Scomber scombrus (Atlantic mackerel): 133981123
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Entry
133981123 CDS
T10651
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133981123 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133981123 (dhx36)
03012 Translation factors [BR:
ssco03012
]
133981123 (dhx36)
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133981123 (dhx36)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133981123 (dhx36)
Translation factors [BR:
ssco03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133981123 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NB-ARC
AAA_16
NACHT
PhoH
Motif
Other DBs
NCBI-GeneID:
133981123
NCBI-ProteinID:
XP_062275991
LinkDB
All DBs
Position
5:complement(16270219..16300551)
Genome browser
AA seq
1064 aa
AA seq
DB search
MSYGYGCGGGRRGRRGGGRGGYRDGSRERWDRGGGGGSRGHSSNFDEDQGGGGQRDRPPP
HLKGREIGLWYARYGAVRRKQADRRSRAVVQMDEAREQQITKLLNSVQKDQPAPERDSRE
SRSSLSDNWHSTANRSGHSYFDGDLPEEDKHKIKSEDEEKDKSQRHLSQAAVKDETPDRW
DEEEQQQEEKEEEEEKPRTKDKDLEFLFQEVGRDSSVDDSLKRGLQRMKSDPKYQEMLKF
REKLPSYGKKEELVQLINSNRVVVVSGETGCGKTTQVTQFILDDHINRGMGSMCRVVCTQ
PRRISAISVAERVAAERGESVGNANSCGYQIRLQSRLPRRQGSVLYCTTGIILQWLRSDH
LLSSVSHLVLDEIHERSLQSDVLLVIVKELLSLRDDLKIILMSATLNAEKFSKYFDHCPM
IHIPGLAFPVEEFLLEDVLEMTRFCPQNQDRRPSWKRGFWQGRNSRPEKEEKEAEYKESW
PCYARTLQGRYSDRTIEALEILDSDEKINLELVMALIRHIVLNEEEGAILVFLPGWDNIS
SLNDLLMAQQMFKSDRFVIIPLHSLMPTVNQTQVFKRPPPGVRKIVIATNIAETSITIDD
VVYVIDGGKIKETHFDTNNNISTMAAEWVSLANAKQRKGRAGRVCPGKCYHLYNGLRASL
LDAYQLPEIMRTPLQELCLQIKILKLGFIARFLEKTLDPPTEKAVNLAIKNLVDLNALDR
SENLTALGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFIPLGKEKMAD
MRRKTLSRNSKSDHLTIVNAFQGWEEAKQRGSRYEREYCWDNFLSANTLQMLHNMKGQFA
EHLMTAGFVSSKNPKDPKSNVNSDNEKLIKAVIVAGLYPKVAMIRPSHSKKRPGVKVYTQ
ADGKVCVHPKSVNYEETEFNYTWLIYHLKMRTSSIFLYDCTEVSPFSLLFFGGDITIQKD
EGQETIAVDQWIVFRSPARIAHLVKSLKREMDSLLEEKIRHPSPVDWQNRQSKDCAVITA
IIDLITTQEKPAGSTKGYGRTWAPAPRGQHVYFNDDNDDDDDDD
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggatacggttgcggaggtgggagaaggggtaggagaggaggaggtcgagga
gggtatagagatggtagcagagaaagatgggacagaggaggaggaggagggtcgagaggg
cacagctccaactttgatgaggaccaaggaggtggtggacaacgggaccgtcctcctccc
cacctaaagggccgtgagatcggtttgtggtacgcaagatacggagcagtgaggaggaaa
caggctgacaggagatcgcgagcggtggtccagatggatgaggccagagagcagcagatt
accaagctgcttaactctgtccagaaagaccagcctgctccagagagagacagcagagaa
tccagatcctctttgtctgacaactggcattcaactgcaaacagaagtggccacagttac
tttgatggggacctacctgaagaagataaacacaagatcaaatctgaggatgaagagaaa
gataaatcacaaaggcacctctcccaggcagctgttaaagatgagacccctgacaggtgg
gatgaagaagagcagcagcaggaggagaaggaggaggaggaagagaaaccaagaacgaaa
gacaaggatctggagttcttatttcaggaagttggtagagacagttcagtggatgactcc
ctaaagagaggtctgcagaggatgaaatcagatccaaagtatcaagaaatgctgaaattc
agggagaaattaccatcctatgggaagaaagaggagctggtgcagttgatcaactctaac
cgtgtcgtggttgtgagtggggagactggatgtggaaagaccacccaggttacccagttc
atcctagacgaccatatcaaccgtggcatgggctcgatgtgccgagtggtttgcacgcag
cctcgtcggatcagtgccatctcggtagcagaacgtgtagcagcggagaggggagaaagt
gttggtaatgcaaattcttgtggttaccaaatccgcttgcagagccggttaccacggaga
caaggttcggtcctgtactgtacaacaggcattattcttcagtggcttcgctcagaccat
ttgctgtccagtgtcagccacttggttttagatgagatccacgagagaagcctgcaatct
gatgttttgcttgttattgtgaaagagctgctcagcctccgagatgacctcaagattatc
ctcatgagtgccacgctcaacgcagagaagttctctaaatatttcgatcattgtccaatg
atccacatccccggcttggctttcccggtggaagagttcctgctcgaggatgtgttggag
atgaccaggttttgtccccagaatcaagaccgtcgcccatcctggaaaagaggattttgg
cagggacgcaactccagacctgagaaggaggagaaagaggctgaatacaaggagagctgg
ccttgttatgcacgcacacttcagggcagatactctgacaggaccattgaggcactggag
atattggacagtgatgagaagattaacctggagctggtcatggcactgatccgccatatt
gtgcttaatgaggaggaaggagctatcttggtcttcctgcctggctgggacaacatcagc
agtctcaatgacctgctaatggctcaacagatgttcaaatcagaccggttcgttatcatc
cctttgcattccctcatgccgactgttaatcagacacaggtgttcaaaaggcctcctcct
ggagtaagaaagatagtgattgctacaaatatagctgagaccagcatcaccatagatgat
gttgtttatgtgattgatggagggaagattaaggaaacccactttgacacaaacaacaac
atcagcactatggcagccgagtgggttagcctggccaatgccaaacagaggaaaggacgc
gctggcagagtatgtccagggaagtgctatcatctatacaatggtctcagggccagcctg
ctggatgcctatcaattacctgaaatcatgaggacaccactgcaggagctgtgcttgcag
atcaagatattgaagctcgggtttatagctcgattcctggaaaaaactctggaccctcct
actgaaaaggccgtcaatctagccatcaagaacctggtagacctgaacgccttggaccgt
tcagagaatctcacagctctaggtttccacctggctcgtctgccggtggagcctcacatc
ggaaaactcatcctgttcggagctctgttgggctgcctcgaccctgtactcaccatcgcg
gcttcactcagcttcaaagaccctttcttcattcccctgggtaaagagaagatggcagac
atgaggagaaagacactgtctagaaactccaagagtgaccacctcactattgtcaatgcc
ttccagggttgggaggaagcgaaacagcgtggttccaggtatgagagggagtactgctgg
gacaacttcctgtctgccaatacactccagatgctgcacaatatgaagggtcagtttgct
gaacatctaatgactgcaggttttgtgagcagcaagaaccccaaggaccccaaatctaac
gtcaactcggacaatgaaaaattaattaaagcagtgattgttgctggactgtacccaaag
gtggccatgatcagaccatctcacagcaaaaagaggcctggggttaaggtgtacacccaa
gctgatggaaaggtgtgtgtccacccgaaatctgtcaattatgaagagaccgagttcaac
tatacttggctcatctatcacctaaagatgagaacgagcagtatcttcctgtacgattgc
actgaggtgtccccgttctccctgctgttctttggaggtgacatcaccatccagaaagac
gagggccaggagaccatcgcagtggaccagtggatcgtcttcagatcgccagcacgcatc
gctcaccttgtgaagagtctaaagagagagatggattctctgctggaggagaaaatccgt
cacccttctccagtggactggcaaaaccgtcagtccaaagactgtgctgtcatcacagcc
atcatagacctcatcactacccaggagaagcctgcaggcagcactaaaggctatggcaga
acgtgggcgcctgccccgagaggacagcacgtttacttcaatgacgacaatgatgatgat
gatgacgatgattag
DBGET
integrated database retrieval system
