Scomber scombrus (Atlantic mackerel): 133982508
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Entry
133982508 CDS
T10651
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2
KO
K10140
DNA damage-binding protein 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03420
Nucleotide excision repair
ssco04115
p53 signaling pathway
ssco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133982508 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
133982508 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
133982508 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
133982508 (ddb2)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133982508 (ddb2)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
133982508 (ddb2)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
133982508 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_EML_2
WD40
Beta-prop_RIG_2nd
WDR55
EIF3I
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
133982508
NCBI-ProteinID:
XP_062277548
LinkDB
All DBs
Position
6:complement(24624692..24629993)
Genome browser
AA seq
496 aa
AA seq
DB search
MKTKGRTADASESKRKAKNSGPTLSKKLRDKKNGETSKPGPPLKSAGPPLKSAGVQRRGG
HGSILHYIYKSTLGQSLHSQMRQCLQEPFVRSLSSYHFHGATSPFDRRITCLEWHPTHPT
TLAVASKGGDMFLWDYEMPAKQTFIQGNGAGDFIGGMKFCPTDLSRVYVASGEGRLTVQS
FDGRTPTVLSTTQDCGHDHHNVCYWYCCVDVSVSRQMLVTGDNTGQLSLLGLDGQKIFSE
KLHKAKVTHAEFNTRCDWLLVTASVDHTVKLWDLRNIKDKKSFLHDMPHEKAVNSAYFNP
VDCSKLLTTDQYDQIRVYSSSDWSKPQQIIQHPHRQFQHLTPIKATWHPVYDLIVVGRYP
DYRVCTGDQKTVDIYDSNTAELVCQLQDPSASGIKSINKFNPMGDVIGCGMGVTALVWDR
NESLIGDGDELQEETSVSVDSLRSKRRGQQRPARNRRGPAVDVKLMKKLASLEESETKTK
TKTGCTKQKQAQMRKK
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccaaagggaggacagcagatgcgtctgaatcaaagagaaaagcgaagaactct
ggtccaactctctccaaaaaactacgagacaagaaaaatggagaaacatccaaaccaggg
cctcctctgaagtctgcagggcctcctctgaagtctgcaggagtccagaggagaggaggg
catggcagcatcctgcactacatttacaaaagcactctgggacaaagtcttcactctcag
atgagacagtgtctccaggagcctttcgttcgctccttgtcatcctatcatttccacgga
gccaccagtcccttcgaccgcagaatcacctgtctggagtggcatcccactcaccccacc
acgctggctgtggcatccaaaggtggagacatgtttctgtgggactacgagatgccagca
aagcagacttttattcaagggaacggagccggggactttatcggggggatgaagttttgc
cctacggacctctctagagtctatgtggcatctggcgagggcagattgaccgtgcagagc
tttgatggccgcactcccaccgttctgtccacaactcaagattgtggccacgatcaccac
aatgtttgttactggtactgctgtgtagacgtgtctgtgagccgacagatgcttgtaaca
ggagacaatacgggacagctctcactcctgggtttggatggccaaaagattttcagtgaa
aagttgcacaaagccaaagtgacccacgcagagttcaacacccgttgtgattggttactg
gtgacggcctcagtcgaccacacagtgaagctttgggacttgaggaacattaaagataag
aagagcttcctccatgacatgcctcatgagaaagctgtcaactcagcttattttaatcca
gtggactgctccaagttgctcacaacagatcaatacgaccagatccgggtctactcgtcc
tcagattggtcgaagcctcaacagatcatccaacatccacacagacagtttcagcatctc
acacccatcaaggctacatggcatcctgtgtatgaccttattgtggtgggccgttaccca
gactaccgggtttgcaccggtgatcagaagaccgttgacatctatgactccaacacagca
gagcttgtgtgtcagctgcaagatccgagcgcttcaggaatcaaatctatcaacaaattc
aatccaatgggtgatgtgattggatgcggaatgggtgtaacggcgctcgtttgggataga
aacgagtcattgattggcgatggagatgaactgcaggaggaaacctctgtgtcagtggac
agtttgagaagcaagcggaggggtcagcagcggcccgccaggaacaggagaggccctgct
gtggatgtaaagctcatgaaaaaactggcttctctggaagaatcagagaccaaaactaag
accaagactgggtgtactaaacaaaaacaagcccagatgaggaaaaagtga
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