Scomber scombrus (Atlantic mackerel): 133982137
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Entry
133982137 CDS
T10651
Symbol
prdm11
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger protein 862
KO
K24644
PR domain zinc finger protein 11 [EC:2.1.1.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133982137 (prdm11)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
133982137 (prdm11)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
SET
Dimer_Tnp_hAT
Zn_ribbon_PRDM4
DUF6448
FOG1-like_PR
DUF7822
Motif
Other DBs
NCBI-GeneID:
133982137
NCBI-ProteinID:
XP_062277047
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All DBs
Position
6:387293..395879
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AA seq
1058 aa
AA seq
DB search
MSEKTSDLWFCEDCQDWFQKECPSHGPPLFIPDTPVDSQSANRAALSVPSGLELFSEGDE
LDVRCLDPGFPRGAVFGPYEGELVKKDKSSGFFSWIIVDLNNTYQSIDGSDETKANWMKF
VRTSSEESDRNLTAFQHGRNIYFRASRELTAGQKLRVWYSDAYIQRLHCVSQESIDRNLD
PDSVKLAVLPNVQKDFKSPCLQSALQSKASDEADGQPPAKRKKIDLIFKDVLEASLEDCS
KSRSQARSQAERKAALGSGFNASESCFNVPNLKVEEKEEENQTCEEPSTSFCPNCVKLKK
RILELEEELTRLRGEQAXSGPSRTRPPPHPEQGPIEDFHGMEPLTPTPVVLDEDDPDVDS
ADESIAADLVISPEDSSKLSSAGGRRIRRFKQEWLKKFWFLRYSPTLNEMWCHVCRQYTV
QSSRTSAFIIGSKQFKIHTIKLHSQSNLHKKCLQLYKLRMHPEKTEEMCKNMLLLFNAAY
HLALEGRPFSDLRPLAELLKKCELKVVDQYMNEGDCQILIHHIARALKEDLAEKMRLSPF
LSVIMDAQNDDLFSDMVAVYVQFSTNEGSTNTEFLSLQRLSMVSVDGYLQAMDRAFGVLG
LRFQDLLVVGLGADGTNISSGMRANLYVAVQKTFPWILCLPIMIHRPHLEVLDAISGKEL
SCLEDLENNLKQLLSFYRYSPRMMSELRSTAPTLSEETEFLGDIRAIRWIIGEPNVLNAL
IKDYLEVVAHLKEISSQTQRADAAAIALTLLQFLMDYQSVKLIYFLLDIIAVLSRLAFTF
QGEYLLVSQVEAKIGDAIQEIGQLVDCPGEYLQEFEENFRESFNGVALKNLRVAESKFQS
IREKICNRSQGILSQRLDLQSRSFAKACKVLDLSTWPHNREDLKAYGEEEIQMIFNHLES
VPSAVQEAPQARTEVRDSLVVEWKDLKADYYSMNGFKEVISHICRYKQRFPLLSRIVQVV
RVLPSSTVCCDKGRGSLHKMCKNNRSRLTLEQMNDLLTVAVNGPPITNFDGKRALDSWFE
EKSGSSYSLSAEVLNRMSADPKSVLHSVDVDTEFYPDM
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaagacatcggacctctggttctgtgaggattgtcaggactggttccagaag
gagtgtccgtctcacggcccgccgctgttcatccctgatactccggtggactcgcagtcg
gccaacagggcggcgctgtcggtcccatcgggcctggagctcttcagcgagggagacgag
ctggacgttcgctgcctggatccaggtttccccagaggagccgtgttcggtccgtatgag
ggagaactggtgaagaaggacaagtcctcggggttcttctcctggatcattgtggatctg
aacaacacgtatcaatccatcgacggcagcgatgagaccaaagccaactggatgaagttt
gttcggacctcatcggaggagagcgacaggaacctgacggcgttccaacacggcaggaac
atttacttccgagcgagtcgagagctgacggccggacagaagctcagagtctggtacagc
gacgcctacatccagcgcctgcactgcgtctcccaggagagcatcgaccggaacctggac
ccagactcggtgaagctggcggttctgcccaacgtccagaaggactttaagtctccgtgc
ctgcagtcggctctgcagagcaaagccagcgacgaggccgacggccagccgcccgccaag
aggaagaagatcgacctcatcttcaaagacgtcctggaggcttctctggaggactgcagc
aagtccaggtcccaggccaggtcccaggccgagcgtaaagcggcgctcgggtcgggcttc
aacgcgtccgagagctgcttcaacgttcccaacctgaaggtggaggagaaggaggaggag
aaccagacctgcgaggagccctccacctccttctgccccaactgtgtcaaactgaagaag
aggatcctggagctggaggaggagctgacccgtctcagaggagaacaggcgnngtccgga
cccagcaggaccaggccccccccccacccagagcaaggccccatcgaagactttcacggg
atggagcctttgactcccactccggtggttctggatgaagacgacccggacgtggactcg
gccgacgagtcgatcgctgcagatctggtgatttctccggaggactcgtcgaagctttcg
tcagcaggaggtcgaaggattcgtcgcttcaagcaggagtggctaaaaaagttctggttc
cttcgttactcgccgaccctgaatgagatgtggtgccacgtctgccgccagtacaccgtc
caatcgtctcgcacctcggccttcattatcggctccaagcagtttaagatccacaccatc
aagctgcacagccagagcaacctccataagaagtgtctgcagctgtataagctgcgcatg
catccagagaagacggaggagatgtgcaagaacatgctgctgctgttcaacgcagcgtac
cacctggccctggaaggacggcctttctcagacctccgtccgctggcagagcttttaaag
aagtgtgaactcaaagtagtggaccagtatatgaacgaaggagactgtcagatcctcatc
caccacatcgcccgggctttaaaagaagacctggccgagaagatgcgtctgtctcccttc
ctgagcgtcatcatggacgcgcagaacgacgaccttttctcagacatggtggcggtctac
gtccagttcagcaccaacgagggctccaccaacacagagttcctgtctctgcagagactg
agcatggtcagtgtggacggttatctccaggcgatggatcgggccttcggtgttctgggg
ctcaggtttcaggacttgctggttgtgggtttgggggcagacggcactaacatctcttca
ggaatgagagcgaacctgtacgtagctgtgcagaagacttttccctggatcctctgcctt
cccatcatgatccatcggcctcacctggaggtgctggatgccatcagcgggaaggagctc
tcctgtctggaggatctggaaaacaacctgaagcagctgctcagtttctaccgttactcc
cctcgcatgatgtccgagctgcgatccacagctccgacactgtcagaggagaccgagttc
ctgggagacatcagagccatacgatggattattggagaaccgaatgtccttaatgcactc
atcaaagattacctggaggtagtcgcccacctgaaggagatcagcagccagacgcagagg
gctgatgctgctgccatcgctctgaccctcctccagttcctcatggactatcagtctgta
aagctcatctatttcctcctggacatcatagcggttctctctcgcttagccttcaccttc
cagggagagtacctgctggtgtcacaggtggaagccaaaataggggacgccattcaggag
ataggccagctggtggactgccctggagagtatcttcaggagtttgaggaaaacttccgt
gaaagtttcaacggcgtcgctctgaagaatcttcgtgtcgcagaatccaagtttcagtcc
atccgagaaaagatctgcaacaggagccaaggcatcctgtcccagagactggacctgcag
agccgctcgttcgccaaagcctgtaaggtgctggacctgtccacctggcctcacaaccgg
gaggacctgaaggcctacggggaggaggaaatccagatgatattcaatcatctggagtcg
gttccctctgcggttcaggaggctccccaggccaggacggaggtcagggacagcctggtg
gtggagtggaaggacctgaaagcagactactacagcatgaacggctttaaagaggtcatc
agtcacatctgcaggtacaagcagcggtttcctctgctgagccgcatcgtgcaggtggtc
agagtcctgcccagctccacggtctgctgcgataagggacgcgggtctctgcacaagatg
tgtaagaacaaccgctcccgcctgactctggagcagatgaacgacctgctgaccgtcgcc
gttaacggaccgcccatcacgaactttgacgggaagcgagcgctggacagctggtttgag
gagaagtctggaagcagttattctctttcagccgaggtgttgaaccggatgtcagctgat
ccgaagtccgtcctgcacagcgtcgatgtcgacacggagttttaccccgacatgtaa
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