Scomber scombrus (Atlantic mackerel): 133982177
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Entry
133982177 CDS
T10651
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133982177 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133982177 (sf3b3)
03041 Spliceosome [BR:
ssco03041
]
133982177 (sf3b3)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133982177 (sf3b3)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133982177 (sf3b3)
Spliceosome [BR:
ssco03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133982177 (sf3b3)
Complex B
133982177 (sf3b3)
Complex C
U2 SnRNP specific factors
133982177 (sf3b3)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133982177 (sf3b3)
TFTC complex
133982177 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
133982177
NCBI-ProteinID:
XP_062277101
LinkDB
All DBs
Position
6:complement(30520809..30550558)
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AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLVNPIQGTTLDQVQLEQNEAAFSVAVCRFNNAG
DDWYVLVGVARDMILNPRSTSGGFIYTYRLTSGGEKLEFVHKTPVEDVPLAIAPFQGRAM
VGVGKLLRIYDMGKKKLLRKCENKHVPNLVSGIYTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTCPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgtacaacatcaccctgcagcgtgccactggcatcacccacgccatccatgga
aacttctcaggaaccaagatgcaggagatcgtcgtctccagggggaaaatcttggagtta
cttcgacccgatgccaacacagggaaggtgcacactctgctcacagtggaggtgtttggc
atcgtaagatctctgatggccttcagactcactggaggaaccaaagattacattgttgtt
ggaagtgacagcggccgcatcgtcatcctggaatatcatccatcaaaaaacatgtttgag
aagatccaccaggaaacatttgggaagagcggctgtcggcgcatcgtccccggacagttc
ctggccgtggacccaaaaggcagagctgtcatgatcggagcgatagagaaacagaagttg
gtttatattctgaacagagatgcagccgcaagactgaccatctcctctcctctggaagcc
cacaaagcgaacacactggtctaccacgtagtaggagtggatgtgggctttgaaaacccc
atgtttgcctgcctcgaaatggactacgaggaagctgacaatgacccgaccggagaagca
gccgctaacacacagcagacgctcaccttttacgagctggacctcggcttgaatcatgtg
gtccgcaagtacagcgaagccttggaagagcacggaaatttcctcatcactgttcctggt
ggttcagacgggcccagcggagttctgatctgctccgaaaactacatcacttacaagaat
ttcggagaccagcctgacattcgctgtccgatcccacgacgcaggaatgacctggatgac
ccggagcgtggcatgatattcgtctgctcagccacccacaaaaccaagtccatgttcttc
ttcctggcccagactgagcagggagacatctttaaggttaccctggaaacagatgaagaa
atggtcacggaaattcggctgaagtactttgacacgatccccgtggcgacggccatgtgc
gtcctgaagaccggcttcctgtttgtgtcatcagagtttggaaaccattacctgtatcag
atcgctcacctgggcgacgacgacgacgagcccgagttctcctctgcaatgcctttagaa
gagggggacaccttcttcttccagccccgccccctcaagaacctggtgctggtggacgaa
caggagaacttatcgcccatcatgtcctgccagattgctgatttggccaatgaagataca
cctcagctgtacgtggcctgtgggcgaggacccaggtctactttgagggttcttagacac
ggattggaggtttcagagatggccgtctccgagctgcccggtaaccccaacgctgtgtgg
acagtccgcagacatgtggaagatgagtttgatgcctacatcatcgtgtctttcgtcaac
gctactctggtcctgtccatcggagagactgtagaagaagtgacagattctggtttcctg
ggaacaacgcccactctctcctgctcattgctcggtgaagacgccctggttcaggtatac
ccagacggcatccgccacatcagagccgacaagcgtgttaatgagtggaagactcccggc
aaaaagacaatcgtccgctgcgctgtgaatcagcggcaagtggttatcgccctcaccgga
ggggagctggtttactttgagatggacccgtctggccagctcaatgagtacacggagcgg
aaggagatgtcagcagatgtggtgtgtatgagcctggctaacgttcctcctggtgagcag
cgatcccggttcctggctgtgggactggttgacaacactgtccgcatcatctccctggac
ccttcggactgcctacagccactgagtatgcaggccctgcccgcccagccagagagtctg
tgtatagttgagatgggaggggtcgagaaacaggacgaacttggagaaaagggaaccatc
ggcttcctctacctcaacatagggcttcagaacggtgtgcttctgaggaccgtgcttgac
ccagtaactggtgatctgtccgataccagaacaagatatctgggctcacgacctgtcaaa
ctcttcagagtcaggatgcagggacaagaagctgtgctggcaatgtccagtcgctcctgg
ctcagctactcgtatcagtctcgcttccatctgacccctctgtcatatgagactctggag
tatgcctctggttttgcctcggagcagtgcccagaaggcatagtggccatctccaccaac
acactgagaatcttggctttggagaaattaggagctgtcttcaaccaggtggcctttcct
ctgcagtacacccccaggaaatttgtgatccacccagagaccaacaacctcattttgatc
gagaccgaccacaatgcctacaccgaggccaccaaagcccagagaaagcagcagatggct
gaggagatggtggaggctgctggtgaggatgaaagagagctggctgctgagatggccgcc
gcctttctcaatgagaatctcccagaagctattttcggtgcacctaaagctggagcgggg
cagtgggcctcactggtgcgactggtcaaccccattcagggtacaacgctggaccaggtg
cagctggagcagaatgaagcagcgtttagcgttgcagtgtgtcgtttcaacaacgcagga
gatgattggtacgttctggtgggcgtggccagagacatgattctcaaccccagatcgacg
agcggcggcttcatctacacctatcgactcaccagcggcggggagaagctggagtttgtg
cacaagaccccagtagaggacgtacctttggccattgctccattccagggacgtgccatg
gtgggagttgggaaactgctgagaatctacgacatgggcaaaaagaaactgctacggaag
tgtgagaacaagcacgttcccaacctggtgtcggggatctacacgatcggccagcgtgtg
atcgtgtccgacgttcaggagagtctgttctgggtgcgttaccggcgcaatgagaaccag
ctcatcatcttcgccgacgacacatgtccccgctgggtgacgacagcctgcctgctggac
tacgacaccatggcctccgccgacaagttcgggaacatcagcattgtgcgtcttcccccc
aacaccagcgatgacgtggatgaggaccccacagggaacaaagctttatgggacagaggt
cttcttaacggagcatcacagaaggctgaggtcatagtgaactaccacgtaggagagacg
gtgttatctctccagaaaaccactctgatccctggaggttcagagtccctggtctacacc
acgctgtccggaggaatcggcatattggtcccattcacttcacatgaggaccacgacttc
ttccagcatttagagatgcacatgcgctccgagttccccccactgtgtggccgagaccac
ctcagctttagatcctactacttccccgttaagaatgtgatcgatggagatctgtgcgag
cagttcaacagcatggaccctcacaagcagaaaagcgtggccgaagagcttgatcgaacg
ccacccgaggtctctaagaaactggaggacattcgcactcgctacgccttctaa
DBGET
integrated database retrieval system
