Scomber scombrus (Atlantic mackerel): 133983231
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Entry
133983231 CDS
T10651
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133983231 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133983231 (cnot10)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133983231 (cnot10)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_14
TPR_7
ANAPC3
TPR_8
ARM_TT21
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
133983231
NCBI-ProteinID:
XP_062278220
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Position
7:complement(545138..557207)
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AA seq
741 aa
AA seq
DB search
MADSTEQNETKHDSSSSPGMSDQEKEMAASAYEAFSTGKYDDSLKHLEALQELNKEDYKI
AMNKSVVEFYKSGQTTTGNLKQTLMAMKNQVHTSSEDVDGLDDVENCLLYYNQAIIHYHM
RQYSEAISIGEKLYQFLEPFEEKFAQAVCFLLVDLYLLTFQAEKALHLLAVLDKLSVQGS
NKNSKGENNSSNKDGANQRAEFTALIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVMNT
AGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPIKTGECVRCMFWNNLGCIHFA
MGKHNLGIFYFKKALQENDHTCAQLGDGSNGQSKKFTGIPMCALLANKRYELLYNCGIQL
LHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCISANKGGSEQESKGLPCKKGIVQSIV
GQGYHRKIVLASQSTQNTIYSEGQSAAIPVASMEFAAICLRNALLLLPEHQQQDMKTENG
SKSSSQSGSTESGSENSDACSGKGQETDKFLSAAPSSPLRKQEVENLRCSILACSAYVAL
ALGDNLMALTHAEKLLHQTKVSGSLKFLGHLYAAEALISLDRISDAIAHLNPENVSDVSM
GVLTSEQDQGSDKGDEPVESSGKQTPLCYPSSVTSARAMMLFNLGSAYCLRSEYDKARKC
LHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPTAVQRVSPDSRKKPV
QPFQSAQPIQLPSSFTQVQRK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagtacagaacaaaacgagacaaagcatgacagctcatcctcccctggaatg
tcagaccaagagaaagaaatggcagccagtgcatatgaagcgttttcaacggggaagtac
gacgactctctcaaacaccttgaagccctgcaggagctgaacaaagaggactacaagatc
gccatgaataaatctgttgtcgagttttacaaaagcggtcagactaccacagggaacctg
aagcagactctgatggcaatgaagaaccaggttcacacatcatcagaagacgttgacggg
ttggatgatgttgaaaattgtttgctgtattataatcaagccatcatccactatcatatg
cgtcagtactctgaagccatctccattggagagaagctctaccagtttctggaaccattt
gaagagaagtttgctcaggccgtgtgtttcctgctggtggatctctacttgctcaccttc
caggcagagaaagctcttcatctgctggctgtgctggacaaactgtctgtgcagggaagc
aacaagaacagcaaaggagagaacaatagctcaaacaaagatggagcaaaccagcgagca
gagttcacagcattgattgaagcagctaaatcaaagatgcaccagtacaaagtgagagcc
tacatccagatgaagtcctccaaagcctgtaaaagggagatcaagtcagtgatgaacaca
gcaggaaattctgcaccctcactcttccttaagagtaactttgagtacctgagaggaaac
taccggaaagcagtgaagctgctgaacagctccaacattgcagagcatcctggacccatc
aagacaggtgaatgtgttcgctgtatgttctggaacaatctgggctgcattcactttgca
atggggaaacataacctaggcattttctacttcaagaaggcactgcaagagaacgaccac
acatgtgcacagctgggagacggcagcaacgggcaatctaagaagttcacaggtatccct
atgtgtgctctactagccaacaagcgctatgagctgctgtataactgtggcattcagctg
ctgcacattggcaggcctctggcagcatttgagtgtctgatggaggcggtgcaggtctac
cactccaaccctcgactgtggctacggctggcagagtgttgcatctctgctaacaaaggg
ggttcagagcaggagagcaaaggtttaccttgtaaaaaaggtatagttcagtctattgtc
gggcagggctaccatcgcaagattgtcctggcatcacagtctacccagaataccatctac
agtgaaggccagtcagcagctatcccagtagccagtatggagtttgcagccatctgcctg
aggaatgctctgctgctactgcctgaacaccagcagcaggacatgaagacagaaaacggc
tccaagagctccagccaatcaggaagcacagagagcggcagcgagaacagtgacgcctgc
agtgggaaaggtcaggagacagataagttcttgtctgcagctccatcgtctcctctcaga
aaacaggaggtagaaaacctcaggtgctccatcctggcctgtagtgcctatgtggcgtta
gcactgggagacaacctgatggctctaacccatgctgagaaactgctccatcaaaccaag
gtttcaggatccctcaagttcctgggtcacctctatgctgctgaagccctcatctcattg
gacaggatctctgatgctattgctcacctcaacccggagaatgtcagcgatgtgtcaatg
ggggtgttgaccagcgagcaagaccaagggtctgataaaggagatgagcctgtcgagtcc
tcagggaagcagacccccctgtgttaccccagcagtgtgacatcagctcgggccatgatg
ctcttcaacctgggcagcgcatactgtttgaggagcgagtatgacaaggcccgaaagtgc
ctgcatcaggctgcgtctatggtaaacaccaaggagattccccctgaagccatcctactg
ggagtctacttggagctacagaacggaaacacccagctggctctgcagatcatcaaacgg
aaccagctgctgcccactgcggtccagagggtctccccagactcaagaaagaaacccgtc
cagccattccagtctgcccagcccatccagctaccctcatccttcacacaagtgcaacgc
aaatga
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