Scomber scombrus (Atlantic mackerel): 133981800
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Entry
133981800 CDS
T10651
Symbol
lamb4
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-4
KO
K06245
laminin, beta 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133981800 (lamb4)
04518 Integrin signaling
133981800 (lamb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133981800 (lamb4)
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GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMININ_IV_B
LAMB1
LAMB4
DUF6933
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
133981800
NCBI-ProteinID:
XP_062276636
LinkDB
All DBs
Position
6:complement(72243..114104)
Genome browser
AA seq
1850 aa
AA seq
DB search
MNPNLHLSPESKELSAPLLTVCTKQTASPRAVRLQPETIRPITMIFIFIFIFIGLLPAAQ
LQLQHQQDQQDQLDQQDQLDQCPRGSCNPQLGDLMVGRAPQLSASSTCGLHGPNNYCIIG
YLEEEQKCFTCDSRLPYSRYSNPDSHRIENVITTFDPERKMKWWQSENGVHHVSVQLDLE
TLFQFSHLVLTFKSFRPAAMLVERSKDFGRTWKVFRYFAEDCLLHFPSVSDQTADSIDDV
VCDSRYSGSEPSSDGEVVLKALDPIFEIENPYAPEIQELITMTNIRINFTRLFTLGDTLL
GRRRRNPQDKYYYALYNMVVRGSCFCNGHASQCMPLDGGRGDVFSQPGMVHGRCVCHHNT
AGENCERCRDFHHGSPWRPGGEDDVCRRCDCNGHSDSCHFDAARFEATGGVSGGVCDDCR
HDRVGPQCERCRPFLFQDPQRAPEDPNACIPCDCDPLGSQGGGLCDPLSGQCVCKGNVDG
QRCDRCKHGFYGLRHDDLAGCQKCRCHALGSSGSCDQLTGRCECDRLASGEQCDRCVAGF
WGLGDSVFRCSPCDCDTGGAQSNTCSPYDGQCTCLPNMAGRRCTEPTPGHFLPPLDYFLY
EAELAAALDDGNSAAALRDPTVSPDCAQYFRERGFGFQLSNGRVVLIRRTRRARLRRQTR
QPGRIPLEPGHALQIIPRQRAPGQPITWSGLGLVRVQDGAGLRFTVDNLPSSMDYQLVIR
YEPETPSDWLASVSVIPLSPGDSGCSSNPTGRKTLILPGNARGGVLDSPLCLNAAARYLV
DVSFNVQSGPETSHILIDSMGLIPIIESIRDFCSQSDLDSFRRFRCVGLAAELDSQESLP
EVCEALIGSMSARIHNGAVSCRCNVIGSLGPSCSKLGGLCECKPNVIGRCCDTCAPQTFG
FGPDGCKPCQCDSSGSVSELCDQVRGQCACRSGVTGRRCGHCQTGFWGFPRCRPCECNGL
SDVCDDQSGECQNCREHATGSHCDRCVEGYYGNPASRQPCQPCLCPDIQGSGRFFASSCD
QNPQTLGLTCSCWEGHIGPQCNRCSPGFYGDLTLPGARCEECPCNNNIDPDDRDACDSVT
GKCLHCLHNTMGPRCQNCKPGYYGNALEQGCKECSCDRRGTEVTRCPLGSPCFCDQTTGQ
CPCRTGAMGVLCDECEDGYWNLDGASGCQPCSCDPANSFSNICNKVSGQCPCRPEFGGRQ
CDECGENHFGNPDLQCISCDCNMEGTMRPSCDPETGECMCRTGVTGIFCDECAPGYDSKF
PSCEECHPCTALWAENVTDVQRAAQRMRTFIPRQGDDQPGHNRHRQRMLEMHSKLEGLAN
LTALSPPKVEKMAKLYQKIGKLKDSIDPNMILISPTSLLNTEIDNIHHEFKKLLNNLKEK
LMGQPDDDDDGDDEDLEEMLDEIQKLHKAFLSDEKRVKNANEALEDSMDTRQEAKHKLSM
CSSRGDLAPLEKSVKALSVVGLNRKICGEPGAAQEDCSGCGGALCRLPLGNRKCGGPNCD
GVVPPGENASETADNAKEKLITLSGKLQESKDKINDAQQVAQNTKVLTKNLQDRINNNTD
SWERDKNQTKELIQRVKDYLLDEMVPPEDIEKMARAVLDIQLPRSPDEIRSMISTINDLL
SNATNFQADMKKLEQQAKDAQDLLQKAQELKEQTKNIDMKKISQDIYEAEKAQSKANDDL
ETASEDKDMAKDRIREITDKLGDIETKLMSPRPKELLDDIDALKRKTDQNREQAEEAKEA
SDSATDSSKDAETELDNVRKQFEVLKQEKGNQTVQDEAGKRLKNIVDEVEMLRRQVEDKQ
RLIEDVEKKIQQLISSKQQKAAVVAGLLKQVDDLRQEISKRAEGYINCSS
NT seq
5553 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccaacctccatctgagccctgagtccaaagagctcagtgctcctctgctgaca
gtctgcacaaagcagacagcctcaccgagggccgtcaggcttcagcctgagaccatcaga
ccgatcaccatgatcttcatcttcatcttcatcttcatcggtcttcttccagcagctcag
ctccagctccagcaccagcaggaccagcaggaccagctggaccagcaggaccagctggac
cagtgtccccgcggctcctgtaatccgcagctcggtgacctcatggtgggtcgggcccct
cagctctcagcctcctccacctgcggccttcatggacccaataattactgcatcatcgga
tacttagaggaggagcagaaatgcttcacgtgtgactctcggctgccgtacagtcgctat
agcaaccccgacagccaccgcattgagaacgtcatcacgacctttgaccctgagcgtaaa
atgaagtggtggcagtctgagaacggagttcatcacgtcagcgtccagctggacctggag
accctgttccagttcagccatctggtcctcacctttaagagtttccgtccggcggctatg
ttggtggagcgttcgaaggacttcggacgaacctggaaggttttccgatattttgcggag
gattgtttgcttcatttcccttcggtgtccgatcagacggcagacagcatcgatgatgtg
gtctgtgacagcagatactcgggatcagagccatcatctgacggagaggtggtgctaaaa
gctctggatccaatctttgaaatagagaatccgtatgcaccagagatccaagagctgatc
accatgaccaacatccggatcaacttcactcgtctcttcacgcttggcgacactctgctg
ggtcgcagacgcaggaaccctcaggacaaatattactacgctctttataacatggtggtc
cgaggcagctgcttctgtaatggccacgccagccagtgcatgcctctggatggaggacgc
ggagacgtcttcagccagcctggcatggttcacggacgatgcgtctgtcaccacaacacg
gccggagaaaactgtgagagatgtcgagactttcaccacggctccccctggaggcctgga
ggggaagacgacgtctgcaggaggtgcgactgcaacggtcactctgactcgtgtcacttc
gatgccgctcgcttcgaggcgacgggcggcgtgagcggaggcgtgtgtgacgactgtcgc
cacgacagagtcgggcctcagtgtgagcggtgtcggccgtttctgttccaggacccccag
cgagcgccggaggaccccaacgcctgcataccatgtgactgtgacccgctgggctcacag
ggggggggtctgtgtgaccctctaagcggtcagtgtgtctgtaaaggaaacgtcgacggg
caacgatgcgaccgctgcaaacacggattctacggtctgagacacgacgacctggccggc
tgccagaaatgcaggtgtcatgctttgggaagttcggggtcatgtgaccagctgacagga
agatgtgaatgtgaccgtctggcaagcggagagcagtgtgaccgatgtgtggcaggtttt
tggggtctgggagactctgtgttcaggtgttcaccgtgtgactgcgatacaggaggagcc
caaagcaacacgtgttctccttatgacggacagtgcacctgtctgcccaacatggcgggt
cggcgctgcaccgaacccacccccgggcacttcctgccgccgctggactacttcctgtat
gaggcggagctcgctgccgcgctggatgatgggaactctgctgctgctctgcgggacccg
acggtctccccggactgcgctcagtatttcagggaacgaggatttggcttccagctctct
aacggtcgagtggttctgatccggaggactcggcgggcccgcctcaggaggcagactcgg
cagccgggccggatcccactggaaccgggtcacgccctgcagatcatcccccgccagagg
gcgcccggccagccaatcacatggagcggcctaggattggtcagagtccaggacggagcg
ggccttaggttcactgttgacaaccttccttcctccatggactatcagctggtgatccgc
tacgagcccgagactccatctgattggctggcatcagtcagcgtcatcccgctgtcgccc
ggtgatagcggctgcagcagcaacccgacaggaaggaaaactctgattcttcctggaaac
gccagaggcggcgttctggactctccgctgtgtctgaacgcagcggctcgatacttggtg
gacgtctcgtttaacgttcagtctggacccgaaacctcgcacatcctcatcgattcgatg
ggtttgattcccatcatcgagtccatccgtgacttctgctcccagagcgacctcgactct
ttccgacgctttcgctgcgttggattagccgccgaactcgactcacaggagtcgctgcca
gaagtctgtgaagctctaatcgggagcatgtcggcccgaatccacaacggagccgtttct
tgcaggtgtaatgtgattggctctcttggaccatcctgcagtaaattgggcgggttgtgt
gaatgtaaacccaacgtgattggccgttgctgtgatacctgtgcgccacagacgtttggt
tttggacctgacggctgcaaaccgtgtcagtgcgactccagcggttcagtgtccgagctt
tgcgatcaggtcagaggtcagtgtgcgtgtcgctcgggggtgaccggtcgacgctgtgga
cactgtcagacgggattctggggtttccctcgctgtcgaccctgtgaatgcaacggcctg
tcggacgtttgtgatgatcagagcggagagtgccagaactgcagagagcacgccaccgga
tcccactgtgacaggtgtgtggagggttactatggtaacccagcctccagacagccctgt
cagccatgcttgtgtccagacattcagggcagcggacgattcttcgcctcttcctgcgac
caaaacccacaaaccctcggtctgacctgcagctgctgggaggggcacataggtccgcag
tgcaacagatgcagtcctggtttctatggcgacctgacgttgccgggtgcccgctgtgaa
gagtgtccgtgcaacaacaacatcgaccccgacgaccgagacgcctgcgacagtgtgacc
ggaaaatgtctgcactgtctccacaacacgatgggaccacgctgccaaaactgcaaaccg
ggttactatggcaacgccctagagcagggctgcaaagagtgctcctgtgaccggcggggg
acagaggtgactcggtgtcctctggggagtccctgtttctgtgatcagacgaccggacag
tgtccctgcaggacgggtgcaatgggcgtcctctgtgacgagtgtgaggacggatactgg
aacctggacggagcgtcaggctgtcagccttgcagctgtgatcctgctaactctttctcc
aacatctgcaacaaggtgtcgggacagtgtccctgtcgtcctgagttcggaggaagacag
tgtgatgaatgtggagaaaatcattttgggaaccccgacctgcagtgcatctcttgtgac
tgcaacatggagggaaccatgcgcccgtcatgtgaccctgaaactggtgagtgcatgtgt
cggaccggtgtcaccggtatcttctgtgatgaatgcgctcctggctacgactcaaagttc
cccagctgtgaggagtgtcacccctgcacggccctctgggccgaaaacgttactgacgtc
cagcgtgctgcccagagaatgagaaccttcattcctcgccagggtgacgatcagcctgga
cataatcgccaccggcaaaggatgctggagatgcactctaagctggaaggtctcgccaac
ctgacggcactttctccgcccaaggtggagaagatggcaaaactgtatcagaagatcggg
aagctgaaagacagtatcgaccccaacatgatcctgatcagcccgacttcactcctcaac
actgaaatagacaacattcatcacgagttcaagaagctgctgaacaacctgaaggagaag
ctcatggggcagccagatgatgatgatgatggtgatgatgaagacctggaagaaatgttg
gatgagatccagaagcttcacaaagctttcctgtctgatgagaagagagtgaagaacgct
aacgaagctctggaggactccatggacaccagacaggaggccaaacacaaactgagcatg
tgcagcagcagaggagacctggcacctctggagaagtcggtcaaagcgctgagcgtggtc
ggcctgaaccgcaagatctgtggagaaccaggagcagcacaggaggactgttcaggatgt
ggtggcgctctctgtcgtctgccgctgggaaacaggaagtgtggcggtccgaactgtgat
ggcgtcgttccccctggtgaaaacgcttcagagacggcagataacgccaaagagaaactc
atcacgctctctggaaaactgcaggagtccaaagacaagatcaatgacgcccaacaggtg
gctcagaacactaaagttctgaccaagaaccttcaggatcggatcaacaacaacacggac
agctgggagagagacaagaaccaaaccaaggagctcattcagcgagtcaaagactacctg
ctggatgagatggttcctccagaggatatcgagaagatggcccgagcagtgctggacatc
cagttaccacgatcacctgatgagatccgctccatgatcagtaccatcaacgatctactg
tccaatgccaccaacttccaggcagacatgaagaagctggaacagcaggccaaggatgcc
caggacctgctacagaaagcccaggagctcaaggaacagacgaagaacatcgatatgaag
aagatcagccaagatatttatgaagcagagaaagctcaaagcaaagccaacgacgacctg
gagaccgccagcgaagacaaggatatggccaaagaccgaatccgagaaattacagacaaa
ctgggcgacattgagacgaagcttatgagccctcgacctaaagagctgttggacgacatc
gacgccctcaagaggaaaactgaccagaaccgagagcaagccgaagaggccaaagaggct
tcggactcagctacagacagcagtaaagacgcagagacggagctggacaatgtgaggaag
cagtttgaggtcttaaagcaggaaaaagggaaccagacagttcaggacgaagctggaaaa
cgtctgaagaacatcgtggacgaagtggagatgctgaggagacaagtggaggacaaacag
cgactcatagaagacgtggagaagaagatccagcagctaatcagcagtaaacagcagaaa
gctgctgtcgttgctggtttgttaaaacaagtggatgatcttcgccaggaaatctccaaa
cgagctgaaggatacatcaactgctcctcttaa
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integrated database retrieval system
