Scomber scombrus (Atlantic mackerel): 133981932
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Entry
133981932 CDS
T10651
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04110
Cell cycle
ssco04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
133981932 (smc1b)
04114 Oocyte meiosis
133981932 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133981932 (smc1b)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
133981932 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
133981932 (smc1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_29
SbcC_Walker_B
Motif
Other DBs
NCBI-GeneID:
133981932
NCBI-ProteinID:
XP_062276792
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Position
6:6149142..6167507
Genome browser
AA seq
1252 aa
AA seq
DB search
MGYLRQIDIENFKSWRGKQVIGPFMRFNCIIGTNGSGKSNVMDALSFAMGERAASLRVKH
LRELIHGAHIGQPVSRSGSVAMRYRDDLDQETVYCRIISGDSSEYRINGVHVTLAKYLEE
LEKIGIVTRARNCLVFQGAVESIALKDPKERTKMFELISQSKEFAAEYEKKKEALQRAKE
DTQFQFNKKKSATAERKQVSMEKTEAQKYQTLVDDLHQNRLQLSLAELYHNEKGIGVLSD
TLTEEQQTAAAQNNILVNSDQTLKTYKKEHGRLTRELQHMEKEIRAQEHVLSQSRSQYIK
AKVNTSHHKKKADGIRDTLKKGQKQITIKEQDLAEGRQEIAELERTWKNYEKQAKKEGVS
RMDIDLDEDQLERYKELKELVRKQSAVLSQQADKLDWEVKADIEKMAFDQRRKKEVEVGI
RNNQTQLEDLTRRAEKLEEYTMMCQSTLDESRQLEESLTAELQQGRQRSVLVNEELGQVL
EELGSASVDSHESKRQLRRKEVLERLRRLFPESVYGRLFDVCSPIHKKYQLAVTKVLGHF
MNAIVVTSEKVARDCIAFLKEERAEPETFLPIDYLEVSPLNERLREVPGVKMVVDVIQVN
NSTGAGQLRKVVQFVCGNALVCENIKEARSVAFDRKERIKTVALDGTLFAKSGIISGGSS
DLRTKARCWDEKAVAKLKERKEQLMSEIRDLMKLKRKESDLKQIIAQAQGAQTRLRYSKT
EMDNIRKKNILKCQAEISRMESEIANLESQIQMQQESVEAKNAKMEKIRNQIEKMEDVVF
DDFCAEIGLNSIREYEQEHLKHQAELDKRRLEFESHCARLNAQLEYNQEQLKQQKKKLQK
MVDTIEEEERTVVDQRKVEETLLVAVEEGDNKLLELKDELQSKKSKVAAAKSELDQKTRH
HQEFNKELVKLQRNVMSAETALEQKRLARHNLLLACKIQGLPITLLSGSLDEISEVQLDT
ESESTSATMDIYDREAQLVIDYSGLNEELRSARSVQEVEACVEKLKESVSSIEEVLHRTP
TPNLKALEKMRDVKDKLQGVTEAFDASTRSARKCSQEFEQVKARRFHRFNQCFEHVSVII
DQIYKRICRNRSAQAILSAENPDEPYLGGINYNCVAPGKRFMSMDNLSGGEKAIAALALL
FAIHSFLPAPFFILDEVDAALDNSNIGKVTSFIREESRNNMQIIVISLKEEFFSKADALL
GVYSDFDVCMLSRILTLDLRPYPLVEEENGSQTETESREARREDSRSQESSA
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgggttatttaagacaaattgatattgaaaacttcaagtcatggcgaggaaagcaggta
atcggtccttttatgcgatttaattgcataattggcaccaatggctctgggaagtccaat
gtgatggacgccctgagctttgccatgggggagagggcagcctccctccgggtaaagcac
ctaagggagctgatacacggagctcacatcggacagccggtgtccagaagcggcagcgtg
gccatgcgataccgggacgatttagaccaggagacggtctactgtcggatcatctcaggc
gactcctctgagtatcgtatcaatggcgtacatgtcactctggctaaatacctggaggag
ctggagaaaattggcattgtgaccagagctcgaaactgtctggtgttccagggggcagta
gagtccatagctttgaaggacccgaaggagcggaccaagatgttcgagctcatcagtcag
tccaaggagtttgctgcagagtatgaaaagaagaaagaagccctgcagagagccaaagag
gacactcagtttcagttcaacaagaagaaatctgccaccgcagagaggaaacaggtgtcc
atggaaaaaacagaggcccagaagtaccagacactggtggacgaccttcaccaaaaccgc
ctgcagctgagcctggctgagctgtatcataatgagaagggcatcggcgtcctcagcgac
accctgactgaggaacagcagactgcagctgctcagaacaatatactggtgaactcagac
cagacgctcaaaacctacaagaaggaacatggacgtctcaccagagagctgcagcacatg
gagaaggagatccgagcccaggagcatgtcctgtcccagtctcggtcccagtacatcaaa
gccaaggtcaacacctcccatcacaagaagaaggcagacgggatccgtgacacactgaag
aagggtcagaagcagataactattaaagagcaggatctggcagagggtcggcaggaaatc
gctgagcttgagaggacctggaagaactatgagaagcaggccaagaaggagggagtctcc
aggatggacatcgacctggatgaggatcagctggagcgatacaaagagctgaaggaactt
gttagaaagcagagcgccgtcctcagccagcaggcagataagctggactgggaggtgaaa
gcggacatcgagaagatggcattcgaccagcgcagaaagaaggaagtggaggttgggatc
aggaacaaccagactcagctggaagatttgactcgcagagcagagaagctagaggagtac
accatgatgtgccagtcaaccctggatgagtcccgtcagttggaggagagcctgactgca
gagctgcagcagggccgccagcgcagcgtgctggtgaacgaggagctgggccaggtgctg
gaggagctggggagcgcttccgtggacagccacgagagcaaacgccaactgcggcgtaaa
gaggtgctagagaggcttcgcagactctttcctgaaagtgtgtatggccgtctgtttgac
gtgtgcagccccatccataagaagtaccagctggctgtcactaaggtgcttggccacttc
atgaacgccatcgtggtgacctcagagaaagtggcccgggactgtatcgccttcctcaaa
gaggagcgagccgaacctgagaccttcctgcccattgactacttggaggtgagccctctg
aacgagcgactgagggaggtcccaggtgtcaagatggtggtggatgtcatacaggttaac
aattccacaggtgccggtcagctgaggaaggttgtgcagtttgtctgtggcaacgcgctg
gtgtgtgagaacatcaaagaggcgaggagcgtggcttttgacaggaaggagcgcattaag
acagtggctctggatgggacgctgtttgcaaagtcaggtattatctctggaggctccagt
gacctgcggaccaaagcgcgctgctgggacgagaaggccgtggcaaagttgaaggaacgc
aaggaacagctgatgtctgagatacgcgatctaatgaagctgaagcggaaggagtcagac
ctgaaacagatcatcgcacaggctcagggtgctcagacccgtctcagatactccaaaact
gagatggataacatccggaagaaaaacatcctcaaatgtcaagctgagatttctcgcatg
gagagtgaaatagcaaacctggaatctcaaatccagatgcagcaggaaagcgtagaggcg
aaaaatgcaaagatggagaagatcagaaaccagatcgaaaagatggaggacgtggtgttt
gatgacttctgtgctgagatcggcctgaacagcatcagagagtatgagcaggagcacctg
aaacatcaggcagagctcgataagaggcggctggagtttgagagccattgtgctcgtttg
aatgcacaactggaatataatcaagagcagctgaagcagcagaagaagaagctccaaaaa
atggtggacaccatcgaggaggaggagaggacagtggttgatcagaggaaggttgaggag
acgctgctggtggcagttgaggaaggtgataacaaactactggagctgaaggacgagctg
cagtctaagaagagcaaggtggccgctgctaaatctgagctggaccagaaaactcggcac
caccaagaattcaacaaagagctggtgaagcttcagcggaatgtgatgtctgcggagacg
gctttggagcagaaacgtttggccagacacaacctgctgctggcctgtaagatccagggc
ctgcccatcactctgctgtcagggagcctggatgaaattagtgaggttcagctcgacaca
gaatctgagagcacttcagccaccatggacatctacgacagagaggctcaactagtgatc
gactactctggtctgaatgaagagctcaggagtgcacggtcagtgcaggaggtggaggcc
tgcgtggagaaactgaaggagtcagtttcctccatagaggaagtgctgcatcgtacaccc
acacccaacctgaaagctctggagaagatgagggatgtgaaggacaaactacagggagtg
acggaagcatttgatgccagcaccagatcagcgaggaagtgcagccaagagttcgaacaa
gtcaaagctcggcgcttccaccgcttcaaccaatgcttcgagcacgtgtctgttattatt
gaccagatctataaaagaatatgcaggaacagaagcgctcaggctattctgagcgctgag
aatccagacgagccgtacctgggcggcatcaactacaactgcgtggctccagggaaacgc
ttcatgtctatggacaatctgtccggtggagaaaaggccatcgctgccctcgccctgttg
ttcgccatccacagcttccttcctgctcctttcttcattttggacgaggtggatgcagcc
ctggacaactcaaacatcggaaaggtgaccagcttcatcagggaggagtccagaaacaac
atgcagatcatcgtcatctccctgaaggaggagttcttctccaaggccgacgctttgctg
ggagtttactcagattttgatgtttgcatgttaagccgcatcctgaccctggatctgcgt
ccctaccctctggtggaagaggaaaatgggagtcagacggagacggagtccagagaggcc
agaagagaggactcccgtagtcaggaatcatctgcatga
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