Scomber scombrus (Atlantic mackerel): 133982940
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Entry
133982940 CDS
T10651
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133982940 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133982940 (cstf3)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133982940 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_6
TPR_19
VapC50_C
Motif
Other DBs
NCBI-GeneID:
133982940
NCBI-ProteinID:
XP_062277819
LinkDB
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Position
1:complement(17011044..17022279)
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AA seq
716 aa
AA seq
DB search
MSTEAAAEQAATEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVT
QFPSSGRFWKLFIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ
YLEQSSKLLAEKGDMNNSKLFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRMRYEKV
HSIYNKLLAIEDIDPTLVYIQYMKFARRAEGIKSGRTIFKKAREDLRTRHHVYVTAALME
YYCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPE
KSGEIWARFLAFESNIGDLASILKVERRRFTAFKDEYEGKETALLVDRYKFMDLYPCSAS
ELKALGYKDVSRAKLASLLPETVVTPSVPALKDEVDRKPEYPKPDTNQMIPFQPRHLAPP
GLHPVPGGVFPVPPAAVILMKLLPPPTCFTGPFVQVDELMETFRRCTLPETVDAAVELIT
GRQPDAGGEGNGSMENHAVAKSLKRPNADSDEEDDKGAVAPPIHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaggcagcagccgaacaggcagcgacagagtacatcccagagaaggtgaag
aaggcagagaagaagttggaagaaaacccatatgaccttgacgcatggagcattctgatt
cgtgaagcacagaaccaacctatagataaagcaaggaagacatatgagcgacttgtcacg
cagttcccaagttctggcagattctggaaactgttcattgaagctgagatcaaggctaaa
aactatgacaaagtagaaaagttgtttcagagatgcctcatgaaggtgctacacatcgac
ctgtggaaatgctacctctcatatgtccgagagaccaaaggaaaactgcccagctacaaa
gagaagatggcgcaggcgtatgacttcgccctggataaaattggcatggagattatgtca
tatcagatatgggtggactacatcaacttcctcaaaggagttgaagctgttggctcatat
gcagagaaccaacggatcaccgcggtacggagggtttaccagagaggctgtgtgaatccc
atgatcaacattgagcagctctggagagattacagcaaatatgaagagggaatcaatgta
cacttggccaaaaagatgattgaagatcgaagcagagactacatgaatgccaggagggtt
gcaaaggagtatgagactgtgatgaaggggctggacaggaatgcaccctcggtaccaccc
cagaactcccctcaggaagcccagcaagtggaaatgtggaagaagtacatccagtgggaa
aaaagcaacccgctacgcacagaagaccagaccctcatcacaaagagagtgatgtttgcc
tatgagcagtgcctcctggtgctgggccaccatcctgacatttggtatgaggcagcacag
tacctggagcagtctagcaaactgttggcagagaaaggggacatgaataattccaagctg
tttagtgacgaggcagctaacatctacgaacgtgccattgggactctactgaagaagaac
atgcttttgtacttctcatttgctgactatgaagaaagtcgaatgaggtatgagaaggtt
cacagcatctataataagctgttggccattgaggacattgaccccacactggtctacatc
cagtacatgaagtttgccaggagggcagagggcatcaaatcaggtcgcaccatcttcaaa
aaggccagagaggatttgcgcacacgtcaccatgtgtacgtgactgcagcactgatggag
tactactgcagcaaggataaatcagtggccttcaagatttttgagcttggtttgaagaaa
tatggtgacattccagagtacatacttgcgtacattgattacctctcacaccttaatgag
gataacaacaccagggttctgttcgaacgtgtcctcacctcaggaagcttgtcgccagaa
aagtcaggtgaaatctgggctcggttcctggcttttgagagcaacataggagacttggcg
agtattctaaaagtggagcggaggcgtttcactgccttcaaagacgagtacgagggcaaa
gaaacagccttgctcgtagacagatacaagttcatggacttgtatccctgctccgctagt
gaactcaaggctcttggatacaaggatgtgtctcgtgccaaactggcatcgctgcttcca
gagacagtggtgacgccctctgtgcctgcactaaaagatgaagttgaccgtaaacctgag
taccccaaacctgacaccaatcaaatgatccccttccagccacgtcaccttgcccctcca
ggtttacaccctgtccctggaggagttttcccagtccccccagctgctgttatcctaatg
aagctgctccctccgcctacgtgcttcactggtcccttcgttcaagtggatgagctcatg
gaaactttcaggagatgcacactacctgagactgttgatgctgctgtagagctcatcact
ggcagacagcctgatgcaggaggggagggcaatggatcaatggagaaccatgctgttgcc
aagtcactcaagaggcctaacgcagactctgatgaggaggatgacaaaggagcagtcgct
ccacccatacacgacatctaccgcgcacgccaacagaagaggattcgataa
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