Scomber scombrus (Atlantic mackerel): 133981050
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Entry
133981050 CDS
T10651
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1-like
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
133981050
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133981050
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133981050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_5
Ank_3
Ank_4
Motif
Other DBs
NCBI-GeneID:
133981050
NCBI-ProteinID:
XP_062275922
LinkDB
All DBs
Position
5:complement(31505128..31518037)
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AA seq
710 aa
AA seq
DB search
MHTSPTVGSVYSKEFTRERIFEAASHGDTTQLNGLADYLKANNKRLTSPELRDERNGKTA
LLKALLNLKDGKNDTIEVFLDIAEKTGDLEYLINAAYIDPCYKGQTALHIAIERRSFDHV
KLLVQKGADVQAKADGKFFQRKAGLGFYFGELPLSLAACTNQPNIVSFLMDNPHRKADPT
DKDSQGNTVLHTLAVIADNTTENTDMIVRMYDDILIQHHKLEKISKVQLEAIENNKGLTP
LKLAAKLGKIGLFRHILHREFTDEETKPLSRKFTEWSYGPVHSSLYDISSIDTKKDNSVL
EIIVFGSEIPNRPEMLQIEPLRSLLKDKWDRFASKLFLVNFLVYLMYLIIFTSVAFYRKE
GQPPFPVDDAPLDYVRCIGEVISVLGAVWFFYKAITIFRKNPPNFKALYIDGFCDIIFFV
QAALLLIGAILYFCGRKEYVGLLVISLALAWINVLYYSRGFKQMGMYNVMMQRMILGDIL
HFLCFYSVFLFGFSAAIVALIDDSSPAFKKQANATQARVMTFDMETFKCKRPTYNDIRFT
TLELFKFTIGMGDLEFTDHVQYKEVFYILLISYIVLTYILLLNMLIALMGNTVERISEES
ENIWNLRRAMTILDLERSLPRSLMRKLNPAVSKMLCVRNEKNECKRFFRVEEMNWRQWRS
DVALNREEDPGNDMMTSQPDDQNKGNGWNLNPLFEKIRGRRTLQRQAPIP
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccagtcccaccgttggcagcgtttacagtaaagaattcaccagggaaagaata
tttgaagcagcgtcgcacggagacacaactcaacttaatggactggctgattatctgaaa
gctaacaataagcgacttaccagccctgaactccgagatgaaagaaatgggaaaacagct
cttctgaaagctttgctgaacctgaaagatggcaaaaacgacaccattgaagtcttcctc
gacattgcggagaaaactggagatttagaatatttaatcaacgctgcttacatcgatccg
tgctacaaaggtcagacagccttgcacatcgccattgaacggaggagcttcgaccatgtg
aaacttctggtccagaaaggagcagatgtgcaagccaaagctgatgggaagttcttccag
cgtaaagccggactggggttttatttcggagagcttcctctgtcattggctgcctgcacc
aaccagcccaatatcgtgtccttcctcatggacaaccctcacagaaaagctgacccgact
gacaaagactcccaagggaacacagtcttgcacaccttggcggtcatagctgacaacaca
acagagaacacagatatgattgtaaggatgtacgatgacatacttattcagcaccacaaa
ctggagaagatcagcaaagtccagttggaagccattgaaaataataaggggttgactcct
ctgaagttagcagccaagctagggaagattgggctgttcaggcacattttgcatcgggaa
ttcacggatgaggagacgaagccgctgtccagaaagttcacagagtggtcctatggaccc
gtccactcctcactttacgacatcagctccatcgacaccaaaaaagacaactctgtgttg
gagataatcgtctttggaagtgaaattccgaatcgccctgagatgctccagatcgagccg
ctccgcagccttctcaaggataagtgggacagatttgcttccaaattattcttggtgaat
ttcttggtttacctgatgtacctgatcatcttcacctccgtggccttctacagaaaggaa
ggccagccgccgtttcctgttgacgatgctcctctcgactacgtgcgctgcatcggtgag
gtcatcagtgtcctcggagctgtgtggtttttctataaagcgataactattttcagaaag
aatcccccgaacttcaaagctctgtacatcgatggattctgtgacattattttcttcgtg
caggccgctcttcttctaatcggcgctattctgtatttctgcgggcggaaagaatacgtg
ggacttctcgtgatctcgctggctctcgcttggatcaacgtcctctactactccagaggc
ttcaaacaaatggggatgtacaacgtcatgatgcaaagaatgatcctgggtgacatctta
cacttcctgtgcttctacagcgtcttcctgtttggattttctgctgctatcgtcgctctt
atcgacgactcgtctccagcttttaaaaaacaggccaacgctacgcaagcacgtgttatg
acatttgacatggagacgtttaagtgcaagaggccgacgtacaacgatattcgttttaca
acactggagttgttcaagttcaccattgggatgggagacctggagtttaccgaccacgtc
cagtacaaagaggttttctacatcctcctcatctcgtacatagtcctgacttacatcctg
ctgctcaacatgctcatagcgctgatgggaaacacggtcgaaagaatctcagaagaaagc
gaaaacatctggaatctgcggagggcgatgactattctggacctggagaggagtctgccg
aggagcctgatgaggaagctgaaccctgcagtgtccaagatgttgtgtgtgagaaacgag
aagaacgagtgtaaaaggttcttcagggtggaggaaatgaactggagacagtggcggtca
gacgtcgctctaaatcgtgaagaagatcctggaaatgacatgatgacatcacagcccgac
gaccagaacaaagggaacgggtggaatttaaatccactatttgagaagattcgtggaaga
agaacgctgcaacggcaagcacctattccctaa
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