Scomber scombrus (Atlantic mackerel): 133982185
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Entry
133982185 CDS
T10651
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
133982185 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133982185 (lrrc4ca)
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
NGL family
133982185 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
ig
Ig_3
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Ig_6
Sp38
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
133982185
NCBI-ProteinID:
XP_062277111
LinkDB
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Position
6:13392105..13394051
Genome browser
AA seq
648 aa
AA seq
DB search
MLNKMTSSQQQQMMRGPRWNRALSDPLFVLLLALQLLVVAGLVRAQTCPSACSCSNQFSK
VICTRRSLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLAVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPTHHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKVRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIETPHNDIITTTVQQKVGP
TPSAGIWESVSPTSTTTTTVRTPLSTRATEKTYTVPVTELGGEGSLNGLDEVMKTTKIII
GCFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGPGMEGHLTLPP
LEHEHLNHYNTYKTAYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaagatgacctcctctcagcagcagcagatgatgcgaggtcctaggtggaac
cgggccttgtccgaccctttgtttgtgctgctcctggccctccagctgctggtggtggca
gggttggtacgtgctcagacgtgcccctctgcctgctcctgtagtaaccagttcagcaaa
gtaatctgcacgcgccggagcctgcgagatgtccctgatggaatctctaccaacacacgc
tacctgaatctgcaggaaaatctcattcaggtcatcaaagtggacagcttcaagcaccta
agacatttagagatcctgcagctgagtaaaaaccacatacgcaaaatcgagctgggggcc
ttcaatggattggccagcctcaataccttggagctttttgataaccgcctcaccaccatc
ccaaatggagcatttgagtacctgtccaaactaaaggagctttggttgaggaataacccc
atagagagcattccttcttatgctttcaacagagtgccctcattacgacggttggacctt
ggggagctcaagcggctctcctacatatctgagggggcctttgaagggctgagcaatctg
cgctacttaaatctgggaatgtgcaatcttaaagaaattcccaatcttattcccctggtg
aagctggatgaattggaaatgtcggggaaccagctagctgtcatcaggcctggctccttt
aaagggctcatccatttacagaagctatggatgatgcatgcccagatccagaccatagaa
aggaactcttttgatgatctgcagtcactagtggagcttaatttagcccacaacaacctt
accctcttgccccatgatctgttcactcctttgcatcacctggagagggtgcacttgcac
cacaacccgtggaattgtaactgtgacatcctctggttaagttggtggcttaaggagatg
gtaccagcaaacaccagctgctgtgcccgttgcagctcaccaactcaccataaagggcga
tacattggcgagctggaccagaactactttcactgttatgctcctgttattgtggagcca
cctgctgacctaaatgtaacagagggaagtgctgcagagttgaaatgtagagccagttct
ttgacgtcagtaagctggattacacccaatggttctatcatgacacacggtgcgtacaag
gtcagaatctcagtgctgaatgatggcactctgaacttcaccaatgtcaccatgcaggac
acgggcacatacacgtgtatggtcagtaattctgcaggtaacacaaccgcatccgccacg
ctcaatgtgtcctctacggagaacagcagcttcagctacttcaccacagtgacagtagaa
accatagaaacaccacataatgacatcatcaccaccactgtgcaacagaaggtgggccca
accccgtctgctggcatatgggaatctgtttcacccacctctacaactaccacaacagtc
aggaccccactttccacccgtgccacagagaaaacttacacagtccctgtgacggagctg
ggtggggagggctcactgaatggcttggatgaagtcatgaagacaaccaagatcatcatt
ggctgctttgttgcaatcacactcatggcagctgtcatgctgatcatcttctacaagatg
cgtaagcagcaccaccagcagaatcaccatgcacccacacgcaccattgagatcatcaat
gtggatgaggattgtgtaacaggaggcccgggcatggagggccacctgacgctgcctcct
cttgagcatgagcacctcaaccactataacacttataagactgcatataaccatgcctct
actatcaactccatacacagctcagcgcacgaacctttgttaatccgggccagctcaaaa
gacaatgtacaagagacccaaatctaa
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