Scomber scombrus (Atlantic mackerel): 133981536
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Entry
133981536 CDS
T10651
Symbol
irf7
Name
(RefSeq) interferon regulatory factor 7
KO
K09447
interferon regulatory factor 7
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04620
Toll-like receptor signaling pathway
ssco04621
NOD-like receptor signaling pathway
ssco04622
RIG-I-like receptor signaling pathway
ssco04623
Cytosolic DNA-sensing pathway
ssco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
133981536 (irf7)
04621 NOD-like receptor signaling pathway
133981536 (irf7)
04622 RIG-I-like receptor signaling pathway
133981536 (irf7)
04623 Cytosolic DNA-sensing pathway
133981536 (irf7)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133981536 (irf7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133981536 (irf7)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
133981536 (irf7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
133981536
NCBI-ProteinID:
XP_062276268
LinkDB
All DBs
Position
6:complement(12624793..12629036)
Genome browser
AA seq
430 aa
AA seq
DB search
MQSPPKPQFASWLIEQVDTGQYTGLCYMGQNKFRVPWKHNARRDCNDEDGKIFRAWAIAS
GKINEFPNDKARWKTNFRCALNNLAVRFKMIEDNSKNSDDPHKIYQIINTEYNYECLPTQ
DSQEDSDMIPDIYCSPTEDFPSANEYNLIKNFMAMDLVNHPTEEWVQPYAQENPVLGSYP
AVVTAENLQQPLPDQPAYIQANSVFSSPPQPSIWDLEISIHYRKKEMLKVVVNTARLQLH
YHHEVPELNAQHLCFPSTDGLLDHKQIEYTNCILNSIQRGLLLEVRETGIYAYRQDRCHV
FASTGDPSVAHGNPEKLPQNTMVELLSFETYVNELKQFKENNGGSPSYTINMCFGEKFPD
GKPLEKKLIVVQVVPLICRHFHEMAQMEGASSLHSANVSLQISHNSLYDLINSVFGLPTV
EAAEPFQNQM
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagccctcccaagccacagtttgccagctggctcatagagcaagtggacacaggc
cagtacacaggcctgtgctatatgggccaaaacaagttcagagtcccctggaagcacaat
gccagaagggactgcaatgatgaggatggtaaaatattccgggcatgggcaatagcaagt
ggtaaaatcaatgagttccccaatgacaaggccaggtggaaaaccaacttccgctgtgct
ctgaacaacctcgccgtgcgcttcaagatgatagaggacaattccaagaattctgacgac
cctcataaaatctaccagattatcaacactgagtataattatgaatgtctgccaacacaa
gactcccaggaggattctgacatgattccagatatctactgctctcccacagaggacttc
ccctcagcaaatgagtacaatctgattaaaaatttcatggccatggatcttgtcaaccat
ccaaccgaggagtgggtacagccctatgcccaggaaaatccagtccttggaagctatcct
gctgttgtaacagctgagaacctccaacaacctttaccagatcagccggcttacattcag
gcaaattcagtcttcagttcgcctccacagccaagtatctgggacctggagatctcgatc
cactacaggaaaaaagaaatgttaaaggtagtggtgaacactgctcgtctgcagctccac
taccaccatgaggtccctgagctcaacgcccagcatctctgtttcccctccactgacggc
ctgctggatcacaaacagattgaatacaccaactgcatccttaacagtattcagagaggt
ctactcctggaggtgcgggaaactggtatctatgcctacaggcaggacaggtgccatgtg
tttgccagcactggtgaccccagtgtggctcacggtaacccagaaaaactgccccaaaac
acaatggtggagctcctcagttttgagacgtatgtgaacgaactgaaacagttcaaagag
aacaacggtggctctccgtcttacaccatcaacatgtgctttggagagaagtttcctgat
ggaaaacctttggagaagaagctcatcgtagtccaggtggtccctctgatctgccgacac
tttcatgagatggctcagatggagggagcttcgtctcttcacagtgccaacgtcagcttg
cagatctcacacaacagcctctacgatctcattaactcagtctttggtcttccaacagtt
gaagctgctgaacctttccaaaatcagatgtga
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