Scomber scombrus (Atlantic mackerel): 133982065
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Entry
133982065 CDS
T10651
Symbol
nlrc5
Name
(RefSeq) NLR family, CARD domain containing 5
KO
K22615
NLR family CARD domain containing 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssco04054
]
133982065 (nlrc5)
Pattern recognition receptors [BR:
ssco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
133982065 (nlrc5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_NXF1-5
Atypical_Card
LRR_8
AAA_25
LRR_R13L1-DRL21
NOD2_WH
AAA_22
ABC_tran
Motif
Other DBs
NCBI-GeneID:
133982065
NCBI-ProteinID:
XP_062276951
LinkDB
All DBs
Position
6:29393873..29430900
Genome browser
AA seq
1935 aa
AA seq
DB search
MDEELGPNEEDVKFVLAQESSELLHILSRQSPEVVMELCQMMPGGAGLTIDQPLFSSSSA
AAAAAAIAATLDYFQTASAAHCRRFLQSVCLLCENIPMHLESRLMSVAGYATSDDTQSPA
TEPVSPKHTDECEISSCSVTEEKLSSPPAEQLFIKRPRIDYWEQCIAAVIRMLQGRWKRL
TKQLVQDVQLENVWVSLRTASRVREKPDQTPGSADRGGRTPEPDLDYGSLESRVTLENFL
QGCAGKVTVLVGQAGSGKTLLTSCLGQQWSRGLGFIPSSYLFVLLEFRQLNLLSQPLSLS
DLLFHLYLPPNWDHEEKRAILDYLLSNPEQSCWVLDGYDEFHSKVTKQEVQREPLDPYTL
LPVADLISGLLNRQLLPGCTVVVTCRSRDVIDLEGISDKVGQLVGWDRHQIKEYVGNFFV
KGPSIQAKDLLLSNGHLLAMSSLPALCNICCICLQYLLLEGKKEQTRATSGDREGARGRE
ERKDVMEKEVKRVQVGTRRGREDVMMDGTNGRPNLSPTLPQIPCTLTQVYLTVLGAYLSR
DHDKGGRNVKPKTASFPHSTVPVLTSLGQYQSELCELSQLAWRGLEEGNILFQEEHITQE
VLAFSVRIELLSKVELRREDGMDLNAYCFAHLTLQEFLAALRIMTSNDVSDAELKKRFSL
KTRWMTRSDQRTVFTDSLYQYVCGLASPQCTQALVQLARTSGGTGGQTWVQKRQALVLNL
LTKLCQNNTLTGPKVLELCHCVQESQDHQLAKLVVDTRTNLELRNIRLISKDIDALAFVV
NSVGDNGIGLDFGACSMELECLDVLPRCRYIRHLSFHSRKYGDKFAKKLSSTLPQFKNLR
KLEFCGASLTATGADSLASALQKCPDITEINLSDNNLKDVGIKRIADIFTKLPRLVSVRL
GRNNTSLAAVDFLIGQMSSCLNIQRIHADGMKEVTVSFCQNSEMTRHKSKSELTISLLNQ
KWSKSEMQTVANSLACCPTLSVLDLSGGQWDVETLKILTQFLPKFSVTKKIILDDSCSSV
KGLVVLTALLSDCPAVTQLRIRLQSPVQVSMVFFEETQQPANEISKTLCLSCCDLRPADL
QNVWKSLGTSSDLTVLDLSSNSLGDKGLSKLVDALPRLSNIQEINASNNGISMEGVVLLA
GALCSHNNLTQIHISDGGRKQVILKFCSEKSDDKQQLKMFRINNSSLLPTDMTLLCRRLT
KCCSRLELDLSHSLLRDEAIVNLLKVLPKMVSLQRLNVSHSIKSTAGALKLINCLTGSGR
VTAAELRPQSESFIHFDEVKAEQASCRFTHFSLNTENMELLLEILQHGPQLSDLDLSSNQ
LDDEAVKHLVDSLPKLNITRYINLSNNRLTQQGLLDVASTLCTCDNVSGVEVGSGAEERC
LIWFGQCGGCQKTLSFRGSSLEHDHLVRLAEMVSNCPRLTKLEFKNNQLKSEWIEHFVKV
LNSSQRGGILSISFEERWIRSVEAVRLVCRCLELNSNIRAIRVHHTTLHLSLMKSTQQTL
VSADSADPAPSMATEKIGLVDCEVHDYHIAAMSSIIKRCPLLTELDFSNNSLSLNGAEFL
CSVLPSLPNLTSLSIGSKGVMDEKLSEALLQSTAIQSLNLSGHFIYDPAAQIITKVLHRL
RSLNLSHCRWTATAGLLLVKALGQCVSLEELCLESVHLVENSRLALAQALRNTRSIRSLK
LNKIATEMGRPETNAVLDLLSSMEGLTRMEEIELEGWRMADTGAEWLIRLLPIWTELRKI
SLSDNHISDQSGEKLLEALRICCHLEELHLSRNSLGDLAAAKMALVLPSLTHLVVLDVSE
NKIGCEGSVSLSKAIMGTKNLTKIYLTAVGTPELCAVVANLAHCPLIQDVGLGWNGCGDE
VALELARVMPLCQKMTRIDLESNSVSAAGVEALVKALQSCPALQLIRLWKNTVPSNEAQQ
LSLKDRRLNFSPTLM
NT seq
5808 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggagcttggccctaatgaggaagatgtaaagttcgtcttggctcaagaatcc
tcagagctccttcatatccttagccgtcagtcaccagaagtcgtaatggagttgtgccaa
atgatgcccggtggtgctgggttgaccatcgaccagccgctcttctctagctcttcagca
gcagcagcagcagcagcaatagcagccacgttggactatttccagactgccagcgctgca
cattgccgccgctttcttcagagtgtgtgtttgttatgcgagaacatccccatgcatctg
gagtcacggctcatgtcagtggcaggatatgcaaccagcgatgacacgcagtctccagca
acagaaccagtgtctcccaaacacacagatgaatgtgaaatttccagctgcagtgtaaca
gaagagaagctgtcatcgcctcctgcagagcagctgttcatcaaacgcccacggattgat
tactgggagcagtgcattgctgcggtcatacgtatgctgcaggggaggtggaagcgactg
acaaagcagctggtgcaggatgtccagctggagaatgtgtgggtcagcctaagaacggcc
agcagagtcagggagaaaccagatcaaacccctgggtcagcagacagagggggcagaacg
ccggagcctgatttggattatggatctctggagtctcgagtgacattggagaacttcctc
cagggatgtgcaggaaaggtgacagttctcgtgggccaggccggatcaggaaaaactctg
ctcacatcttgtttaggacagcagtggtcacgaggccttggctttataccatcatcctac
ctgtttgtcctgctagagtttcgtcagctcaacttactgtcacagcctctctccctgtcc
gacctactcttccatctctacctccctcccaattgggaccatgaggaaaagcgagccatt
ttggattacctcctttccaatccagagcaaagctgctgggtgctggatggatatgatgag
tttcacagcaaggtcacaaaacaagaggtgcaaagggaaccgttggacccgtacacactt
cttcctgtcgcagacctcatctcagggttgttaaatcgtcagcttctcccagggtgcact
gtggtggtcacctgtcgctcacgagacgtcatcgatttggaaggaatatcagataaagtg
gggcagctggtggggtgggaccgccaccagatcaaggagtatgtgggcaacttctttgta
aaaggtccctcaatccaggcaaaagatctccttctttctaatggacacctccttgccatg
tcgtccctccctgccctctgcaacatctgctgcatctgtctgcagtatttactgctggaa
ggtaaaaaggaacagacaagagctacatctggagacagggagggagcgagaggaagagaa
gaaagaaaagacgtcatggagaaagaggtaaaacgagttcaagtaggaacaagacgaggg
cgcgaagacgtaatgatggacggaacaaatggcagacccaacctatctcccacactaccc
cagataccctgcacactcacccaggtctacctcactgtccttggtgcatatctgagccgt
gaccatgataaaggaggaagaaatgtcaagccaaagacggcaagctttccacacagcact
gtgcctgtgctgaccagcctgggtcagtatcagtctgagttgtgtgagctgagtcagctg
gcctggagagggttagaggaaggcaacatcctctttcaggaagaacacattactcaggag
gttcttgcattttcagtcaggatagagctcctgtcaaaggtggagctcagacgggaggac
gggatggatctcaacgcctactgcttcgcccatctgaccttacaggagtttttggccgcg
ctcagaatcatgaccagtaatgatgttagcgacgcggagctcaagaagcgattcagcctg
aaaacccgctggatgaccaggtcagaccagaggacggtcttcaccgactccctgtaccag
tatgtatgtggtctggcgtccccgcaatgcacccaggcccttgttcaattagccaggact
tctggtggaactggaggtcaaacttgggtccaaaaacggcaagcccttgttctgaatctt
ctcacaaaactgtgtcaaaacaacaccctgactggaccaaaggtattggagctttgccac
tgtgtccaggagagccaagaccaccaactggccaagctggttgtagatacaagaaccaac
ctggagctacgcaacatccggctgatatctaaagatatcgatgctctggcttttgtagtt
aactcagtgggtgataacggcatcggtttggactttggggcgtgctcaatggagttggag
tgtttagatgttctgcccaggtgtcggtacattcgacacctcagttttcatagccggaag
tacggtgacaagtttgccaagaagctgtcttccactttgcctcagttcaaaaacttgaga
aaactagagttttgtggtgccagcctgactgccacaggagcagatagtttggcttctgct
ctacagaaatgtccagacatcactgaaatcaacctgagcgacaacaacctgaaagatgtc
gggattaaacgcatagctgatatctttaccaaactaccacgactggtctctgtaaggctg
ggtcgaaacaacacctccctggctgcagtggacttcctcatagggcaaatgtcttcatgt
ttgaacatccaacgtattcatgcagatgggatgaaagaagtgacagtatctttctgccaa
aactctgaaatgaccagacataaaagcaagtctgaactaacaatcagcttgttgaaccag
aaatggagcaagtctgagatgcaaactgttgcaaactcgttggcatgttgccccacgctg
tctgtcctggatctgtctggaggccagtgggatgtggaaactctgaagatactgactcag
tttttgcccaagttcagcgtcaccaaaaagatcattttggatgacagctgctcttcagtg
aagggtttggttgttctgactgctctgctgtctgattgtcctgctgtaacgcagctgcgt
atcagactacagagccctgtccaggtgtctatggtgttctttgaagagacacagcaacct
gcaaatgaaatatctaaaacactctgtctcagctgctgtgatctacgccctgctgatctg
cagaatgtgtggaagagtttgggaacctcttctgatctcacagtgttggatctgtccagt
aacagtttaggcgacaaaggtctgagcaaactggtggacgccctgcctcgtctcagcaac
atccaagaaatcaatgccagtaacaatggcatcagcatggagggagtggtgttgctggct
ggtgctttgtgctcccataacaacttaacacaaattcacatcagtgatgggggcagaaag
caagtgatcctgaagttctgctctgaaaaaagcgatgacaagcaacagctgaagatgttc
aggatcaacaacagcagcctgctgcccactgatatgactctgctgtgcaggagattgacc
aagtgttgctcccgtttggagttagatttgtctcacagcttgttgagagacgaggctatt
gtgaatctgctgaaagtcctgcccaagatggtgtcactgcagagactcaatgtcagccac
agtattaaatccacagccggagcattgaagctgatcaactgtttgactggtagtggaaga
gtcacagcagcagagctcaggcctcagagtgaatccttcattcattttgacgaggtgaaa
gcagaacaagccagctgcaggttcactcatttcagcctgaacactgagaacatggagcta
ctgctggagatcctacagcatggtccccaactgtctgacttagatttgtcaagtaaccaa
ctggatgatgaagcagtgaaacatttggtggattctctaccaaagcttaacatcaccaga
tatatcaatctgagcaacaacagactgacccagcaggggttgttggatgtggccagcaca
ctgtgtacctgtgacaacgtctctggtgtagaagttggctcgggagccgaggagaggtgt
ctcatctggttcggacaatgcgggggttgccaaaaaactctgagtttcagagggagtagt
ttggaacatgatcatctggtcagattagcagagatggtgtccaactgtccccgtctgacc
aaactggagttcaagaacaaccagctgaagtcagagtggattgaacattttgtcaaagtg
ttgaacagcagtcagagaggaggcattctcagtatcagttttgaggagcgttggatcaga
tctgtggaagctgttcgtttggtgtgtcgttgtctggagcttaacagcaacatacgagca
atcagggtgcaccacaccacgctacacctgtctttgatgaaatccacccaacagacttta
gtgagcgctgactcagcagatccagctccatcaatggctacagagaaaataggccttgtg
gactgtgaagtacatgactaccatattgcagctatgagcagcatcatcaagaggtgtcct
ttactgacagagttggatttttcaaacaacagcctgagtttaaatggagctgagttcctc
tgttctgttcttccctcactaccaaatctcacctctctcagcattggctccaaaggggtt
atggatgagaagctgtcagaggccctgctgcagtctacagccattcagagcttaaattta
tcaggtcatttcatttatgacccagcagctcagattatcaccaaagtgttgcaccgtctc
cgatcactcaatctgtcccattgtagatggacagcaactgcagggctgctgcttgtcaaa
gcactgggacagtgtgtcagtctggaagaactttgtctggagtctgtgcacctggttgag
aacagcaggttggctctggcccaagcactgaggaatacccgctccatacgcagtctcaag
ctaaataagattgctacagaaatgggacgaccagaaacaaacgctgtactggatctccta
tcttctatggagggactgacacgaatggaggagatagagttggagggatggaggatggct
gatacaggagcagaatggctcatcagactccttcctatctggacagaactcaggaagatc
agtctatcagacaaccatatcagtgatcaatcaggagagaagctgctagaggccttgagg
atctgctgtcacctggaggagctccacctgtctaggaacagtctgggtgacctcgctgct
gccaagatggccctcgttctgccatcactgacacacctcgttgtcttagatgtttcagaa
aacaaaattggatgtgaaggatcggtgagcctatccaaagcaataatgggcacaaagaac
ctcaccaagatttatctgaccgctgtcggcacaccagagctatgtgctgtggttgccaat
ctggctcactgtcctctcatacaggatgtgggtctggggtggaatggttgtggtgatgaa
gtagcgttggagttagccagagttatgcctctctgtcagaagatgaccagaatcgatctg
gaatccaacagtgttagtgctgctggagtggaggccctggttaaagccctgcagtcgtgt
cctgctctgcagctcatcaggttgtggaaaaacacagtcccttccaatgaagcccagcag
ctcagtctgaaggacaggaggttgaacttctcacccaccctaatgtga
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