Scomber scombrus (Atlantic mackerel): 133982251
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Entry
133982251 CDS
T10651
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc
KO
K10357
myosin V
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
133982251 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133982251 (myo5c)
04131 Membrane trafficking [BR:
ssco04131
]
133982251 (myo5c)
03029 Mitochondrial biogenesis [BR:
ssco03029
]
133982251 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133982251 (myo5c)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
133982251 (myo5c)
mRNA cycle factors
P-body specific factors
133982251 (myo5c)
Membrane trafficking [BR:
ssco04131
]
Others
Actin-binding proteins
Myosins
133982251 (myo5c)
Mitochondrial biogenesis [BR:
ssco03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
133982251 (myo5c)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
133982251 (myo5c)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
CCDC89
AAA_22
AAA_16
Myosin_N
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
133982251
NCBI-ProteinID:
XP_062277204
LinkDB
All DBs
Position
6:23852890..23864668
Genome browser
AA seq
1742 aa
AA seq
DB search
MALLELYTEFNRVWIPDAEHVWISAEIMRDFHFGDNTLELLLEDGTEHYYPIEPSKPQLP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFVESRIIYTYCGIILVAVNPYKQLPIYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNKNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSGSKTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDRRHRIIGANMR
TYLLEKSRVVFQADNERNYHIFYQMCSCAQLPEFENLRLLRADEFRYTCLGGEIAIEGID
DKKEMEETQRTFSLLGLKEDFQSDVFKVLAAILHLGNVEIKNSGDDKSSVPSSDPHLAVF
CELLGVSAAGLVRWLCHRRIVLVVETVVKPVPKHRAVNARDALAKQIYAHLFDCIINRIN
TALQVPGKQHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDQSWLQKLYNYLDGNPLFEKP
RLSNEAFVIQHFADKVEYQCKGFLEKNRDALYEELIDIMRASKFPFLANFFQEEEQNPLS
FKGVKVRAARPGVKPTNKQQRSSVGDKFCNSLSLLMETLNATTPHYVRCIKPNDEKLPFE
YDSRRVVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYSILMTHQEAGLNDKKQTCKDV
LQRLIHDSNQYKFGRTKIFFRAGQVAYLEKLRLDRLRGACVTIQKHVRGWSQRRKFMRMR
QAAIIIQQYIRGKRTIRKTVSAATLKQGWATLVIQRYWRGYRMRQIYKVVRVASITIQAF
TRGWMARKCYKKMMEEQKALVLQKYARAWLARRRFQTMRRLVINVQLSFRVQQLRKKIDE
QNKENRGLMERLTSLRNSHSQTVDKLQGLEAQLEKSYNQKASLEAREKKGKEDASVAIAQ
LQSGIHALTLEKQNLEKKFEASTKEAKESFDQIKMNLLEEKENEARLRNIAENNIEIQRQ
DHEKEVETLKDEIKKLKEERVSLRRKMEEGGQVNSDLQEQVIQLSKHVKVIPELRRDLNN
LQNQNNNMDRKMKEQSEQARAKMKEITRHLLGGVVEQEVLLGLTQDDSEKMCEVEDFLTV
FDDVQKATRILENHQREQRESYETQVEGLKLKVDHIQNENSKLQNLFQEKSNVNEKILQE
VSRLRSENSILPELKLQVSELQRQKQELEVHVEEQNRELVEKTEEITNVLQQKIKEENSQ
RRHFEEKAEVLEELKRDLQGNVEELQEENDHLRRQNMMESEAKSRLRQEASQLSAENMDF
EEQLDHKDRLIKKLQNQIKSLETSHKAKHTSTPATPKDYLGMLEYKRVDESKLIQNIILD
LKPKGVVVNMIPGLPAYILFMCVRHADYLNDDAKLKSLMNAIIIAIKKVIMTYHKDFELL
SFWLSNTYQMLNCLKQYSGEEEFMKQSTPRQKKNCLQNFDLSEHRQILSDLAIHVYHQFI
TIMEKTLTPAIVPGMLEHESLQGISSMKPTGFRKRSNSVYEDSEAYTISFIVQQLSHFHS
TMSQHGMEQGLVKQVIKQLFFLIGAVTLNNIMLRKDMCSCRKGMQIRCNISYLEEWLKEK
DLQSTNAIDTLKPLSQAAWLLQVNKSTDDDAKEITEKCTELNPVQIVKILNSYTPIDDFE
KRVASSFVRKVQSLLQDRDGSTQLMLDTDYRFQVMFPFCSSSQTLELLQLPGSLHLGFLT
RI
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggctttattggaactgtacacagagttcaacagggtgtggatcccagatgcagaacat
gtgtggatatcagcagagattatgagagacttccactttggggataatactcttgaattg
ctactggaagatggcactgagcactactatcccattgaaccgtcaaaaccacaactccct
cctctccgcaacccggacatcttggtgggggagaatgacctcacagctctcagctacctg
catgaacctgcagtcctgcacaatctcaaagtgcgattcgtggagtccagaatcatctat
acctactgtggtattatactggtggctgtaaatccctacaaacagctccctatctatgga
gatgcaatcattcatgcgtactcgggccagaacatgggagacatggaccctcacatattt
gcagtggcggaggaggcctacaaacagatggccagaaacaacaagaaccagtccatcatt
gtcagtggtgaatctggagctggtaaaacagtgtctgctcggtatgcaatgagatacttt
gctgttgtgagcaagtctggcagtaagactcgagttgaggacaaagtcctggcatccaat
ccaataacagaggcaataggaaacgcaaagacaaccaggaatgacaacagcagccgtttt
gggaaatacaccgagatcagctttgacaggaggcaccggattattggtgcaaatatgagg
acttacctgttagagaaatccagagtcgtttttcaggcagacaacgagaggaattaccac
attttctaccagatgtgctcctgtgcacagctgccagagttcgagaacctaagactgttg
agggcagatgagtttcggtacacctgcttgggtggtgagatcgctatcgaaggcatagat
gacaagaaagagatggaagagactcaacggaccttctcgctgctggggctgaaggaagac
ttccagtctgatgtctttaaagttttggcagccattctacatttgggtaatgtggagatc
aagaactctggagatgacaaatcatcagttccttccagtgatccacacctggcagtcttc
tgtgagttgttgggtgtgagcgcagcggggttggtgcgttggctgtgccatcggaggatt
gttctggtggttgagacggtggtgaagccagttcccaaacaccgggcggtaaacgccaga
gatgccctcgccaagcagatctacgctcacctgttcgactgtattatcaacaggataaac
acagcgctgcaggtcccaggaaagcaacatgctttcataggtgttctggacatttatggc
tttgaaacctttgacatcaacagctttgagcagttttgtatcaactatgcaaatgaaaag
cttcaacagcagtttaacctgcatgtgttcaagctggaacaagaggagtacatgaaagaa
gacatcccatggacgctgatagatttctatgacaatcaacccgtcatcgacttgatcgaa
gcaaagatggggatcctggacttgcttgatgaagaatgtttgtttcctcaaggcactgat
caaagctggctgcaaaagctgtacaactacctagacggcaatcctctgtttgagaaaccc
aggttatcaaatgaggcgtttgtgatacaacactttgcagacaaggtggagtatcaatgc
aaaggttttcttgagaagaaccgagatgctctctatgaagaactgattgacattatgagg
gccagtaagtttccttttctggccaactttttccaagaggaggagcaaaaccctctgagc
tttaaaggtgtcaaggtgagggctgcaaggccgggagtgaaaccaaccaataaacagcag
agaagctctgttggagataagttctgcaactccctctccttactgatggaaacgctgaat
gctaccacccctcactacgttcgctgcattaagcctaacgatgaaaagctcccgtttgaa
tatgactccaggagggtggtgcagcagctacgagcctgtggagtccttgaaactattcgt
atcagtgctcagagctacccatccaggtggacatacattgagttttacagccgatacagt
atcctaatgactcatcaggaggcaggcctcaatgacaagaagcaaacctgcaaggatgtg
ctgcagaggttgattcatgactccaaccagtacaagtttggtcgtacaaagatcttcttc
cgagctggtcaggtagcttatctagagaagctacgtctggaccgactcagaggagcctgc
gtaaccatccagaaacacgtccgcgggtggagccagaggaggaagttcatgcgcatgaga
caggcagccatcatcatccaacagtacatccgagggaagaggacaatacgtaaaacagtg
agcgctgcaacactgaagcagggctgggctacacttgtgatccagagatattggagaggt
taccgtatgagacagatctataaggtagtccgcgtggcctccatcaccatccaggctttc
acacgaggttggatggcccgtaaatgctacaagaagatgatggaggagcagaaagctttg
gttttacagaagtatgccagagcatggctggcacggcggcgatttcaaaccatgcgtcgc
ctggtgattaatgttcagctttccttcagggttcaacagctcagaaagaagattgacgag
cagaataaagagaaccgtgggttgatggaaagactgacaagcttgcgcaactcccattct
caaaccgtggacaaacttcagggtctggaggcacagctggaaaaatcatacaaccagaag
gcgtctttggaagcaagagagaagaaagggaaagaagatgctagtgtggcaatcgcccag
cttcaaagtgggatacatgcactaacccttgaaaagcagaacttggagaaaaagtttgaa
gcttccaccaaagaagcaaaagagagcttcgatcaaataaagatgaatcttctagaagag
aaagaaaatgaagcaagacttagaaatatcgcagagaacaacattgagatccagaggcag
gaccacgagaaagaggtggagactctgaaagatgagataaagaaattgaaagaagagaga
gtgagtctgcggagaaagatggaggaggggggccaggtgaactctgacctgcaggaacag
gtcatccagctcagcaagcatgtcaaggttattccagaactacgcagagatctgaataat
ctgcaaaatcagaataataacatggaccgtaagatgaaggaacagtcagaacaagcaaga
gctaaaatgaaggagataacgagacaccttctcggcggtgttgttgaacaggaagttctt
ttggggttaactcaagacgactctgagaagatgtgtgaagttgaagattttctgacagta
tttgatgacgtgcagaaagctaccagaatactggaaaaccaccagagggagcaaagggaa
agctatgagacccaagtggagggcttaaaattaaaagtggaccatattcaaaatgagaac
agcaagctgcaaaacctgttccaggagaaaagtaatgtcaatgagaaaatactccaagag
gtgtccaggctgaggagcgagaactcgattctacctgagctgaaactgcaggtttcagag
ctgcaaagacaaaaacaagagcttgaggtccatgtagaggagcagaacagagagttagtg
gaaaaaacagaagagatcaccaacgtccttcagcagaagattaaagaagagaattcacag
cgcaggcactttgaggagaaagctgaagtgctggaggaactgaagagggaccttcaaggc
aacgtagaggagctgcaagaggagaatgatcacttgagaagacagaacatgatggaaagc
gaggctaagagcagactgagacaagaggcttcacagttatctgctgagaatatggacttt
gaagagcagctcgaccacaaggacagattaataaagaaactccagaatcaaataaagagt
cttgaaacatctcacaaagccaaacatacgtctacgcctgctactcccaaagattacctc
ggcatgttggagtacaagagagtggatgaatccaagctcattcagaacatcattctggat
ctgaagcctaaaggtgtggtggtcaacatgatcccgggtctgccagcttacatcctcttc
atgtgtgtccgccatgccgactacctgaacgatgacgccaaactcaaatctcttatgaat
gcaattataattgctatcaaaaaggtcatcatgacttaccacaaagactttgagttactg
tcgttctggctgtccaacacgtaccagatgctcaactgtctgaagcagtacagcggggaa
gaggagttcatgaaacaaagtactcctcgtcagaagaagaactgcttgcagaatttcgat
ttgtccgaacaccggcagattctcagcgacctcgccatccacgtctaccaccagtttatc
actatcatggaaaaaaccctcactcctgccatcgtacccggcatgctggagcacgagagt
ctacaagggatttccagcatgaagccaacaggattcaggaagcgttccaacagcgtctac
gaggactcagaggcctacaccatctccttcatcgttcagcagctcagtcactttcactcc
accatgagccagcacggcatggagcaaggtctcgtcaaacaggttatcaagcagctgttc
ttcctcatcggtgcagtcaccctcaacaatatcatgctccgcaaagacatgtgctcctgc
aggaaagggatgcagatcagatgtaacatcagttacctggaggaatggctgaaggagaag
gaccttcaaagcactaacgccatagatactctaaagccgttgtctcaggctgcttggctc
ctgcaagtcaacaagtccactgatgatgacgccaaggagatcacagaaaaatgcactgaa
ctcaaccccgttcagattgtcaagattttgaattcgtacacacccatcgatgacttcgag
aaacgggtggcttcatcatttgtccgcaaagttcagtcacttctacaagatcgtgacggg
tccacacagctgatgctggacacagattatcgtttccaggtcatgtttcctttctgctca
tcctcgcagactctggagctgctgcagctcccgggcagccttcatctgggcttcctcacc
agaatctga
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integrated database retrieval system
