Scomber scombrus (Atlantic mackerel): 133981468
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Entry
133981468 CDS
T10651
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133981468 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ssco03310
]
133981468 (roraa)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
133981468 (roraa)
Nuclear receptors [BR:
ssco03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
133981468 (roraa)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
133981468
NCBI-ProteinID:
XP_062276146
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Position
6:18728353..18917250
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AA seq
519 aa
AA seq
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MESPPDPASDPGNSASEPATPVRETPVNLETLRKADHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
SYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacagcgcgtcggagccggctacc
ccggtcagggaaaccccggtaaacctggagacgctccggaaagcggaccatccagccccg
gttcgaaggcagacctgttccagcaccaacagaggtatttctgtaacaaagaagacacat
acctctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gcagcctactcctgcccccgtcagaagaactgcctgatcgaccgtaccagccgcaaccgc
tgccagcactgccggctgcagaagtgcctggcagtgggcatgtcacgagatgcggtgaag
tttggtcgcatgtcgaagaagcagcgagacagcctctacgctgaggtccagaagcaccgg
ctgcagcagcagcagcgtgaccaccaacaacagcccggggaggcggagccactcacacct
agctatggcctctcagccaatggcctcacagagctccatgatgacctcagtggctacatg
gatggtcacacccctgatggcagcaaaccagactcggcagtcagcagtttctacctggac
atccagccatctcctgaccagtcaggcctggacatcaatggcatcaagccggagcccatt
tgcgactttgcccctggctctggcttcttcccttactgctctttcaccaatggagaaacc
tcccccaccgtgtccatggctgaactagagcacctggcccagaacatctccaagtcacat
atggagacatgtcagtatctgagggaggagctgcagcagatgacctggcaggcctttttg
caggaggaggtggagagctaccagagcaagcccagggaagtcatgtggcagctgtgcgct
atcaaaataacagaggccattcagtatgtggtggagttcgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctttggaagttgtg
tttgtcagaatgtgccgtgcctttgactcacaaaacaacacagtctattttgatggaaag
tatgccggacctgatgtgttcaagtctttaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctcc
gcctttgtgttgatgtctgccgaccgatcctggctccaggagaaggtgaaggtagagaaa
ctccagcagaagatccaactggctctccagcacgtcttgcagaagaaccacagagaggat
ggtatacttacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagtaggcat
acagaaaagcttacagctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cccttatacaaggagctgttcggatcagactttgagcagtccatgcccgttgacgggtag
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