Scomber scombrus (Atlantic mackerel): 133983212
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Entry
133983212 CDS
T10651
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133983212 (ddx61)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133983212 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
133983212 (ddx61)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133983212 (ddx61)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133983212
NCBI-ProteinID:
XP_062278194
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Position
7:21370124..21381894
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AA seq
481 aa
AA seq
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MATARTANPAPMIGLNKPANGQLRGQQLGPLSTAQLPNAPQNKSSIPQSSGGIKFGDDWK
KSLELPPKDNRMRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG
RDILARAKNGTGKSGAYLIPLLERIDTKKDHIQAVVMVPTRELALQMSQISIQLSKHLGG
VKVMVTTGGTNLRDDIMRLDEIVHVVIATPGRILDLLKKGVAKMDKTQMMVMDEADKLLS
QDFVVLIEDIISFLPKERQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLKGITQYY
AYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYR
NRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL
AINLITSEDRYNLKNIEDQLITDIKPIPSSIDKNLYVAEFHSVDPDDDDCIGSKNKELGA
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaaccgcaaacccagcaccaatgattggactgaataaaccagcaaat
gggcagctcagaggccaacagttgggacccctttcaactgcccaactgcccaatgcccct
cagaataagagcagcattcctcagagcagtgggggcatcaagtttggtgatgactggaaa
aagagcctggagcttcctccaaaagacaacagaatgagaacctcggatgtcacatcaacg
aagggaaatgaatttgaagactactgtctaaagcgagaacttctaatgggaatctttgaa
atgggatgggagaaaccctcccctattcaggaggaaagcatccccatcgctctctcaggc
agagatattttggctcgggcaaagaacggcacaggaaaaagtggagcctacctcatccct
ctcttggagaggatagacacgaagaaggatcacattcaggccgtagtaatggttcccaca
agagagttggccctgcagatgagccagatcagcattcagctcagcaagcaccttggaggg
gtcaaagtcatggttaccactgggggcaccaacttgagggatgacatcatgcgacttgat
gagatagtgcatgtagtgattgctacacctggcaggatactagacctgctgaagaagggt
gtggcaaaaatggataagacacaaatgatggtgatggatgaggcggataagcttctgtcc
caggattttgtggtgctgattgaagatattatcagcttcttaccaaaggaacgtcagatt
ctgctttactctgccacatttcccatcagtgtgcaaaaattcatgagcaagcaccttcag
aagccttatgaaatcaacctgatggaggaactgaccttgaaaggcatcacccagtactac
gcgtatgtgactgaaagacagaaggtccactgtctcaacacactcttctcgaggcttcag
atcaatcagtcaatcatcttctgtaactcaacccagagggttgaacttctggctaaaaaa
ataacccaactgggctattcgtgcttctacattcatgcgaagatgatgcaggagtacagg
aaccgtgtgttccatgacttcaggaatggattgtgcagaaacctggtctgcacagacctg
ttcactcggggaatcgacatccaggcagtaaatgtggtcatcaattttgactttcccaaa
aatgcagagacctaccttcaccgcattggcagatcagggcgttttggtcatttgggtctg
gccatcaatctgataacttcagaggaccgatacaacctgaagaacattgaggaccagctg
attactgacatcaagcccattcccagcagcattgataagaacctgtatgtggcagagttt
cactctgttgacccagatgatgatgactgcattggatccaaaaacaaagaactgggagca
gcctga
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