Scomber scombrus (Atlantic mackerel): 133983141
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Entry
133983141 CDS
T10651
Name
(RefSeq) LOW QUALITY PROTEIN: DENN domain-containing protein 4B-like
KO
K20163
DENN domain-containing protein 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133983141
Membrane trafficking [BR:
ssco04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
133983141
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
dDENN
PPR_2
DENN
PPR_3
PPR_long
PPR
COPI_C
Motif
Other DBs
NCBI-GeneID:
133983141
NCBI-ProteinID:
XP_062278084
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Position
7:31283637..31293595
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AA seq
1050 aa
AA seq
DB search
MADVLLAPMPFIVGVHSSYFDLYDPPTDVVCVDLDTNTIFQLEDKKPLSWRSLPRKHGKT
LFNTLTNLHKTLEKICTPGQEEATLEFLLTDYDQIYRRQKQLELEIQEAFLRFMSCLLRG
YRSFLLPITQAPSDTTTDCSSLFNLQGFLKSRDRTQQKFYNQMTRTQMFTQFIEECSFVS
DRHACLEFFDECVQKVDVEKPEDVRLIDLDETHSGEHTVFIMPPEEPQEADGSECPAHYS
YETFPTLNIELFDRPQDQLRVPAKGSAPSSPAPRRTKQEIKLAQKRAQKYAAVPDMWSKC
LLGHCYGLWFIYLPTFVRAETAKVRALHAAYDVLKHMENRKVVLPDEVCYRILMQLCGQY
GQPVLAVRVLLEMKKAGITPNTITYGYYNKAVLESKWPSTNQGGRLRWAKLRNVLLAVAQ
FRQPIKRRQKSSSVGSRGEAMMDPDQKLRPASALIRQSSWSGLSESSSHESLTGSLVKSN
SLNSMKMSTDKVKLSRKTLLRNAGTNGCGDTVSSKPPLARRDTSTPPPAPPAGVLVRRSQ
VCLSTFYKECAESADSEPDCSCQPAERDGRPAGSRDSASRNKVVDENYNNVTSPNRGGLA
GKLQQLLTPTRHRVSVRRAASVDDRRPGGGGGIGRRVSEQRQSRKAQVAETLLKAKERLV
NATLRGLTSSSLSVGSDLDLTEDASPAYHLRRSWDANQDGVGLEVLMSSCSLCRNCNLLV
YDEEIMAGWTSDDSNLNSSCPYCSASFVPFLNAEICDLGPVSSVERSNWNLEDEVESAVR
PPSGHEASLRHQCNGLSEDSSSETSSYSENSRTTTGSSAGGAPQVAVAYLSPLVLRKELE
SLLENEGDAVLAQPQFLDSHSIIFWNLVWYFQRLGLPSNLLQLVRASPLFSQLTQSENSA
VRVRLLWDTLTPDTDQWPPLYILWRIHSGVPMRNHSWRRHNHPFTLAFLEEVLRWVGMNE
VHKAVTLFIDTLAKQRESPRIQRSLYREFLFLTLAAMGKDHVAAFDKKYKGAYSRLSGTM
GREELRKKRAQPPNPKAIDCRRSFHPPLEC
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtgctgctggctccgatgcctttcatcgtgggcgttcactccagctacttc
gacctgtacgaccccccgacagacgtggtgtgtgtcgacctggacaccaacaccatcttc
cagttggaggataagaagccgttgtcgtggcgatcgttacccagaaagcacggcaagact
ctgttcaacaccctcacaaacctccacaagactcttgagaagatttgcactcccggccag
gaggaggcgacgctggagttcctgctgacggactacgatcagatctacaggcgtcagaag
cagctggagctggagatccaggaggcgttcctgcgtttcatgagctgcctgctgcgagga
taccgatccttcctgctgcccatcacccaggctccgtcagacaccaccaccgactgcagc
tccctgttcaacctgcagggcttcctgaagtctcgggatcgaacgcagcagaagttctac
aaccagatgacgaggactcagatgttcacccagtttatcgaggagtgctccttcgttagc
gaccgacacgcctgcctcgagttcttcgacgagtgcgtccaaaaggtggatgtggagaag
ccggaggacgtgaggctgatcgacctggatgagactcacagcggagaacacaccgtcttc
atcatgcctcccgaagagcctcaggaagctgacggctccgagtgccccgcccactacagt
tatgaaaccttcccgacgttaaacatagagctgtttgaccggcctcaggaccagctgcgt
gtccccgctaaaggcagcgctcccagtagccccgccccccgacgcaccaaacaggagata
aagttggcccagaagcgagctcagaagtacgcagcggtgccggacatgtggtccaagtgt
ctgctgggtcactgctacggactctggttcatctacctgcccaccttcgtccgggccgag
accgctaaggtccgagctctgcacgcggcctacgatgtcctcaaacacatggagaaccgc
aaggtggtgctgccggacgaggtgtgttacaggatcctgatgcagctgtgcggtcagtac
ggtcagccggtcctcgctgttcgggtcctgctggagatgaagaaggcgggaatcacaccc
aacaccatcacctacggatactacaacaaggcggtgctggagagcaagtggccctccacc
aatcagggcgggcgtctccgttgggccaagctgaggaacgtcctgttggccgtggctcag
ttcaggcagccaatcaaacggcggcagaagagcagctccgtggggtcgcggggagaagcg
atgatggaccccgatcagaagctccgccccgcctccgccctgattcgtcagtccagctgg
agcgggctgagtgaaagctccagtcacgaatctctgacgggatcgctggtgaagagcaac
agtctgaacagcatgaagatgtccaccgacaaagtcaaactcagcaggaagaccctcctc
cgtaacgccgggaccaacggctgtggagacaccgtctccagcaaaccccctctggcacgc
agagacacctccactccgcctccagcgccccctgctggtgtgctggttcggcggagtcag
gtctgcctctccaccttctacaaagagtgtgcagagtccgccgactcggagccggactgc
agctgccagccggcggagagagacggcagacctgcggggtcacgtgactcagccagcaga
aacaaagtggtggacgagaactacaacaacgttacctccccgaaccgaggaggcctggcg
gggaaactgcagcagctcctcacgccgacccgacatcgtgtgtcagtccgacgggccgcg
agcgtagacgaccggcggccgggaggaggaggagggataggacgaagggtgtctgagcag
aggcagtcgaggaaagctcaagtggctgaaactctgctgaaagccaaggagaggctggtc
aacgctaccctcagaggtctgacatctagttcgttgtctgtaggaagtgacctcgacttg
acggaggacgccagtccagcgtatcatctgcgcaggtcctgggacgccaaccaggacggg
gtggggctcgaggtgttgatgtccagctgctctctatgtcgtaactgtaacttgttggtt
tatgacgaggagatcatggccggctggacatcggacgactccaacctgaactcgtcgtgt
ccgtactgctccgcctccttcgtcccgttcctcaacgctgagatctgtgacctcggaccc
gtcagcagtgtagaacgcagcaactggaacctagaggacgaggtggagagcgcggtgagg
ccccctagtggccacgaggcgtcgctgcgacaccagtgtaacggcctgagtgaggactcc
agctctgagaccagcagctactcagagaacagcagaaccaccacgggctcgtcggcgggc
ggcgctccacaggtggcggtggcctacctgagccctctggttctgaggaaggagctggag
agtctgctggagaacgagggcgacgcggtgctggctcagcctcagttcttggacagtcac
tccatcatcttctggaacctggtctggtacttccagcgcctcggcctgcccagcaacctg
ctgcagctggtccgggcctcgccgctcttcagccagctgacacagtcagagaactctgca
gtgagagtgagactcctctgggacacgctgaccccagacacagaccagtggccccccctc
tacatcctctggaggatccacagtggcgtcccgatgaggaaccacagctggcggagacac
aaccacccgttcacgctggccttcctggaggaagtgctgcggtgggtcggcatgaacgag
gtgcacaaagccgtcacactcttcatcgacacgctggccaaacagcgggaatcacctagg
atacagaggagtttatacagagagttcctcttcctcactctggcagctatgggaaaagat
cacgttgctgcgttcgataagaagtacaaaggcgcgtactctcggctcagcggtacgatg
ggtcgcgaggagctgcgtaagaagcgagctcagcctccgaaccccaaagccatcgactgc
agacgcagcttccacccgccgctcgagtgctga
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