Scomber scombrus (Atlantic mackerel): 133983284
Help
Entry
133983284 CDS
T10651
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133983284 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133983284 (arid1aa)
03021 Transcription machinery [BR:
ssco03021
]
133983284 (arid1aa)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133983284 (arid1aa)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Helix-turn-helix
ARID
133983284 (arid1aa)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133983284 (arid1aa)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133983284 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
133983284
NCBI-ProteinID:
XP_062278303
LinkDB
All DBs
Position
7:13793703..13810880
Genome browser
AA seq
2313 aa
AA seq
DB search
MAAQVATLNTSPPSELKKPDRDPKEESVPGEKQTDKKQAGLDSGSPGRGEPQDGTDGGNA
GGGGEPEMKNGNGNPPRANNNNQNDSVGPEGNNHPGLVHHHGPTFPPPSYGYSQHYGRAP
FHQHGGQQSPGMAAAAGPAVQSSNMMDPYQPNSHEHGFSNHQFNNYNPFPNRTPYPGQTY
AMNSPRSTPAPTAGGQPAKQQQQQQPPPAAAGGPAVMAGSYNNQRYNIGNPQPTSTPTLN
KLLTSPSSTRGYPNYPSGDYSNQEGASKDMGSSGQYGGSNPGWQQRSHHPSPMSPGGAGQ
PLVRNQPPGPMDPMGKMRAQPYGAGSPYGQQSQQGPPTGPQQGPGYPGQGYGPPTPQRYP
VGMQGRTAGSMGGMPYGPQMGSYGQQGPGGYGSQGQAPYYGQPGQASHPGQQQTPYAQPP
AGQPGGQAPYPGQSHPPQTSAPHTQGGAPYQQPHMPPQSQGPLPGPSQGPPQPQPPYSQP
SAPQSGQSTYAQQQGPPSQAPPQPSSQAPPGSQGQSNYPGSTQGPQQPPSQQQQAQSQPP
QQPPGHSQHPQGQPAAYPQNPQQQQQQQQQQQQQQQQQQQQTQQSPYQRFPPPPQQQEVS
QDSFQSNAPPSTQPKSGPEDSQGRPSSLPDLSGSIDDLPTGAESALSPGVSTSGVSSSQG
EQSNPAQSPFSPHTSPHLPGIRGPSPSPAGSPASASTPRTGPLSPANMPGTQMPPRPSSV
QSDGSLHPAMSQSPMAQDRGFMQRNPQMPPYGSPQSASALSPRQSSAGQMHPGMGPYQQN
NSMGGYGQQGGQYGPQGYPRQPGYGNMPNANYTGPGMGPMNPMAGQGGGPPYSGMPPGRM
PPNQMGARPYGPNMGPNMTPNMPPNMGNMPPQVGSGMCPPPGMNRKPQDPAAMQHPATNS
MHNRMPGYPNMSPGMMGSGPPYGPPMNNMPGMMNTQGGSPYPMGPNMANNSSGMVPSPEM
NNKMNNKVDAVVTPKPEPKTKKSNSSTTTNEKIVRLYELGPEPDRKMWVDRYLAFIEEKA
MGMTNLPAVGRKPLDLFRLYMSVKDIGGMAQVSKNKKWRDLATSLNVGTSSSAASSLKKQ
YIQCLYAFECKIERGEDPPPEIFTDNKKNQAAKVQPPSPAGSGSLQGPQTPQSTSSSMAE
GGDLKPPTPASTPHTQMPPMPPGSRSSVNLQDPFSEGSDPAFPRKNMTPNSAYQSGMNTP
DMQGRMGTYEPNKDPFSNMRKVGEQFLPANQGPNSGVGDQQQQQPPQQQQQQQPPFNRGP
PGAMGTMPMGPRQQYPYGPGYDRRSEQGMGPEGNMGSGAPQPNPMMPANADTGMYSPNRF
PPQQPRLDSYGNQYPGQGTPPTGSYPNQQPGMYPQQQQSYKRPVEGGYPPSKRHEAEYSG
PFPGGQQPPQQQQQGGSSAPSSGQQESYNQFGGSGPFPGSDRRPPGPGNQFPFPFGRERM
QGTTGPNAQPAMPPQMMQSGPEGPQGGMWQGPRDMNYQNYPRPQGGPGGPPQGPGYPGMN
RSEEMISSEQRMNHDGQWGGPMGPRQPPYGPAGPGQPMPRSVQSNYQPPQGVQNHIPQVS
SPASMPRPLESRTSPSKSPYMHGVMKMQKAGPPVPAPHIVPPPVQSPLIRRDMPFPLGSV
EATHPVLKPRRRLTVKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSSISTFDL
NTLPGLLELVVEYFRRCLIEIFGILREYEVGDPGQRTLLDPDALKRDLDSTEEEEPRAED
MDQEEDDNDEEEEREMESPAHVKEEEVQEQCSVSRGRDENAGDEDRKSKGSSEQTGSSQP
LPAHERPKQASKFDKFPLKVVRKKDPFVAGQANNHGKLQEFDSGLLHWSAGGGDSTEHIQ
THFEPHKDFLEPRERIPVPQVLLRRRVPEEDLREYCFPMEEEKRKHQDEEEEGPKETSSS
EEAATLAGASEKSSSLPNTEEKRKTDSETKTVEKGPKSHQENNRPIPFFGSALTQRAQPT
STILEDEPHSKDEGPLIALANWQDSLARRCICISNIVRSLSFVPGNDHEMSKHPGLLLLL
GRLILLHHRHPERKQAPLTYEKDEDSDEGMGQRDEWWWDCLELLRENTLVTLANISGQLD
LSIYPESICLPLLDGLLHWAVCPSAEAQDPFPTLGPHSALSPQRLVLETLSKLSIQDNNV
DLILATPPFSRLEKLYGNLVRLIGDRKVAVCREMAVVLLANLAQGDTMAARAVAVQKGSV
GNLLGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSPDMMRRAARALHALAKVEDNHSEFT
LHESRLLDLSVSPLMNSLVSHVICDVLFLIGQS
NT seq
6942 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccactcttaacactagcccgccttccgaactcaaaaagccggat
cgagaccccaaggaggagtcggtaccgggggagaagcagactgataaaaaacaggctggt
ttggacagcgggtcgccgggccggggggagccgcaggacgggaccgacggtggaaatgca
gggggaggaggggagcctgagatgaagaacgggaatgggaacccgcccagggctaacaat
aataaccagaatgactctgttggaccggaggggaataaccaccccggactggtgcaccat
cacggccccactttccctccaccttcatacggatacagccagcactacggtcgggcccct
tttcatcaacatggcggacaacaaagccctggcatggcagctgctgcgggtccggccgtg
cagtcgagcaacatgatggacccgtatcaacctaactcacacgaacatggcttttcaaac
caccagtttaacaattacaacccattcccgaacaggactccctatcccgggcaaacatac
gccatgaactcccctcgcagtaccccggcgccgacagctggggggcagcctgctaagcag
cagcagcagcagcagccaccaccggcggcggcgggaggacccgcggtgatggctggatct
tacaataaccagagatataacattggaaaccctcagcctacatccaccccgactctcaac
aagctgctcacctcccccagctcgacgcgggggtatccaaactacccgtccggagactac
agcaaccaagagggagccagcaaagacatgggcagcagcggccagtatggagggagcaac
ccgggctggcaacaaagaagccatcacccatcgcctatgagcccgggaggtgccgggcag
ccgctggttagaaaccagccacctggtcccatggacccaatgggaaaaatgagagctcaa
ccgtatggagcaggcagtccttatggtcagcaatcgcagcaagggcctcccacaggtccg
cagcaggggcccggttaccctggccagggatatggccctccaactccccagcgataccca
gtgggaatgcaaggacgcactgctggaagcatgggtggcatgccgtatggtcctcagatg
gggtcttacggacagcagggaccaggaggatatggctctcagggccaggcaccgtattat
ggacagcctggtcaggcttctcatccaggccagcagcagaccccctacgcccagccccca
gcaggacaaccgggtggccaggcaccctacccagggcagtcccacccaccgcagacttct
gctccacacacccaaggaggagcgccctatcagcagccccacatgcccccacagtcccag
gggccactgccaggcccatcccaagggcccccacagcctcagccaccttattcccaaccc
tcagccccacagtccggccagtctacctacgcccagcagcagggccctcccagtcaggcc
ccgccgcagccaagttcccaggctccccctggatcacagggccagtccaactacccagga
tccacacaggggcctcagcagcccccctcacagcaacagcaggcacagtcccagcctcca
cagcagccaccgggtcacagccagcacccacaggggcagccggcagcgtacccgcagaac
ccacaacaacaacaacaacaacaacaacagcagcagcagcagcagcagcagcagcagcaa
caaacacaacagtcaccttatcagcgctttcctcctcctccacaacagcaggaggtatcc
caggactcttttcagtccaacgctccaccatccactcagcctaaaagtggcccagaggac
agtcaaggccgcccctccagccttccggacctgtcggggtccatcgatgacctgcccaca
ggcgcagagagcgccctaagtcctggtgtgagcacgtcaggtgtgtcgagcagccaaggc
gagcagagcaacccggctcagtcacccttctcccctcacacctctccccacctgccaggc
atccgagggccttcaccttccccagccggctcccctgccagcgccagcacgccccgcaca
ggaccactgtcacccgccaacatgccagggacccagatgcctcccaggccatcaagtgtg
cagtcagatgggagcttacaccctgcaatgagtcagtctcctatggcccaggacagaggg
tttatgcagagaaaccctcaaatgcccccatatggctcccctcagtcagcctctgcactg
tcaccacgccaatcctcagcgggacagatgcatcctgggatgggcccatatcagcagaac
aactcaatgggcggctatggacagcagggaggacaatatggccctcaaggttatcctcgg
caacctggctatggcaacatgcccaatgctaactacactgggccgggcatgggcccaatg
aaccccatggcaggccagggtggggggccgccgtattctggcatgcctccaggaaggatg
cctccgaatcaaatgggggcacgtccctacggccccaatatgggccccaacatgacccct
aatatgcctcctaacatgggcaacatgccaccacaggtaggctcagggatgtgtcctcct
ccaggaatgaacagaaagccccaggaccctgcagccatgcagcaccctgccactaactcc
atgcacaacaggatgcctggttaccccaacatgtctccgggcatgatgggctctggccca
ccctatggccctcccatgaacaacatgcctggaatgatgaacactcaaggtggatcacct
tatcccatgggtccaaacatggccaataactcaagtggtatggtgcccagtccagagatg
aacaataagatgaataacaaagtagatgcagttgtaacacccaaaccagaacccaaaact
aagaagtccaattcttccaccacaaccaatgaaaagattgtgcgcctgtatgagttaggc
cctgagccggacaggaagatgtgggtggaccgttatttggccttcattgaagagaaagcc
atgggcatgaccaacctgcctgctgttggacgcaaaccgctcgacctcttccggctgtat
atgtctgttaaagatattggaggcatggcacaggtaagtaagaataagaagtggcgtgat
ctggccactagtctcaatgtgggtacatccagcagtgctgctagttctttgaagaagcag
tacatccagtgtctgtatgcctttgagtgcaaaattgagcgtggtgaggaccctcctcct
gagatctttacagacaacaaaaagaaccaagctgctaaggtccagccaccctctccagct
gggtcaggctctctgcagggtcctcagacaccccagtccaccagcagctccatggctgag
ggaggagacttaaaacctcctactccagcctccactcctcatacccagatgccccccatg
ccaccagggtccaggagcagtgttaacttgcaggaccccttctctgaaggaagtgacccc
gctttccccaggaagaacatgactccaaactctgcctatcagtctggcatgaacacccca
gacatgcaaggccgcatgggcacctacgaacccaacaaggatccctttagtaacatgcgg
aaagttggagagcagtttctacctgccaatcagggccctaacagcggggtgggtgaccaa
cagcagcagcaaccgccacaacaacagcaacagcagcagcctccattcaacagaggaccg
cctggggccatgggcacgatgccaatggggcccagacagcagtatccttacggaccaggc
tacgacaggagatcggagcaaggaatgggcccagaaggcaacatgggatctggtgctcct
cagccaaaccctatgatgcctgccaatgccgacacggggatgtattcgccaaatcgcttc
ccaccacagcagccacgacttgattcctatggtaatcagtatcctggacagggaacgccc
cctactggctcctacccaaatcagcagcctggaatgtacccacagcaacaacagagttac
aagcgtcctgttgaagggggttaccctccatcaaaacgtcatgaggccgagtacagtggg
cccttccctggtggacaacaaccaccgcagcagcaacagcaaggaggttcctctgcaccc
tcttcaggacaacaggagtcgtacaatcaatttggcggcagtgggcccttccctggctct
gatcgccgtcccccaggcccaggcaatcagttccccttcccctttggtcgtgaacggatg
cagggaaccacagggcccaatgctcaacctgctatgccccctcagatgatgcagtcaggc
cctgagggtcctcagggaggcatgtggcaggggccgcgagacatgaactatcagaattac
cctaggccgcagggtggccctgggggcccacctcagggacccggttaccctggcatgaat
cggtcagaggagatgatctcatcagagcagcggatgaatcatgatggccaatggggaggt
ccgatgggcccgcggcagcctccgtatggtccagcggggccaggccagcctatgcctcgt
tccgtacagtccaactaccagccccctcagggtgtgcagaaccacattccacaggtgtcc
agccccgcctccatgccccgcccattggagagcaggacatcacccagtaaatctccctat
atgcacggagtaatgaagatgcagaaggctggccctccagtgcctgcaccacacatagtg
ccccctccagtgcagtcacctctaatacggcgagacatgccttttcccttgggctctgta
gaagctacccatcctgtcctgaaaccacgccggagactcaccgtgaaagatattggaacc
ccggaagcctggagagtcatgatgtcattaaagtctggtctattggctgagagtacatgg
gccttagataccatcaacatcctactgtatgacgacagcagtatttccacctttgatctc
aacacgctgcctggcctactagagttggtggttgagtatttcaggcgctgcctcattgaa
atctttggtatcctgcgagagtatgaggtgggggaccctggccaaaggacactacttgat
cctgatgccttgaaacgagacttagacagcacggaagaagaggaaccacgggctgaggac
atggatcaggaggaagatgataatgacgaagaggaggaacgggaaatggagagcccagct
catgtgaaagaggaggaagttcaggagcagtgctctgtgtctcggggtcgagatgagaac
gcaggagatgaggacaggaagagcaagggttcatctgaacagacgggttcatcgcaaccc
ttacctgcccatgagagaccaaagcaggccagcaagtttgacaagtttcccttaaaggtg
gtacgaaagaaagacccattcgtggctggccaggccaataatcatggtaaactgcaggag
tttgacagtgggttacttcattggagtgctggagggggagactcaacagagcacattcag
acccacttcgaaccccacaaggacttcttggaaccacgagaacgaatacctgtgccccaa
gtgttgctgaggagacgagtaccagaagaagatttacgggaatattgtttcccgatggag
gaggagaaaaggaagcatcaggatgaagaagaagaagggccaaaagagacatcgtcctca
gaggaagcagcaacactagcaggtgcgtcagagaagtccagctccttacccaacactgag
gagaagaggaaaacagattctgagacaaagacagttgagaaaggtcctaagagtcaccag
gagaataacagacccattcctttcttcgggagtgctttaacccagcgggcacagccgacc
agcaccatcctggaggatgagcctcacagtaaagatgaagggccgctcattgctctggcc
aactggcaggattctttagcccggcgctgcatctgtatctccaatattgtccgcagcctc
tcctttgttccaggcaatgaccatgagatgtccaaacatccagggttgctactgctgctg
ggccgcctgatcctgctccaccacaggcaccctgagcgcaagcaggcgccactcacctac
gagaaagacgaggattcggatgaaggaatgggccaaagggatgaatggtggtgggactgc
ttggagctgctgagggagaacacactggtcactttggcgaacatctcaggccaactggac
ctctccatctaccctgagagcatctgcttgcctctattggacggtctccttcactgggct
gtctgcccctcagcagaagcccaggacccattccccaccctgggcccccacagtgctttg
tcacctcagagactggtcctggagacgctaagcaagctaagcatccaagacaacaatgtg
gacctcatcttggccactccaccattcagtcggttggagaagctatacgggaacctcgta
cggctaattggagacaggaaggttgcagtctgcagggagatggctgtggtcctactggcc
aacctggcccagggtgatactatggcagcacgagcagttgctgttcagaagggcagtgtg
ggcaacttgcttggcttcttggaggatagtcttgcagccacacagcttcagcagagccag
agctctctactacatctacaggggatgcacttcgagcccacaagcccggacatgatgcgg
cgagctgcccgggctctgcacgccttagccaaggtggaggacaaccactcggagttcaca
ctacatgagtcccgactcctcgacctttcagtgtctcccctaatgaactcgctggtttct
catgttatctgtgatgtactctttttgattggccagtcatga
DBGET
integrated database retrieval system
