Scomber scombrus (Atlantic mackerel): 133981122
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Entry
133981122 CDS
T10651
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04382
Cornified envelope formation
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133981122 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133981122 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133981122 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133981122 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133981122 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133981122 (col4a4)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133981122 (col4a4)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133981122 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133981122
NCBI-ProteinID:
XP_062275990
LinkDB
All DBs
Position
5:complement(34481011..34544349)
Genome browser
AA seq
1681 aa
AA seq
DB search
MIQRGEIWRPDVSVSSRLSSESRDGEVMLSQLSVLIGPEPRYGSGDLTEPCGGRDCSTCQ
CFPAKGARGGPGPVGHQGPQGPPGFPGPQGPPGEKGHRGNEGPTGVSGLKGDMGNVGVPG
FPGLEGLPGHPGPAGGPGFPGLDGCNGTRGNTGDSGFPGESGLDGEPGLPGLKGFPGDPA
VYFIQYPGIPGDVGPSGLPGAQGNKGFLGQSGALGPAGLLGSNGFPGVTGSRGRPGEKGR
SLPGQKGDEGEQGLQGPPGPFEYVDPPEDLYIKGEQGPAGLKGLCGIQGFPGLDALPGMK
GEKGIVGFPGSRGFCGRPGPPGEKGDKGTLGSPGLPGLIGREGLKGMMGDPGPKGLPQDS
VITLTGDVGVPGDPGQSGPLGDMGFMGTHGPPGAPGRSISGPPGVMGQMGVPGSRGDRGE
PGQIFVGEPTPGEPGKPGRPGPRGPKGGPGSPGYYCLPGAPGLSGEPGELGPPGAQGSTG
FKGDCGECRCGPPVPLIGPPGAEGESGSPGFPGVLGTPGLRGERGSPGDPGLSGQQGLGG
FPGVTGFKGQKGDFRVVDIKGEKGNRGEEGPAGRLGFSGRRGSDGSAGAPGTPGPQGDSF
SGPPGDRGFPGLSGPGGASGPSGPPGPAVVGAVGQRGDPGAPGSPGFPGPPGPKGVRGDT
LPCVPRNPGAPGQKGETGNNGYRGLPGPPGFRGNTGPDGPKGDEGHSGRTGPPGRQGPPG
VVGDTGEEGPEGLSYGGEPGSPGLPGFPGLKGPAGVSDVGPSGPMGFPGPLGSQGPKGVP
GPPGNDGLPGVLGLPGGPGPRGQRGHDGAPGVAGPKGRTPISCEKGKPGSRGLFGPQGPI
GPPGFLGQKGDLGEVGPLGFGPKGSTGKPGSPGLPGHPGLQGRAGSTGDSGVPGPDGGKG
LMGPPGREGGPGAPGRTGVPGGPGQRGEQGFSGRDGAAGYQGPKGARGCRGAPGPPGETQ
CIPIKGERGKPGPSGLNGFTGPRGNKGVHGAAGKPGYPGLCGPLGSIGPPGPPGTCGKPG
PPGPAGRLGAPGLIGFPGETGDQGDLGCPGQPGKPGHQGCAGPKGDKGESVGGPGSPGDK
GPRGDSGPSGPAGPRGDPGRPGFIGAPGLKGCKGDPGPHGDTGLPGVLGPPGSRGRPGPA
GVPGEAGADGPAGEQGCLGLKGPPGPLGLHGLDGLKGVKGDMGTRGLGVPGTQGCQGLPG
DKGPPGPPGPSGSSQPGPPGPNGPPGPKGPPGDCGPVGDPGPDCKGPIQGPPGDRGFPGP
DGEPGCPGSTGEPGPNPPIPGDDGDNGGPGWQGPKGEKGSPGATGLPGIAGNLGVKGKRG
STGLMGLPGNRGPGGFRGPAGLPGPKGSAGLVGPKGEKGGVSPCLPYPPAPQGSPGPPGP
PGPPGSDGLPGESGPTGLPGKKGDQGSLGQTGPVGPPGQDGDTGNPGLQGESGVDGAKGD
PGVLGDRGPPGPSRTLNTGFLLVMHSQSKTVPSCPLNMGTLWIGYSLLYLEGQEKAHTQD
LGQAGSCMRVFSTMPFSSCNMGTCSYASRNDKSYWLSTTAAVPSIPVGGASIQEHISRCV
VCEAPSAPVALHSQTSTQPNCPPNWKSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFR
AQPFVECQGPRGTCHYFANIYSFWLTTVDGTASSSDMSSSTLTEGRQQRRNIGRCNVCMR
E
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgatccagagaggggagatctggagaccagatgtctcagtatcatcccggctctccagt
gagtccagagatggagaggtgatgttgtcacagctcagtgtcctgattggacctgaacct
cgctatggcagcggcgacctgacggagccatgtggggggcgggactgctccacctgtcag
tgttttccagccaaaggagcgaggggaggtccaggtcctgtgggacaccagggccctcag
gggcctccagggttccccggccctcaggggcctcccggagagaagggccaccgaggaaac
gagggtccgacaggagtttcaggactgaagggagacatggggaacgtcggcgttccgggc
tttcccgggttagaaggactcccgggtcatccaggtccagccggaggtcccgggtttcca
ggtctggatggatgtaatgggaccagagggaacacaggagattctggatttcctggagaa
tcaggactcgatggagaaccgggtttaccaggactgaagggattccccggagatccagca
gtctacttcatacagtaccctgggatacctggtgacgtcgggcccagcggactacctggt
gcacagggtaataaaggcttcttaggtcagagtggagcgctgggtcctgcaggactgctg
gggtccaacggttttcctggtgttactggttccagaggtcgacctggagaaaaaggtcga
tctctgcccggacagaaaggagatgagggggaacagggccttcaggggcctccggggccg
tttgagtacgtggaccctccagaggacctttacatcaaaggagaacagggtccagcaggc
ctcaaaggtctctgtggcattcagggatttccgggtctggacgctcttccaggaatgaaa
ggagagaaagggattgtgggatttccgggatccaggggattctgtggacgacccggcccg
ccaggggaaaaaggagacaagggaactctgggaagtcctggtcttccaggtctgattgga
cgagaaggtctgaagggcatgatgggagatccgggtcctaaaggcctcccccaggactca
gtcatcaccctcacaggtgacgtcggggtccccggggacccaggacagagcggcccccta
ggagacatgggcttcatgggaacacacggacccccaggggcccctggcaggtccatctcc
ggaccaccaggtgtcatgggtcagatgggagttccaggatccagaggtgaccgaggagaa
ccaggtcaaatatttgtaggtgaacccacacctggagaacctgggaaaccaggacgccca
ggaccccgaggaccaaaaggaggaccagggagtccaggttattattgtcttcccggggcc
ccaggactgtccggagagccaggagaactggggcctcccggggcccaaggttccacaggg
tttaaaggtgactgtggggaatgtcgctgtgggcccccggttccactgatcggacccccc
ggtgctgaaggggaatcgggttccccggggtttcctggagtcttggggactccgggtctg
agaggtgagagaggttcacctggagaccccggactgagcgggcaacagggcctgggcggt
tttccaggtgtcacagggttcaaaggtcagaaaggagattttagagtggtggatattaaa
ggtgagaaaggaaaccgaggtgaggagggtcctgcaggccggctgggcttctcagggagg
agaggatccgacgggtccgctggggcccctggaaccccaggcccccagggcgacagcttc
tccgggcctccaggggaccggggtttcccgggcctgtcggggcccggcggggcatcgggc
ccttcggggcctccaggacctgctgtagttggagcagtgggacagcgcggagacccaggg
gccccgggctctccaggattcccggggcccccagggcccaaaggggttagaggtgacacc
ctgccatgtgtacccaggaatcccggcgctcccggacagaaaggagagacgggaaataac
ggctacagaggacttccgggtcctccaggtttccgtggcaacactggacctgatggacca
aaaggagacgaaggacactctggacgtactggaccaccaggacgacaaggacctccggga
gttgtcggagatacgggagaggaaggacctgaaggcctcagttatggtggagagccaggc
tctccagggctgccgggttttcctggattgaagggaccagctggggtctctgatgttggg
ccttctggacccatgggcttcccggggccactgggttcacagggacctaaaggggtcccg
ggccccccgggcaacgatggattaccaggtgtcctaggcctgcctggagggcccggtccc
aggggccagagaggacatgatggggctccgggagtagctggacccaaaggacgcacaccg
atctcatgtgagaaaggaaaacctggttccagggggctctttggcccccaaggacccatt
ggacccccagggtttctggggcagaagggggacctgggtgaggtgggcccgctgggtttt
ggccccaaaggctctaccggtaaaccgggctctccagggctccctgggcacccgggtctg
cagggccgcgctggctccactggagactctggagtaccaggaccagatggagggaaaggt
ctgatggggcctccgggcagggaaggaggtccaggggccccgggacggaccggggtccct
ggaggtccggggcagagaggggagcaaggcttcagtggacgggacggagctgcaggatac
caagggcctaaaggagcgagaggctgtagaggggccccggggcccccaggagagacccag
tgtatccccatcaaaggcgagagaggaaaaccgggaccctccggcctcaatggcttcacc
ggacctcgaggaaataaaggtgtgcacggtgctgctggtaagccagggtatccgggcctc
tgcgggcccctaggcagcattggacccccaggaccccccgggacctgtggcaagccaggg
cctccaggaccagctggacgtctaggagctccaggacttattggcttccccggcgagacc
ggagatcaaggggacctgggatgccctggtcagcctggtaagcccggtcaccaaggatgt
gctggacccaaaggtgataaaggagagtctgtgggtggtcctggttcacctggagacaag
gggcctcgtggagactctggaccctcaggcccagctggacctcggggggatccaggacgc
ccgggtttcattggggctccgggcctgaaaggatgcaaaggagatccgggcccccatgga
gacacaggactaccaggtgtgctgggccctccaggttccagaggtcgaccaggtcctgca
ggtgtccctggtgaggccggtgctgacggtcctgcaggtgaacagggctgcctgggactg
aaaggtcctcctggaccgctgggacttcatggactggatggactgaaaggagtgaaagga
gacatggggaccagaggtctcggtgttccaggtactcaagggtgccaaggtcttccaggg
gataagggacctccaggccctccaggccccagtggttcatcccagcctgggcctccagga
cctaatggccccccaggacccaaaggaccaccgggtgattgtggacctgtaggtgatcca
ggcccagactgtaaaggcccgatccaagggcctcctggagatcgtggtttccctggacca
gatggagagccagggtgccctggtagcaccggagagccaggtccaaatcctcccataccc
ggagatgatggggacaatgggggcccagggtggcaagggccaaagggagaaaaggggtct
ccaggggccacaggactaccaggcatagctggaaatctaggggtgaaaggtaagcggggc
tctacaggcctgatgggactccctgggaatcggggtcctggaggttttcgcggtcctgct
ggacttccaggaccgaagggatctgctggactagttggtcccaagggggagaaaggcgga
gtctctccatgcctaccttacccacccgccccacagggttcacctggccccccgggcccc
ccaggtccgcctggaagtgatggcctcccaggagagagcggccccaccggactcccgggt
aagaagggggaccaagggtctctaggacaaacaggcccagtggggccaccaggtcaagat
ggagacacaggaaatccaggcctgcagggggagagtggagtcgatggagccaagggtgat
cccggcgtactcggggaccgcggacctcccggaccctccagaaccctgaacacgggcttc
ctgttggtgatgcacagccagtcaaagacggttccctcctgtccgctgaacatgggaact
ctgtggatcggatacagcctgctgtacctggagggtcaggagaaggcccacacacaggac
ctgggtcaggccgggtcgtgcatgcgggtcttctccacgatgccgttctcttcctgtaat
atgggaacttgttcttacgccagccgcaacgataaatcctattggctgtcgaccacggcg
gctgttcccagcatcccggtgggcggagcctccatccaggaacacatcagtcgctgtgtg
gtctgtgaagccccctccgcccccgtcgctctgcacagccagacctccacccagcctaac
tgcccccccaactggaagagcctgtggaccggatactccttcctgatgcatacaggtgca
ggagatgagggtggtggacagtctctgacatcatcaggaagctgcctgacagacttcagg
gcccagcccttcgtggagtgccaggggcctcgaggcacttgccactactttgccaacatc
tacagcttctggctgaccacggtggacggcacggcctcgtcctccgacatgtcgtccagc
acgctgacggagggtcggcagcagaggaggaacatcgggaggtgtaacgtctgcatgagg
gagtga
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integrated database retrieval system
