Scomber scombrus (Atlantic mackerel): 133983276
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Entry
133983276 CDS
T10651
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04621
NOD-like receptor signaling pathway
ssco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
133983276 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
133983276 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssco04054
]
133983276 (nod1)
Pattern recognition receptors [BR:
ssco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
133983276 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
WHD_NOD2
LRR_6
LRR_4
AAA_16
NPHP3_N
Roc
MRM3-like_sub_bind
PIF1
RsgA_GTPase
AAA_22
ABC_tran
Motif
Other DBs
NCBI-GeneID:
133983276
NCBI-ProteinID:
XP_062278290
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All DBs
Position
7:complement(3959299..3968130)
Genome browser
AA seq
941 aa
AA seq
DB search
MGQIEESKVSCVNILTCHRELLVSRLKSIQCILDNLLACDFLCEEEVEFVQRTATKTDQV
RKILELVQCKGEEACTYFIFIIYKVCDAYIDLQPWLKEINYNPSEDVKVMKVVNTDPISR
YCEKLRHEISRDTGFIMSYGQREETRLEDLYTDTLIELMNDSNESLGFLESLDQLLGEHA
VFNPQGETIYVMGDAGVGKSILLQKLQNVWSRKELQTDAIFFFKFRCRMFSTFKATEQIS
LRDLLFKYSCYPDHDPDNEVFDFILRYPEKVIFTFDGYDEIQEDLDLMNVPESVSTEEKA
HPLQLLLSLLCGKLLKGSQKVLTARTGIEIQSRVIRKKVVLRGFSPAHLKTYIDLRFKDQ
EQRELVLVQLEASPHLCGLCSTPLFCWIVFKSFTHLHTMHDSFELPETCITLTGIFLMLS
EVFLSRSASPAPSLLKKRTRCASQTFKTGLRPLTAFAKLALQGMERGSFICSQEEITACG
LTEEDLALGFLRAVSDYDASESTATFEFLHMTLQSFLAAFALVLDEQATVDSILKFFTEC
SRKRERSCLPLNFCIGGSSKATEKKPFTPNEHLQFINLFLCGLLSKAHSSLMEHLVSPSL
LKKKRALLKSYLSNSVKIHLHGLPYHDGNEGRKVHVLPNFLWMLRCIFETGNNDIAQMTA
KGIKAGFIKLGFCNVYSGDCSALNFVLQHRQKHLGLDMDNNNISDYGINQLRPSFCKMTI
VRFCVNQLTDSSIEILAEELCKHKVVEVLGLYSNHITDVGVKLVAKIVEECPKLRTLKIG
KNKITSVGAKYLASAIQKSKSIFEVGMWGNTIGDEGAEAFAEALRHHPSLANLSLSANGI
TSKGGKSLAEALKENSSLRIFWLVQNEMSDDSAPHWAELVRANTGLTNLWLIDNRFTLDG
IKHLAEALSHNTALKEICVKSNQLSEEEQKQFSEEKRLRFN
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaaatagaagaaagcaaggtgtcctgtgtgaacatcctcacctgccacagagag
ctgctggtatccaggttgaagagtattcaatgcatactggacaacctgctggcctgcgac
ttcctctgtgaggaagaggttgagtttgtacagcgaactgccaccaagacagatcaggtg
cgcaaaatcttggagctagtccaatgcaaaggggaagaggcctgcacgtacttcattttc
atcatatataaagtatgtgatgcatacatagatctccagccatggctgaaagagatcaac
tacaacccaagtgaagatgtgaaggtgatgaaggtggttaacacagatcccatcagcagg
tattgtgagaagttgaggcatgaaataagccgggacaccggcttcatcatgtcatacgga
cagcgagaggagacccggctggaggacctctatactgacaccctgattgaactgatgaac
gacagcaatgaaagtctaggcttcttggagagtctggaccagctccttggggaacatgcg
gtcttcaatccccaaggagaaaccatctacgtaatgggggacgccggtgtggggaaatcc
atcctcctgcagaaactccagaatgtgtggtccaggaaagagctgcagacagatgccatc
ttcttctttaagttccgctgtaggatgttcagcaccttcaaagccacagagcagatctcc
ctcagagaccttttgttcaaatacagctgctacccagaccacgatcctgataatgaagtg
tttgatttcatcctgcgctaccctgagaaggttatttttacgtttgatggctacgatgag
attcaggaggatctggacctgatgaacgtccctgaaagtgtgtcaacagaggagaaggca
caccctctccagctacttctcagcttgctctgtgggaaactactcaagggttcgcagaag
gttctaacagcccggacagggatcgagatccagagcagggtgatcagaaagaaggtggtt
ctgcgggggttctccccagctcatctgaagacctatattgatctgcgctttaaggaccag
gagcaacgagagctggtcttagttcagctggaagctagcccccacctctgcggcctgtgc
tccactccactattctgctggatcgtattcaagagcttcacacacctgcacaccatgcac
gatagttttgagctgcccgaaacctgcatcacactcaccggcatcttcctcatgctgtca
gaggtgttcctcagtcgctcggcctcaccagctccatctctgctgaagaagagaacccgc
tgtgcctcacagacattcaaaacagggctcaggcccctcacagcattcgccaagttggct
cttcagggtatggagagaggtagcttcatttgcagccaagaggagattactgcttgtggc
ttgacagaggaggatctagcccttggctttctcagagctgttagtgactatgacgccagc
gaaagcaccgctacctttgaattccttcatatgactctgcagtcgttcttggcagcgttt
gctcttgtgttggatgagcaggccactgtcgactccatcctcaagtttttcacagagtgc
agcaggaagagggaacgttcgtgtttgcctttgaacttctgcattggtggatcttcaaag
gctaccgagaagaagccctttactccgaacgaacaccttcagtttattaatctgttcttg
tgtgggctgctctccaaggctcacagcagcctgatggagcatctggtatctccttcgtta
ctaaagaaaaaacgggccttgctaaagtcctacctgtccaacagtgtaaagatccacctc
cacggcttaccctaccacgacggtaatgagggcaggaaagttcacgttctgcccaacttc
ctatggatgctgaggtgtatctttgagacggggaacaacgacatcgctcagatgactgcc
aaaggcatcaaagctggcttcatcaagctgggtttctgtaacgtgtattcaggtgactgc
agcgccctgaactttgtactgcagcaccgtcagaagcacctgggcctcgacatggacaac
aacaacatcagcgactatgggattaatcagctaaggccatcattctgtaagatgacaata
gtgagattttgcgtcaatcaactgacagacagcagcattgagattcttgcagaggagctg
tgtaagcacaaagttgtggaagtcttaggactttacagcaatcacatcacagatgttgga
gtcaagctagttgctaagatagttgaggaatgcccaaagctacgaactctcaagatcggt
aagaacaagatcaccagtgtcggtgcaaagtatttggccagcgcaattcagaagagcaag
tccatatttgaagtgggaatgtgggggaacaccattggcgatgagggagcagaagcgttc
gcagaagctttgaggcaccacccaagtcttgccaacctcagcctctcagccaatggcatc
acgtcaaaaggtgggaagagcctggcagaagcactgaaagagaacagcagcctcaggata
ttctggttggtgcagaacgagatgtctgatgattcggctccacactgggcagagttggta
agagcaaacaccggtctaaccaacctctggttaatcgataaccgcttcactctggatggc
atcaaacacctggctgaggccctttctcacaacacagcactcaaagagatatgcgtgaaa
agcaaccagctctctgaagaggaacagaaacaattttcggaggagaaaaggctgcgattc
aactga
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