Scomber scombrus (Atlantic mackerel): 133981941
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Entry
133981941 CDS
T10651
Symbol
acanb
Name
(RefSeq) aggrecan core protein
KO
K06792
aggrecan 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
133981941 (acanb)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
133981941 (acanb)
Lectins [BR:
ssco04091
]
C-Type lectins
Lecticans
133981941 (acanb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133981941
NCBI-ProteinID:
XP_062276804
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Position
6:complement(7312845..7325265)
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AA seq
1312 aa
AA seq
DB search
MTPLLLLCVLLPLISATPFEEHDEMDGTLRVSIPMEVPLRPLMGGKVVVPCYFQDNTVND
PGAPTVAPLSHRIKWSYVTKEKVTTILVASEGKVNVEIEYLDRVTMVNYPLVPTDATLEI
TELRSKDSGTYRCEVTHGIEDNYDSVEVQVQGIVFHYRAISTRYTLTFEKAKAACIQNSA
TIATPAQLQAAYDDGYHQCDAGWLSDQTVRYPIHEPRERCFGDKETFPGVRTYGVRDVNE
TYDVYCFAEKMSGRVFYSMSIEKFTFYEAGDQCGKLGARLATTGELYLAWKSGMDVCNAG
WLADRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPYPDTRYDAICFSAGEDEGAVPG
RTTPFPDIIRMTPAPGLYPGLTPRPGGEEIKRGEVGTLSPLPIPPSVVDTFIKVTPGLDL
TDAAMGPTGVVFHYRPITGRYTLSFLEAHKACQSIGAAVASPQQLQAAFEKGLHQCDAGW
LRDQTVRYPIVSPRDNCAGNLPHIPGVRSYGLRPANELYDVFCYVERLEGEVFFTSDYDS
FSYEEAVQHCHKLNTTLATPGHLYAAWNKGFDKCRPGWLMDRSVRYPITNPRAHCGGGQV
GVNIIYAYPNQTGFPDEHSRYDAYCFKAELPITHVENETSMNLTMVVVDEIINKTTITTQ
FPPVTPILPPVHVDASGSGSADHSASGEISGESSTSGASGDVSGSGREVVFSGRTDISSG
DQSASGGPQEAEGGSAVTFTSGEPGSASASGSGEGFDRQHSGFDQSGSGFTSASGGISGS
GGESLITIVDEKIEEVLTHQTFTEQELGSGGFLTSGMSGSGIMSGSGSMFGSGIMSGSGS
MSGSGSMSGSGSMSGSGTSGFSGISFIDHSGVDLTVQSSEQEAYRPSGSGYPSGFPSGFP
SGASGSGSASGDSSQHRGDVIYLTDDGMMEVTMQQPTRVPEQGRGVVEISGQGSGSGFHY
EFSGTLDQSLHVSGSGAHHEKPSTEELSIALQPGSTMAYPEYVANLAQSGHEEEEQESRA
GPTVYVVTPDAATGSPTTAPSVSLSTPAVLEEPEAVEDPCDPNPCGSGSCSVQGELAVCQ
CPNGFSGEDCSTPVQGCAEGWLEFKGSCYLHFAERHTWSEAEQRCQELNAHLVSISSQEE
QQFVNSNGQDYQWIGLNDKDVQNEFHWTDGTPLTFVNWRPNQPDNYFDSGEDCVVMIWHE
GGQWNDVPCNYHLPFICKTGPVTCGAPPEVEHSRPMGGSREHYPVNSIVRYQCDPGFTQR
HLPVIRCMANGQWEEPQVECIEATANSNRLHKRSLRSRSKGVSSQQEQRKLL
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgacccccctgcttctgctgtgtgtgctcttgcccctcatctcggcaacgccatttgaa
gaacatgacgagatggatggcacattgcgtgtcagcatcccaatggaggtgcctctccgt
cctctgatgggcgggaaggtagtggtgccatgctacttccaggacaacactgtcaacgac
cccggtgccccaactgtcgctccgctctcccatcgtatcaaatggtcctacgtcaccaag
gagaaagtcaccacgatactggtggcatcagagggaaaagttaatgtggagatagagtat
ttagacagagtgacaatggtcaactacccactcgtgcccaccgatgccaccctggagatt
acagagctgaggtccaaagattctggcacctaccgctgcgaggtgacgcatggcattgag
gataactacgactctgtggaggtccaggttcagggtattgtgttccactaccgagccatc
tccacccgctacaccttgacgtttgagaaggcaaaggctgcttgcattcagaacagtgcc
accatcgccaccccagcccaacttcaggccgcctacgatgatggataccaccagtgtgat
gctggatggctgtcggatcagactgtcaggtaccccatccatgaaccacgtgaacgttgc
tttggagacaaggagacctttcctggagtgagaacctatggcgtgagagacgttaacgaa
acctacgacgtgtactgttttgctgagaaaatgtcaggcagagtcttctactctatgtct
atagagaagtttaccttctacgaagccggagatcagtgtggtaaactcggtgctcggctc
gccaccaccggagagctttacttggcctggaagtctggcatggatgtgtgtaacgcgggc
tggctggcagacaggagcgtacgttaccccattaacatcgccaggcctcagtgtggagga
gggcttctgggagtgagaaccgtctacctgttccccaaccagacaggatacccctaccca
gacacccgctacgacgccatctgcttcagtgctggtgaggatgagggtgcagtgcctggg
aggaccacccccttcccagacatcatccgcatgacacccgcccctgggctttatccaggc
ctcaccccccgacctggaggtgaggagatcaagcgtggagaggtgggcaccctctcccca
ctgcccatcccacccagtgtggtggacacattcattaaagtgactcctggactggatctc
acagatgctgccatgggtcctacaggtgtggtgttccactaccgacccattacaggccgg
tacacactgtccttcttggaggctcacaaagcctgtcagagtatcggagcggccgtcgct
agcccccagcagctacaggcagcctttgagaaaggtctgcaccaatgtgatgctggctgg
ctccgcgaccagactgtcaggtatcccatcgtgtcacccagagataactgtgctggtaat
ctgccacacattccaggggtcagatcctatggcttgaggccagccaacgaactctatgat
gtgttttgttacgtagaacgtctggaaggtgaggtcttcttcaccagcgactatgacagc
ttctcctatgaggaggctgtgcagcactgccacaaactcaacaccacccttgccaccccc
gggcatctgtacgccgcctggaataaaggatttgataagtgccgtccaggctggctgatg
gaccgcagtgtccgctaccccatcacaaatcccagggcccactgtggtggtggccaggtg
ggggtcaacatcatctacgcctaccccaaccaaaccggcttccctgatgagcactcacgc
tacgatgcctattgtttcaaagctgaactcccaatcacccatgttgaaaatgagaccagt
atgaacttgacgatggtggtggtggatgagatcatcaacaagacaaccatcacaactcag
tttcccccagtgacacccattttacctccagtccatgttgatgcatcaggctctggttca
gctgatcattcagccagcggggaaatctcaggggagtccagcacctcaggcgcaagtggt
gacgtctctggctcaggacgggaagtcgtcttcagcggtcgcactgacatctcctctgga
gaccagtctgcctctggaggtccacaggaggcagaaggtggtagtgctgtcaccttcaca
tctggagaacccggtagtgcatctgcctctggatctggggagggatttgacagacaacac
tcaggcttcgatcaatcaggatcaggttttaccagtgctagtggtggtattagtggtagt
ggtggagagtcattgatcaccatagtggatgagaagattgaagaggtgttgacccaccaa
acattcactgaacaggagttaggcagtggaggcttcctgacatcaggtatgtccggatca
ggaattatgtccggatcaggaagtatgttcggatcaggaattatgtccggatcaggaagt
atgtccggatcaggaagtatgtccggatcaggaagtatgtctgggtcaggcaccagtgga
ttctctggcatatcattcatcgatcacagtggtgttgaccttacagtccagtcatctgag
caggaagcgtatcgtccctctggatcagggtaccccagtggatttccaagtggttttcca
tctggtgcatcaggcagcggctctgcctctggagactcttcccagcatcgtggtgatgtc
atctacttaacagacgatggcatgatggaggtaaccatgcagcaaccaacacgtgttcct
gagcagggccggggggtagtagagattagcgggcaagggagtgggtcagggttccactat
gaattcagtggcactttggaccaaagcttgcatgtctcaggcagtggagcccatcatgaa
aaaccatccactgaggagctttccatagccctacagcctggatccacaatggcttatcca
gagtacgttgctaatcttgctcaatcaggacatgaagaggaggaacaggaaagccgtgca
ggaccaacagtttatgttgtgactccggatgcagccaccggcagcccaaccacagcacca
tcagtgtcattatcaacccctgctgttttggaggaacctgaagcagtagaagacccctgt
gatccaaatccctgtggttcaggatcctgctctgtgcagggagagcttgctgtgtgtcag
tgtcctaatggtttctctggtgaagactgctcaacacctgtacagggctgtgcagagggc
tggttggagttcaagggcagctgttacctccactttgcggaacgacacacctggtctgag
gctgagcagcgctgccaggagctaaacgctcacctggtcagcatcagctcccaggaggag
cagcagtttgtgaactctaatggtcaggactaccagtggataggactcaatgacaaagat
gttcagaatgagttccactggacagatggcactcctctgacatttgtgaactggaggccc
aaccaaccagataactacttcgactccggagaggattgtgtggtgatgatctggcatgag
ggtggtcagtggaacgatgtgccctgcaactatcaccttcccttcatctgcaagactgga
cctgtcacatgtggggcaccccctgaggtggagcacagccggccgatgggcggcagtaga
gagcactaccccgtcaactctatagtccgctaccagtgtgacccaggcttcacacagcgc
cacctgccagtcatacgctgtatggcaaatggacagtgggaggagccacaagtggaatgt
atagaggccaccgccaacagtaacaggctacacaaaagatccctcagaagcagaagtaaa
ggggtcagcagccaacaggaacagaggaagctgctctga
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