Scomber scombrus (Atlantic mackerel): 133982889
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Entry
133982889 CDS
T10651
Symbol
vars1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
133982889 (vars1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ssco01007
]
133982889 (vars1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssco03016
]
133982889 (vars1)
Enzymes [BR:
ssco01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
133982889 (vars1)
Amino acid related enzymes [BR:
ssco01007
]
Aminoacyl-tRNA synthetase
Class I (U)
133982889 (vars1)
Transfer RNA biogenesis [BR:
ssco03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
133982889 (vars1)
Prokaryotic type
133982889 (vars1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
Val_tRNA-synt_C
Arc1p_N_like
GST_C_2
GST_C_3
tRNA-synt_1e
Jag_N
GST_C_7
Motif
Other DBs
NCBI-GeneID:
133982889
NCBI-ProteinID:
XP_062277731
LinkDB
All DBs
Position
7:20279302..20291195
Genome browser
AA seq
1277 aa
AA seq
DB search
MATLYVSPHPDDFRSLLALVAAEFCPSSRPRTITEDPPVSLNARSRPTLVLAAGDGDSVL
SGASAVAWYLASQGKKTGVDAKQQSQVWQWISFADNEITPVSCAVVFPLMGMIGVDKKLQ
QSSRTELLRVLKALDHALEPRTFLVGESITLADMAVAAAVLLPFKYVLEPSDKKVLTNVT
RWFTTCINQPQFLKVLGKITLCEKMVPVTPKTNAAENAKAANASPAADSAGATANGPPKT
EAQLKKEAKKREKLEKFQQKKEMEAKKKTQPPAEKKAKPEKKELGVIAYNAPTPAGEKKD
TISPLPDSYSPQYVEAAWYPWWEKQGYFKPEFGRKSISEQNPRGVFMMCIPPPNVTGSLH
LGHALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLMREKGMSRHDLGREN
FIQEVWKWKNEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSYAVQEAFIRMHEEGVIYRS
KRLVNWSCTLNSAISDIEVDKKELTGRTLLPVPGYKEKVEFGVLVSFAYKVDGSDEEVIV
ATTRIETMLGDTAVAVHPADSRYQHLKGKMVLHPFSDRKMPIVFDDFVDMNFGTGAVKIT
PAHDHNDYEVGERHNLAFINILDENGLLINVPPPFLGMKRFEARKAVLQALKDRGQFKEI
KDNPMVVPVCSRSKDIVEPLLKPQWYVNCTDMGKQAADAVREGQLKIIPDHHLKTWFNWM
DNIRDWCISRQLWWGHRIPAYFVTVNDPSVKAGEDMDGHYWVSGRSEEEAREKAAKRFNV
SADKITLRQDEDVLDTWFSSGIFPFSIFGWPNETQDLNVFYPGTLLETGHDILFFWVARM
VMMGLKLTGKLPFKEVYLHAVVRDAHGRKMSKSLGNVIDPLDVITGISIEGLHAQLIDSN
LDPLEVEKAKQGQKSDYPNGIPECGTDALRFALCAYTGQGRDINLDVNRILGYRHFCNKL
WNAVKFAMKTLGDNFVPSEKAQLSGEESVSDRWILSRLSAAVGLCDTGFKAYDFPSITTA
IYNFWLYELCDVYLESVKPVFSKAEADSASQRQALVCRQTLYTCLEVGLRLLSPMMPFVT
EELYQRLPRRRPQTDSPSICVTSYPDTEEFCWHSEEVDRDMEFVMTVVKTIRSLRADYNL
TKTRADCYLQCIDSATVSLVQKYSLQIQTLSYSQAIIPLIANQPVPEGCAVAIASDRCTI
NLMLKGLIDVEKEMGKLMTKKGDLEKQMEKLREKMAKNDYKEKVPVKVQEQDAEKLRQSQ
TELEKVKEATDNFRKMM
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggccactctctatgtgtctcctcaccctgatgacttcaggagccttctggccctcgtc
gctgcagagttttgtccgtcctcgcgcccgcgaaccatcacagaggaccctcctgtgtct
ctgaatgcccgctccagaccgaccctcgtgctggctgctggggacggtgactccgtcctg
agtggggccagtgctgtggcctggtacctggcctctcagggaaagaagactggtgtggat
gcaaagcagcagagccaggtgtggcagtggatcagctttgcagacaatgaaatcaccccg
gtgtcctgcgctgtggtcttcccactaatggggatgataggagtggataagaagctccag
cagagttcccgtacagagttgttgcgtgtactaaaggctctcgatcatgcacttgaacca
agaaccttcctagtgggagagagcatcaccctggctgatatggctgtagctgcagctgtc
cttctacctttcaaatatgtgttggagccatcggacaagaaggtcttgaccaatgttaca
aggtggttcacaacctgcattaatcagccacagttcctgaaggtgctggggaagatcact
ctgtgtgagaagatggtgccggtaacaccgaagacaaatgctgctgaaaatgccaaagct
gctaatgccagtcctgctgctgactctgctggagccacagctaatggcccaccaaagaca
gaagcccagctgaagaaggaggctaagaagagagaaaagctggaaaagttccaacagaag
aaggaaatggaggcgaagaaaaagactcagccaccggcagagaaaaaggcaaaacctgag
aagaaggagctgggagtgatcgcgtacaacgcccctactcctgctggagagaaaaaagat
accatcagtccacttcctgactcctacagccctcagtatgttgaggctgcctggtatcca
tggtgggagaagcagggatacttcaagcctgagtttgggagaaagagtattagtgagcaa
aatcctcgtggcgtcttcatgatgtgtatccctccacctaatgtgaccggatcacttcac
ctgggtcacgccctcaccaatgccattcaggacagtctgaccagatggcacaggatgcgc
ggtgagaccaccctgtggaacccaggctgtgatcacgctggtatcgccacacaagtggtg
gtggaaaagaagctgatgagagagaagggcatgagccgccacgacctgggcagggaaaac
ttcatccaagaagtctggaaatggaaaaatgaaaagggagatcgcatctaccaccagctg
aagaagctgggctcctctctggactgggacagagcctgcttcaccatggaccccaaactt
tcctatgcagttcaagaggcgtttattcgaatgcatgaagagggagtgatctacaggagc
aagaggctggtcaactggtcctgcacactaaactctgccatctctgacattgaggtggat
aagaaggagctcactggcagaactctgctgcctgtgcctggttacaaagagaaagtcgag
tttggagtgttggtttctttcgcctacaaggtagacggatcagacgaggaagtgattgtg
gccacaactcgtattgagactatgctgggagacacggctgtagctgtgcaccctgccgac
tccagatatcagcatctgaaggggaaaatggtactgcatcccttcagtgatcgcaagatg
ccgattgtctttgatgactttgtggacatgaatttcggaacaggcgctgtcaaaatcacc
cctgctcatgaccataatgactacgaggttggagagagacacaatctggccttcatcaac
atattggatgagaacggcctgctcattaacgttcctcctcccttcctgggtatgaagcgt
tttgaggctaggaaggcagtgcttcaggctctcaaagaccgagggcagtttaaagagatc
aaagacaaccctatggttgtaccagtctgcagtcgttccaaggacatcgtggagccgctg
ctgaagccacagtggtatgtgaactgcacagacatgggcaagcaggccgctgacgccgtc
agagagggacagctcaaaatcatccctgatcaccacctcaagacctggttcaactggatg
gacaacataagggactggtgtatctctcgtcagctgtggtggggtcaccgcatccctgca
tacttcgtcactgtcaacgatccttctgttaaagcaggcgaggacatggatggtcattac
tgggtgagtgggagatcggaggaagaggccagagagaaggcagcaaaacgcttcaatgtg
tcagctgacaaaatcaccctcagacaggatgaggatgttctggacacttggttctcgtct
ggcattttcccattctccatcttcgggtggcctaatgagacccaggacctgaatgtgttc
taccctggcaccttgctggagacaggtcatgacatcctgttcttctgggtcgctcgtatg
gtgatgatgggcctcaaactgaccggcaagctgcccttcaaagaggtttatctgcatgca
gtggtgagggacgctcacggaagaaagatgagcaaatctttaggcaatgtcattgaccct
cttgatgtcattactggaatctccattgagggtcttcatgcccagttgatagacagtaac
ttggatccactggaggttgagaaggcaaagcagggccagaagtcagactatccaaatggc
atcccagaatgcggcacagatgctctgcggtttgccctgtgcgcctacacgggccaaggc
agggatatcaacctggatgtcaaccgtattctgggttaccgtcacttctgcaacaagctg
tggaacgctgtgaagtttgccatgaagacactgggagacaactttgtaccatctgagaaa
gcccagttgtctggagaggaaagcgtatcagacaggtggattctgtctaggctgagtgct
gcagttggtctctgtgacactggcttcaaggcctatgacttcccatccatcaccaccgcc
atctacaacttctggctctatgagctctgcgatgtctacctggaaagtgtgaaaccagtg
ttcagcaaagcagaggcagacagtgccagccagagacaagcgctggtgtgcagacagacc
ctttacacttgtctggaggtcggtctgcgcctcctgtctcccatgatgcccttcgtcact
gaggaactctaccagaggttaccacgacgacgacctcagactgattccccaagcatctgt
gtcacatcttaccctgacactgaagagttctgctggcacagcgaggaggtcgaccgtgac
atggagtttgtcatgactgttgtcaagacaatccggtcactgagggcagactacaacctg
accaagacccgagctgactgctacctccagtgcatagactctgctactgtgtccctggtg
cagaagtacagtctgcagattcagaccttgtcgtactcacaggcaatcatccctctgatt
gccaatcagcctgttccagagggctgcgctgtggccatcgcctctgacagatgtactatc
aacctcatgctcaagggtctcattgacgtagagaaggagatggggaagctgatgacaaag
aaaggtgacttggagaaacagatggagaaactgagagagaagatggcaaagaacgactac
aaagagaaggtgccagtgaaggtgcaagagcaggatgctgagaagctacgacagagccag
actgaactcgagaaagtaaaagaagccacggacaacttcaggaaaatgatgtaa
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