Scomber scombrus (Atlantic mackerel): 133982215
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Entry
133982215 CDS
T10651
Name
(RefSeq) neural-cadherin-like
KO
K27892
neural-cadherin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Cadherin related
133982215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133982215
NCBI-ProteinID:
XP_062277155
LinkDB
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Position
6:complement(11006626..11095936)
Genome browser
AA seq
2914 aa
AA seq
DB search
MIWGVLLCCLLKPAAGYQTQERLPFFHGHIFENSPTASKVNGLSIPVKRINAQKWCPVSG
MHFKLYGNGSEDFHVFFHHKRGNILLKTSRVLDREARSEYLLSVGLCCQPLLSESVVFEV
AFAKVDVLDTNDHEPTFRSADTVHITLDDTTALRSVVYRLEAVDADSGKNAELTYISHPK
NGSFYVVPKTGEVLLVDSILGLPSEVTFCIFARDHGWPPLTSKGVVVTFAPQRWATRPAE
SAGSGRAGRSPRALLDPDTPVSLNVSEDASIGSVITSLSLTRFQSAAYELIYPESESSPV
TVGRDSGDITITRRLDRETEPFLELTVKIQDKRGPDWYLNKVKLKITDVNDNVPEWNMRP
YPYLAVVSPEAPAGTFVYQLQAHDGDEDKSGEVEYFLSDGGDGCFVVDKKTGQVMTTGLV
LQRDREYLLSVVALDGLGTRSAPAMLSVVAGARAPQFTNTSFAISIPENTPEGQPFLVVF
AVSFQKQQISYSLLINPSSLFSIQQETGEISLTRTLDYESDQRRYLLMVRASEEPGSLST
ATEVQVLITDENDCVPEFLQSIYSVDGVPETVTTATSLLQVLATDCDSGLNAELTYYTLS
PDFSISPHGTIFPAGRLDYERPNHLYEFVVMAVDSGDEPHSGTATVRVRMANVNDEAPEF
SQPVYRTFVSEDAGPNTLVATVLAKDPDGDGIIYSITAGNEEGNFVIDSQKGLIRLRSTP
LPKLQGLEYVLNVTATDDNASGGPHPLSSTARVIVGVDDVNNNKPVFEECQQYREQASVL
ENQPTGTFVLQVHAADADEGANGKVKYGLMHRDSAMPAFRIHPDTGAIVTARRFDRERQR
EYSITVTATDWAEEPLIGICQLTIQILDQNDNSPKFENLRYEYFLREDTLVGTSFLRVAA
HDDDFGTNAAITYSMSVEQPEYLRVNPVTGWVYVNQPISQRSYITRDIIATDGGNRSTSV
ELAVTITDVKNQPPQWEEESYSVVIPENTARDTPIVTIRATSHLGDPRVTYNLEDGMVPE
TNMPVRFYLSPNREDGSASILVSEPLDYETTPFFSLRVRAQNVAAVPLAAFTTVYVNITD
VNDNVPFFTSSIYETSVTEGAQIGTSVLQVSAHDKDLGLNGEITYSLLSDSSGDHHLFRI
EPKLGIIYTEAVFDREARSSYLLEVQSEDGQESARPGKNKQPNTDTAYVRVFISDVNDNK
PVFAQRLYEVGVDENADVGLAVVTVSANDEDEGANAKLRYQITSGNKGGVFDIEPEVGTI
FIAQPLDYEQQKRYKLLVLASDGKWEDYAAVVVTVVNKNDETPVFSMNEYYGSVTEELDG
SPVFVLQVTATDPDKDADQGAIRYSIHGQGAESHFMINDITGEMYAQRTVDREERAVWRF
VVMATDEEGEGLTGFTDVIINVWDINDNAPTFSCAPDNCHSSVAENSPPGTFVVEMTAVD
LDDAAVGQNAILTYRITENAHNTNNAELFTIDSSTGTISVAADGLDREITDSHRLVVEAR
DGGGMTGTATATIVVTDINDHLPKFREDWCGARVPESTDVDASILELSAVDPDAGTYGQL
AFSVVAGDLEQRFYMVSHRLEQTGTLRLKKKLDFEKPGEQRFNLTVRVEDSDFSSLIHCL
ILVEDENDNAPVFVPSSHFLSPLPEDVTVGSSVIQVVATDSDSGLNGDILYSILPQSDPY
GHFTVSRGGTVTVAKPLDRETVAGYELVVMATDQGTPARTGSVMVHLPLLDMNDNGPELE
TVYTPVLWENSPAPQVVCLNRSSTLLHVVDRDSPEHGPPFFLSLPSLYSIDFHLQDHGNG
SATLTALRRFDRERQRQFYLPVIMIDSGDPPMTATSTLTITIGDQNDNAHQEGEKDVYVQ
SRKGRMANAPMGKVYAPDPDEWDNKTYTLETSAAKYFSLNQSSGVLTIRQSPPAGSYWLR
IRVSDGVWPDVMSGVRVHVRDLEEKAVLSSASLRLTGITAKDFIDSHVEGMSRLEMFWDF
LSKTLSVRLGSINIFSITDRDEKTVDIYFYVLTDTGYLHSEKLHGVIAAHKKKLQSLLRV
NVSQVQVDECVHIDCKASGGCSTQLSISDSPTLVDAGALSLVSVKVISTAVCGCAAREMT
HQPCSSYPSNPCLNGGTCVDTQNGYRCHCPPQFEGPDCQQMRISFLGNGYAWFPPIRPCF
DNHLSLEFMTEEDDGLLLYAGPLATLLPGDAEDYMAIELIGGTPSLKINHGSGTLVLQLT
NNAGVADRRWHRLDVRSNSKEVRFTLDRCSSAIVMETEGVDSWAMTEDRSSCEIRGVTPN
RDKYLNRSLVLQLGGVNENTSYEYPQLQHKHYAGCIRNLLVDSKLYDLGSPAESSNTVPD
CSLIDDHCTNVEQLRPCGKRGRCHGEWGSFSCLCEPGFTGPQCDQVAPEFSFDGRSHIQF
QLLWSLPARQTRVQVGLRTRAVTGVILSLLSQEQNEYLRLEVIQGLLAVFYNLGDGEYNL
TLPFQRLDDGEWHEVEVDRYGKEFTLRLDGGGGRREITASPGQSQEIIIDPSVVMLGNSF
PSGHNRSFIGCLRDLRFYGRTIPLDWEQSSEGLQVVSSQGVSVGCSSEACKKHHCSPPLV
CVDLWRHHECRCPPGHMTKESSLGKVCVYTLCASRPCRHGTCVAHSPSRYSCHCSEGYRG
RHCEVSLAMFHNEDSNSLSLSSMFAITICVLAFLVLMLGLFLYSCWRRHKGLKEGVYHVS
AHHGEWEDIRENVLNYDEEGGGEQDQNAFNMVELQRSLQPSPAQSLRYSYPQSIISYPQT
KLPQDNNKKGMSNGNGSAAIALRLAIPPSETETLPSPLTFRRSQKSLSFSSQDLARYLCE
VIRDMEHPGDLGTMTTPRRPSGKERGLAAVRSLSSLSASQGSEVRLQGGQSSRLDRFKTL
RAVLSDLRGDSKTPEGQRDKLKESRGQLNCEKSG
NT seq
8745 nt
NT seq
+upstream
nt +downstream
nt
atgatttggggtgttttgttatgctgccttctcaaaccggctgctggatatcaaacacag
gagcgattgcctttttttcacgggcatatttttgagaactcaccgacggcttccaaagta
aacggactgagcattccggtgaagcgcatcaacgcgcaaaaatggtgcccagtctctggg
atgcacttcaaactgtacggaaacggcagcgaagatttccacgttttcttccaccacaag
cgggggaatatattgctaaaaacttccagggttttagacagagaagctcgctcagaatac
ctgctgagcgtcggtctgtgttgccagcccctactgtcggagtccgtcgttttcgaggtt
gcgtttgcaaaagtggacgttttggacaccaacgatcacgaacccacttttcgcagtgca
gacaccgtccacataactttagatgacaccacagctctccgtagtgtggtttacaggcta
gaggctgttgacgcagatagcggcaagaacgcagagttgacatacatttcacaccccaaa
aatggcagtttctatgttgtcccgaaaacaggcgaagttttgctggttgactctatcctg
gggctcccgtctgaagtcacattctgtatttttgctagagaccacgggtggccccctctt
accagtaaaggtgtagtggttacgtttgctccacagcggtgggcaacgcgtcctgctgaa
tcagcggggtcaggaagggcaggtcggtcaccgagggcactccttgaccctgacaccccg
gtctccctcaacgtgtctgaagatgccagcattggctcggtcataacgagcctgagtctc
accaggtttcagtcggcagcctacgagttgatttacccggagtcagaaagctctccagtc
accgtggggcgcgacagtggagatatcacgataaccaggaggctggatagggagacagag
cctttcctggagctcactgttaagattcaggacaaacgaggcccagactggtacctgaac
aaggtgaagttgaagatcactgatgtcaatgacaacgtccctgagtggaatatgaggccg
tacccttacctcgccgtagtgtcccctgaggcacctgctggaacgtttgtgtaccagctc
caggctcacgatggggatgaggacaaaagcggagaggtggagtactttttgtcggatggc
ggtgatggctgctttgtagtggacaagaagacaggccaggtgatgaccacggggctggtg
ctccagcgggacagagagtacctgttaagcgtggtagcccttgacggcttgggcacccgc
agtgctcctgccatgctctctgttgtggcaggagccagagcaccacagttcaccaatacg
agctttgccatctccataccagagaacacacctgaagggcagcccttcttggtggtgttt
gctgtttccttccaaaagcagcaaatcagctacagtctgctgatcaatcccagtagcctt
ttcagcattcagcaggagacaggggagatcagtctgacccggacgctagattatgagagt
gaccagaggcgctacctgctgatggtgcgagccagcgaggagcccggcagcctgagcact
gccacagaggttcaggtgttgataacggatgagaatgattgtgtcccagagtttctccaa
tccatctacagtgtggatggagtccctgagactgtaaccacggcaacatccctgctgcag
gtgctggccacggactgtgactccgggttaaatgctgagctcacctattacaccctgagc
ccagacttcagcatttccccccatgggaccatattccctgcaggccgactggactatgag
aggcctaaccatctgtatgaatttgtggtgatggcagtggacagcggagacgagccgcac
tctggcactgccacggtccgtgtaaggatggcaaatgtcaacgatgaagccccagagttc
tcccagcctgtatatcgaacgtttgtttccgaggatgcgggccctaacaccctcgtcgcc
acagtcctggccaaagacccagatggtgatggtataatctactccataacagccggcaat
gaggagggaaacttcgtcattgacagccagaaagggttgattcgtctccgctccactccc
ctgcccaagcttcaaggcctggagtacgtcttgaatgtaacggccacagatgacaacgca
tcaggcgggccacaccccctctcctccactgcccgcgtcatagttggggttgatgatgtc
aacaacaacaaacctgtatttgaagagtgccagcaatatcgtgagcaggcttcagtgctg
gagaaccagccaacggggacttttgtgttgcaagtgcatgctgcggatgcagatgaggga
gcaaatggaaaagtcaaatatggcttaatgcacagagacagtgcgatgcctgccttcaga
attcatccagacacaggagcgattgtgacagcccggcggttcgacagggagcggcagaga
gagtattcaattacagtaacggccactgattgggcggaggagcccctcatcggcatctgc
cagctcaccattcaaatactggaccagaatgataatagccccaagtttgagaatttgcgc
tatgagtacttcctgagagaagacactttggtcggcaccagtttcctgcgtgtggcagct
cacgatgacgactttggcacgaatgcagctatcacttactccatgtctgtggagcagcct
gagtacctgagggtgaaccctgtcactggatgggtgtatgttaaccagcccatatcgcag
aggagctatattacgagggacatcatagcaaccgatggagggaaccggagcacttctgtg
gagctggcagtcaccatcaccgatgtgaaaaaccagcctccacagtgggaagaggagagc
tacagtgtggtcatccctgagaacaccgccagggacacacctatagtgacaatcagggca
acctctcacctgggagacccgagggtgacctacaacctagaggatgggatggtccccgaa
accaacatgccggttcgtttctacctctcccccaaccgggaagatggctctgcttccatc
ctggtgtctgagccactggactacgagaccaccccctttttctctctcagggtgcgagca
cagaatgtggctgcagtgcctcttgcagctttcaccactgtttatgtcaatattacagac
gtcaatgacaacgtgccatttttcacctcttccatctacgagacctctgtaacagaagga
gcccagatagggacctcggttctccaagtgtctgctcatgacaaagatctgggtcttaac
ggagagatcacttactctctgctgagtgatagcagtggtgaccaccatctgttccgaata
gaaccaaaacttggaatcatctacacagaagctgtgtttgatcgtgaggctcgcagctcc
tatttgctggaggtgcaatcagaagatggccaggaatcagctcggcctggcaagaacaaa
cagcccaacacagacacagcatatgtgcgggttttcatcagcgacgtcaacgacaacaaa
ccagtctttgctcagcgactgtatgaagttggtgtcgacgagaatgcagatgtgggcctg
gctgttgtcacagttagtgctaatgacgaggatgaaggggccaatgccaagctacggtac
cagataacatctggcaacaagggtggtgtttttgacatagagccagaggtggggacaatc
tttattgcacagccactggactatgagcagcagaagaggtacaaactactggtcctcgcc
tctgatgggaaatgggaagactatgcagccgtggtggttactgtagttaataagaatgat
gagacaccggtgttctccatgaatgaatactatggatcagtcacagaggagcttgacggg
tcacctgtgtttgtactgcaggtgaccgccactgacccagacaaagatgcagaccagggt
gccatacggtattccattcatggccaaggagcagagtctcacttcatgatcaacgacatc
acgggggagatgtatgcccagcgcactgtggaccgagaagagcgtgctgtctggcgcttt
gttgttatggcaacagatgaggagggagagggacttactggcttcactgatgttattatc
aacgtgtgggacatcaatgacaatgcacccaccttctcgtgtgcgcctgataattgccac
agtagcgtggcggaaaactcccctcctggaacgtttgtagtggaaatgacagcagtagac
cttgacgatgcagcagtaggtcagaatgcaatcctcacttaccggattactgaaaatgca
cacaatacaaacaatgcagaactttttactattgattccagcactggaaccatttctgtg
gcagcagacggtttggaccgggagattactgacagccaccggctggtagttgaggcccgg
gatggtggtggtatgacaggtacagcgactgccactatagttgtaacagacatcaacgac
cacttgccaaagtttagagaggactggtgtggtgctcgtgtgcctgagagcactgatgta
gatgcctccattttggagttgagcgctgtggaccctgacgctggcacctatggacagctg
gccttcagtgtggtggcaggagacctggagcagagattctacatggtaagccacagactg
gagcagacgggcactctgagactgaagaagaagctggactttgaaaagccaggggagcag
cgttttaaccttactgtaagggtggaagattctgacttctccagccttatccactgtctg
attttagtggaggatgagaatgataatgcccctgtgtttgtcccgagctcccactttctg
tcccctttgcctgaggacgtaaccgtaggaagcagtgtcattcaggtcgtggcaactgac
tctgactcggggttgaatggtgacattttatacagcattcttcctcagtctgatccatat
ggacattttacagttagccgaggcggtacggttacagtcgccaaaccactggatagggag
acagtggcaggttatgagttggtcgtcatggcgacagaccagggtaccccagcacggact
ggcagtgtcatggtccacttgccgctgctggacatgaatgacaacgggccagagctggag
acagtctacactcctgtgctgtgggagaacagtccagcacctcaggtggtctgtcttaac
aggagctcaactctgcttcatgttgtagacagagactccccagagcatgggcctcctttc
tttctctccctgccctcactctactcaatcgacttccacctacaggatcatgggaacggc
tctgccacactcactgccctccggagattcgacagagaaaggcaaagacagttctattta
ccagtgattatgattgacagcggtgatccgccaatgacggccacaagcacactcaccatc
accattggtgaccagaatgataatgcccatcaggaaggagagaaagatgtctatgtgcaa
agccgcaagggaaggatggcaaatgcgccaatggggaaggtatatgccccagatcctgat
gagtgggacaacaagacctacactctggagacaagtgcagccaaatacttcagcctgaat
cagagctcaggagtgctgaccatccgacagagccctccagcagggagctattggttgagg
atcagggtgtctgatggggtgtggcctgatgtgatgtctggggtcagagttcatgtcaga
gatctggaggaaaaggctgtcctgtcatctgcctcgctgcgcttgactggcattacagcg
aaagattttatcgactctcacgtcgaggggatgagtcggctggagatgttctgggacttc
ctgtctaaaaccctgtccgtcagactggggagtatcaacattttcagcataacagacaga
gatgaaaaaactgtggacatctacttctatgtgctaaccgatactggctacctgcactca
gagaaattacatggtgtcattgcggcgcataaaaagaagcttcagtcactgctgcgtgtg
aatgtgagccaggtgcaggtagatgagtgtgtgcacatagactgtaaggcatctggcggg
tgctccacgcagttaagcatcagtgactcgcccaccctggtggatgcaggtgctttgtcc
ctggtctcagtaaaggtgatctccacggctgtgtgtggctgcgctgcccgcgaaatgacc
caccaaccctgctcctcataccccagtaacccatgcctcaatggaggaacctgtgtcgac
acccagaatggatacaggtgccactgccccccacagtttgaggggccagactgtcagcag
atgagaattagtttccttggcaacggctatgcctggtttcctcccataaggccatgcttt
gataaccatctttcactggagtttatgacagaggaagacgacggactgctactgtatgct
ggcccattggccactctgctgcctggggacgctgaggactacatggccatagagctgatt
ggtgggactcccagtctgaaaattaaccatggttctgggaccctggtcctccagttaaca
aataacgctggggtcgccgacagacgctggcatcgacttgatgtcaggagcaacagtaaa
gaggtgcgcttcactctcgatcgatgttccagtgcaattgtcatggagacagaaggcgtg
gactcatgggcaatgacagaggaccgttcatcctgtgaaatccgaggggtcacacccaac
agggacaagtatctgaacagaagtcttgtgttgcagctcggaggggtcaatgagaacaca
tcatacgaatacccacagctgcagcacaaacattatgctggatgtataaggaacctgctt
gtggacagcaagctatatgaccttggttccccagctgaatcctccaacactgtaccagac
tgttctcttattgatgatcactgcaccaacgtggagcaacttcgtccctgtggcaagagg
gggcgctgtcacggtgaatggggttctttcagctgcctgtgtgaaccagggtttacaggg
ccacagtgtgaccaagttgctccagagttctcctttgatggacggagccacattcagttc
cagctcttatggtcccttccagcacggcagacaagagtccaggttgggctacgaacacgt
gctgtcaccggtgtgatcctcagccttctttcccaggagcagaatgaatatttacgctta
gaggttattcagggtctgctggctgttttctacaaccttggagatggagagtacaacctg
acgctgccattccaacgcctggatgatggagagtggcacgaggtggaggtggatcgctac
ggcaaagaattcaccctgcgactggacggaggtggaggacgacgggaaattacggcctca
cctgggcagagtcaggagattattattgacccctctgtggtgatgcttggaaactctttt
ccctcaggacacaaccggagcttcattggctgtttgcgagatctgaggttttatggccgc
accattcccctggattgggagcagtcatcagaggggcttcaggtggtctcctcccagggt
gtctccgtcggctgctcttcagaggcctgcaagaaacatcactgctcccctcctctggtc
tgtgtagacctctggagacaccacgagtgcaggtgccctccaggccacatgaccaaagag
agctccttgggcaaagtgtgtgtctacacactgtgcgcaagccggccgtgccgccatggc
acatgtgtggctcactctccttcccgctactcgtgccactgcagcgagggctaccgggga
cgacactgtgaggtgtcactcgccatgtttcataacgaggacagcaacagcctcagcctc
agctccatgtttgccatcaccatctgtgtcttggcctttctagtgttgatgctgggcctg
tttctatactcctgctggcggagacacaagggcctaaaggagggtgtgtaccatgtgtct
gcgcaccatggcgagtgggaggacatccgagaaaatgtgctcaactacgacgaggagggt
ggaggggagcaggaccagaatgcctttaatatggtggagctgcagcgctccctccagcct
agcccggcacagtcacttcgatacagctatccacaaagcatcatctcctacccgcagact
aagcttccccaggacaacaacaagaaggggatgtctaatgggaacggcagcgcagccatc
gccctgcgtctggccatccccccctcagagactgaaaccctgccgtcccctctgaccttc
cgccgctcccagaaatctttgtccttctccagccaggacttggcccgctacctgtgtgag
gtcatcagggacatggagcacccaggggatctcggtaccatgaccacaccacgccgtccc
tctggaaaggaacgtggcctggcagcggtgcgctccctaagctccctcagtgcatctcag
ggttcagaagtcaggcttcaggggggccagagcagccggctggacaggttcaaaaccctc
cgagctgtgcttagcgatttgagaggagactccaagaccccggagggccaaagagacaaa
ctgaaggagagcagagggcagctgaactgtgagaagagtgggtga
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integrated database retrieval system
