggagg
acacggctggagaagaacctggccctgcagaagacctttcaggacatggtctatatgatc
gactggatggaggacactcaggtccagctgctgtcaaaggactttgggaagcatctgttg
gaggtggacgacttgctgcagaaacacagcctgcaggaagccgatattggcgtgcaggcc
gagagggtcgagaccctcaacactgctgcactcaaattcaccaccatagaaggttaccaa
ccatgtgacccacaggtgatctgtaaccgtgtcaaccacgtctcttcctgtctggaggag
ctgaaacaactggcagcgaaaagacgcgccgagctcgaggagtcgagacaactgtgggct
ttctttcaggagctggaagaatcggaggcctggatcagggagaagagctccatcctggga
gctcagggctacgggaaggacctgagcagtgtgctggggttactgcaaaaacacaagact
ctggctggagaactgctggctcaccggtcactgctgcagaacaccatgaagcgtggaaag
cagatcctcagtgagaaaagcttcggcacggctgggatccaggagcgcatcatggacgtg
aagggtgagtggaaaaggctggaggaccaggccgcgcagcgtctcggtcacctgcaggag
gcgctcaactttttccagttctccacggagacggacgacctagtggcctggctgcaagac
gcttaccgcctggtctccagtgaagatttcggacacgacgagtactccactcagaccctg
ctgaagaaacacagaggggtcagcgaggccatcgacaaacatcgtctgcatgtagtgacg
ctgcgcaaacacatggtggcgctgcctttgcggtaccgtgatcaggaggaggtgcaggtg
cgtatgggagaggtggagcagctgtataccgaggtagctgaggtggcagttctcagacag
cagtggcttcacgacgcccttgccgtctaccgcatgttcagcgaggtcaacgcctgcgag
ctgtggattgatgagaaggagcagtggttggacaagatggagatccctgagaggctggag
gatgtggaggtggtggcacacaggtttgagtccctggaccaggagatgaacagcctgatg
ggaaggatcctggacgttaaccagatagtccagcagctcctggatgggggtcatccatcc
tctacagaggtcagaggttgtcaggaccacctcaactccaggtggaacagcattgtggag
ctggtcgagcagaagaaggatcagctggactccatgttgcgtctgcagaactacctgctg
gagtgtgctgagatcaagtcccagatccaggacaaaagaaaagccatcgacgccactcag
tacgtgggcagcgacctgggaggagtcctggctctgcagagacgtctgtccaccatggag
ggggcactgtctgtcctggagcccaaactgcttcatctgcaggaggaggcggagcacatg
gccaccgcccatccggctcgagccatggaggttctcgtgccgtttgatggcatcagtgtg
gagtgggaggagctgaaacggaccctgcagggctgtgaggactcgctgatggtggctagc
aggctgcagagcttcatacaggacttggactcattcctcacctggttggtccaaacgcag
acagctgccgcctcagaccagctgcccaatgacctggaggaggctgagaaactcatcaac
aaacacgctgccctcaaggaggagataggacggtatgaagaggactatgagcgcctgcag
gccatgaatgaactgctggagtcggaggaggctcctctccctcaggccgccctgcagcag
tggcttcagaagctcgatgtcggttggaacaagctgctggagatgtgggagagcaggaga
gaagttctggtccaggctcacatcttccatctgttcctgagagacgtcaaacaggccgag
tccttcctcaacaaccaggagtcggccctcgctcacgtggagctgcccaccacagtggag
acggtcgaagccgccataaagaaacacaaggacttcaccaccaccatggagctgaacctg
cacagaatcaaagccgtgatcgaggccggagagagtctgatcagccagagcaacatctac
tctgatcgcatcagggaacgcatcgacacccttgccaacaggggaaaccagaacagagag
ctggcccagcagtggctggaaaaactgaatgaccagtgggaacttcagaggtttcttcag
gattgtcacgagctgggggactgggtgtatgaaaagatgctaatggcgagggacagcagc
cgagacgagacccagaagcttcataagaaatggctgaagcaccaggcgttcatggctgag
ttggcccagaataaggaatggctggacaagattgagagggagggccagcagctgatccag
gagaagcccgagctcagtccggtggtgcggaggaagctggaggagatcagggagtgctgg
caggatctggagagcaccactcaggccaaagcgcgacagctcttcgaggccaacagggct
gacctgctggtacagagctacgacagcctggaccagagactgggccaactggagggtcaa
ctggcctacgtagaccagggacaggacctcacctctgtcaacaggcagctcaaaaaacta
cagaccatggagtgccagatggaggagtggtacaaggaggtggggcagctccaggtgcaa
gcggcctccataccgcagcagacgcaggtcaaggagacggttgtcgggcaacaggccgcc
gtggaggccaggatggtgcgtctgatcgagccactgaaggagaggcgacgcatcctgcta
gcgtccaaggaagttcaccaagtcgggcgagacctggaggatgagattttgtgggttcag
gagcgcctcccgatggccatgagtcaggagcatggttcctctctgcaggctgtccagcag
ctcatgaaaaagaaccagacacttcagagggagctgcagggccacaggagccggatcgac
gacgtcctggaaagggcggggattataacctccatacgcagccctgaagccgattgcgtc
agggcaggtcacgaccagctggccggtctgtgggctctgctctggaccgagactgagaga
aggcagctggtactggatgccatgtaccaggcccagcagtactacttcgacacggctgaa
gtggaggcctggctgagcgagcaggagctgcacatgatgaacgaggagaaggggaaggat
gaaccgagcacactgcagctgctgaaaaaacacttgatcctggaacagaccatcgaggac
tatgcagagaccatcggcctgctgtcacagcagtgtcgacagctgctggagatgggacac
ccagactgcgagcagatcagcaagcgtcagtcgcagatcgaccgtctgtatgtgtctctg
aaggacctggtggaggagaggaagagccgcctggagcagcagtactggctctaccagctc
aacagggaggtggacgagctggagcagtggatcgctcagagggaggtggtcgccagctcg
cccgaactgggtcaagactacgagcatgtcactgtcctgcaggagaaattcacagagttt
gcgtcagagacgggcagcgtggggcaggaacgagtgacggccgtcaaccagatggttgat
gagctcatcgactacggacactccgaggccgccaccatcgcagaatggaaggacggggtg
aacgaggcctgggccgacctgatggagctgatggagacccgggcgcagatgctcgctgcc
tcacaccaactacacaagttcttctctgactgcagagaggttttgacccagattgaagac
aaacatcgaaggctgcccgaggttcaggatcggcagggcagcactgccaacaccagcacc
ctgcagagactcctgcacagctttgagcaggacatacagctgctggtcacacaggtgcgt
cagctgcaggagagtgcggcccagctgaggacggtgtacgccggcgagaaggcggaagcc
atcgcctgccgcgagcacgaggtgatgcagtactggaaggagctgctgacgtcctgcgag
gagtgtcgggtgcagatcaccacagagacggacaagctgaggttcttcagcttggtccga
gatcagatcatgtggatggaatcgatcatctgtcagatagggacaggagagaagcccaga
gacgtgtcttcagtagaagtgctgatgaactatcaccatagtctaaagagcgaagtggag
gctcgcagccagagcaccatggagtgtatcgagatgggcaagacgctgctggctgctaga
aaccctgcagctgaagagatcaaggagaagctggacaaggtgatggttaaacaacatgag
ctgtctgagaagtgggacaggcaatgggaattcctacagcaattgttggaagttcaccag
tttgctcaggacgcggtggtggcggaggcgtggctgacagcgcaggaaccgttcattaac
agcaacgagctcggagcgagtgtagacgaggtcgagcagctgattcgtcgacatgaagct
ttccgcaaagctgccgccacctgggaggagcgattcagctcactgcgacgactcaccacg
gtagaaaagttgaaagcagagcaaagtaaacttcccccaacccccctgctggggcgtaaa
gtcttcctggacccccaagatgcctcagcctctccctccaccctcccccgtatccctctc
tcccccgtcatgagacagaccatctacgagcaaaacgaagccagctctcctccctcacca
tcacctgccaccccgacaccctcgccttcatccgtggctcgccggctgggctcgacggtg
accaactacacccctgtgatgaacggatctagttaccgccagaccctggaggcacggcat
ggcagcgtggtgggcgtggctgcgggactcggccagcccgctccctcctcgattgcctcg
atcgccacggcagccatgctcgtctcggccaaccaggcgcgagaaatcaccagcgcagtg
agagaccagacagtgaaggtgatgagtcacctacagccagtgcaggcggcgagggaactg
gaggtgaaatcgtccccatatctacggcaacccaaaatcaaacacctggacgacgcagtg
acgcctctgctcgtggcgagccggctggagaaagcgagggagagagggagggagagagag
atgatgatgggagagatagggacagagagagcggaggtggctgtgatggctgaggtggtg
ctccaggagccaagccgcgagagactacacagtgagcccaccagagggccccgggggtcc
aggtctgacccattgggccacgctgagccccaagtccaccagagggaccacaagatggaa
cggcagctgtccagcgagcagctgatccaggcgcgcagggacgagctgcctcaggaggtg
tggagggaacatgcggagaggcgggagagacggacgctggagaggcaaacgtccagcgag
caggagggccacgggagccatgaggggcggcggagagagagggaccgacaccggctggac
agacaggaatccagcgaacacgacaccggacactcggacagacgctcagcaggaggagag
aaaagaaccaccttattagaaattgttgagcagctgcaagaaagagaagctgcacaggcc
cgtggcgaagtgccccgcctgcctaacggggtaccagagaagtcttcccgccacgaacgg
cctcgagctcgggacagacccaaaccacggcgccgaccacgccccaaagaggcgggggag
acgacgcggcggtccaggtccgccccggcccagagcagcccggcggtcccccagccacca
acacacactgcacatcacgagggcttccttttccgaaagctagacatcgagagcctgaag
aagagcaccaatagcaggtcatgggtcaacctgtactgcgtgctgaacaaaggggagatg
ggtttctacaaggatgccaagaacaccaccacaccctacaacaatgagccgctgctcaac
ctctcccactgccactgcgacgtcaccaacggctacaagaagaagaagaacgtcttcacg
cttaaaacgaaggacggcagcgagtttttgtttcatgcaaaagatgaggaggacctcaaa
acgtgggtgtccaaaatcaccgccagtattacggagcacgaggagattgccaaatggggt
caaccccaaccaactacctcatccactgacgagggcacgcggcgcgacggcagcaaagcg
gacaacagatcggaacgaggcggcgagcgctcggaccgcaccgagaagatcgagccggcc
gagaaagaaaaggagaaagaacgcgagaaagagaaggagaaggagagagagagaggagaa
cggtcggagaggtcagatcggggcgggaaatcggaagggaagcgctcggagaagtccagt
aagaaaaagtga
DBGET
integrated database retrieval system
