Scomber scombrus (Atlantic mackerel): 133983376
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Entry
133983376 CDS
T10651
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssco00535
]
133983376 (col14a1a)
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Others
133983376 (col14a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
FN3_DSCAM-DSCAML_C
Fn3_PBP1
LED_rpt
VWA_3
Motif
Other DBs
NCBI-GeneID:
133983376
NCBI-ProteinID:
XP_062278428
LinkDB
All DBs
Position
7:complement(13443574..13585852)
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AA seq
2013 aa
AA seq
DB search
MYLEAAEMLETAKTLKAAEMLEAAETLETADILEAAEMLEAAETLEAAEMLETAETLEAA
ETLEAAETLEAAEILEAAEILEAAEMLEAAETLEAADILEVAEILEAAEMLEAAEGKGGA
EAQGPVDQSKLLVLRMLSTGQISWYLWAPLVLLALVSHFPSKAQGQVPAPRRLRFKELSA
SKLLVSWKEPKGDFDSYLFLYNSIPGGHQKEIIVSKSDSKVLITDYNPLKDYIVSVIAVS
GSQQSRPLKGRHKAQRGESDGRDKTEPQRLTDSVVHPEDANEISGVDQFVCHTEAIADIV
ILVDGSWSIGRLNFRLVRMFLENLVNAFDVGFDKTRIGLAQYSGDPRIEWHLNAFTTKDA
VIDAVKNLPYKGGNTLTGLALTYISENCFKPESGSRVGVPKIGILITDGKSQDDVIPPAE
SLRNAGIELFAIGVKNADENELRSIASEPQNTHVYNVADFNIMSSIVEGLTKTVCEQVEQ
QNKDMKQKQTPEMIGAPGDLLTSEVAARSFRVTWSHAPGNVEKYRVVYYPSQGGEPQEAV
VDGSETSVVLQHLSSLTEYQLAVFAVYANEASEALRGSETTLVLPTVTGLKLLDVTHSTI
KARWDSVKGVSGYMLLYAPLIDDGDLDEKEVKVSDAVIELELDGLTPNTDYTVTVYAMYG
DEASDPITSQETTLPLSPPSNLQFSDITHNSAHIRWDPVPRGVKGYRIMWIKTDELLTEE
VEVGPVNSYDLSELTSLMEYSVAISAVYDNGQSEPLTDGFTTTPVPGPLNLRSSDVSTDS
FQVSWDHSANDIILYKLSWAPFTGGDTKEVVLSGSDNRYILSALSPSTEYEVMLTAVFKD
ESESDTVSVIDTTLAEMTTIATTTTVARQAVRNLQLSDETTQSLEASWELEDPNVELYRV
SYAGLRGDHKEESVLVPGGLRRAVIQPLLSDTQYKVTVTPVYTDGQDGISVSALGATLPL
LSPGNIRVSEEWYNRFRVTWDPPQYPVLGYRIVYQPIYVPGPVLETTVGENLNTIILLNL
LSGTEYSVQVSASYTAGQSEPLLQNAKTLFLGVSGLSTYQVRPNSMCVQWQPLPHATLYR
VSIQSTLNGQKQEVSLGGGASRQCFYDLTPSSQYQSSVYTHMQEMEGPPVSITDMTLPAP
TQAPTEPPATEPPPTVPPAKEVCKEAKADLAFLVDGSWSIGDDNFMKITRFLYSTMGSLD
LIGPDGTQVAIAQFSDDARTEFQLSSHGNKEALLEAIQRIRYKGGNTKTGRAIKHVKESI
FTSEAGARRGVPKVLVVLTDGRSQDDVNKVSKEMQMDGYIIFAIGFADADYGELVNIASK
PSDRHVFFVDDLDAVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMEKFGLVEKEY
STIPGVSLEPGSFNSYPCYRLHRDALVSQPTKYLHPEGLPSDYTISMMLRLLPETPQEPF
ALWEILNKDNEPLVGIILDNSGKTLTFFNYNYKGDFQTVTFEGNEIKKIFHGSFHKLHVT
ISKTAVKVVLDCSVVGEKAISAAGNITTDGVEILGRMVRSRGQRDNSAPFQLQMFDIICS
TSWASRDKCCELPALRVEEQCPSLPHACTCSQDSKGPAGPPGPPGGPGIRGARGDRGEPG
VTGPQGPMGEIGSSGPPGPPGPQGPSGLSIQGPPGAAGEKGERGEIGPAGQMGVPGGSGS
PGRDGPPGARGLPGNSGPQGRQGPPGPIGSPGAPGASGPGGPSGTPGDQGLPGPAGTKGD
KGERGDVQSQTAVRAIARQVCEQLIQSHLSRYNSILNQIPVQSSVSVRTVPGPPGEPGRR
GLPGPQGEQGPAGRPGFPGTNGQNGRPGERGLSGEKGERGSPGVGNQGPRGPPGPPGSPG
EGRTGSQGPSGRPGNPGSPGRPGNPGTAGSAGPPGYCDQNSCLGYNVGVQPLPHGGYQPY
NPPYNQPYNPAAEEEEEDQENPYYRGYPPQYYPQQPSLLAHGRQGYRSSPTHSEDVELRS
PGVVRRFSRDVVVIEESKEAGLKRMKDGLTSSA
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atgtacctggaggctgcagagatgctggagactgcaaagacactcaaggctgcagagatg
ctggaggctgcagagactctggaaactgcagatatattggaggcagcagaaatgttggag
gctgcagagacactggaggctgcagaaatgttggagactgcagagactctggaggctgca
gagacgttggaggctgcagagacgttggaggctgcagagatactggaggctgcagagata
ctggaggctgcagagatgttggaggctgcagagacgttggaggctgcagacatactggag
gttgcagagatactggaggctgcagagatgctggaggctgcagagggtaaagggggtgca
gaggcacagggacctgttgaccagtctaagctgctggttttgaggatgttgtctacagga
cagatcagctggtatttgtgggctccactggtgttactggccctagtttcccatttcccc
agtaaggcacagggtcaagttccagctccgaggaggcttcgtttcaaagagctgagtgca
agcaaactgcttgtttcatggaaggagcctaaaggagactttgacagctatctgttcctc
tacaacagcattccaggtggtcatcagaaggagataatagtatctaaatctgacagcaag
gtgttgataacagactacaacccccttaaagactacatcgtcagtgtcattgctgtcagc
gggagccagcagagtagaccactaaagggcagacataaagctcaaagaggtgagagtgat
ggaagagacaagactgaaccccagaggctgactgattcagttgtacatcctgaagatgcc
aacgagatctctggagttgatcagtttgtttgccacactgaggctatagcagacatcgtg
atcctggtggacggctcctggagtatcggccggctcaactttcggctggttcgcatgttc
ctggaaaacctggttaatgcctttgatgttggttttgataagacaaggataggtctggct
cagtacagtggtgatccccggatagagtggcatctaaatgcttttactacgaaagatgct
gtcattgatgctgtcaagaaccttccttacaaaggaggaaacaccctcacaggcctcgca
ttgacctatatctctgagaactgtttcaagcctgagtctggctcacgggttggtgtacca
aagattgggatcctcattacggatggcaagtctcaggatgatgttataccccctgcagag
agcctgcgaaatgccggcatcgagctgtttgccatcggtgtaaagaatgctgatgagaat
gagctgcgctccatcgcctccgaaccacaaaacactcatgtctataatgtggccgacttc
aacatcatgagctccatcgtcgagggactgaccaaaacagtgtgtgaacaagtggagcag
caaaataaggacatgaagcagaagcagacaccagagatgataggggcgcctggtgatctg
ctgacatcagaggttgcggcccgaagctttcgagttacatggagccacgccccaggaaac
gtagagaaatacagagtggtttattatccttcgcagggaggagaaccacaggaggctgtc
gtagacgggagtgagacttcagtggtgctgcagcatctcagctctctcactgaataccag
ctggctgtgtttgctgtgtatgcaaacgaggcaagtgaagctctgagaggatcagaaaca
accctggttcttcctacagtgacgggcctcaagctgttggatgtgactcacagcaccata
aaagcaagatgggacagtgtgaaaggagtatctggctacatgttgctgtatgcacctcta
atagatgatggagacttggatgagaaagaggtgaaggtatcagatgctgtgatagagctg
gagctggatgggctgacccctaacactgactacactgttactgtttatgcaatgtatgga
gatgaggccagtgaccccattacaagccaggaaactacattaccactaagccctcccagc
aaccttcagttctccgacatcacacacaactccgcccacatcagatgggaccccgtgccc
agaggagttaaaggttatcgcatcatgtggatcaagacagatgaactactcacagaggag
gtggaggtgggtccagtgaactcttatgatctcagtgagctgacatcgctgatggagtac
tcagtggccatctctgctgtgtacgacaatggccaatcggagccgctcactgatggattc
actaccactccagtccctggtcctctgaatctccgctccagtgatgtcagtacggacagc
ttccaggtcagctgggatcactcagctaatgacatcattctctataaactctcctgggca
ccgttcacaggcggcgacacaaaggaggtggtcttgagtggaagtgataatagatacatc
ctgagtgcactgagtccctctactgagtatgaagttatgttgacagccgtattcaaagac
gaatcagagagtgacaccgtctctgtcatcgataccacattggctgagatgacaacgatt
gctaccacaaccacagtggcacgccaggcagtgagaaaccttcagctgagtgatgagacc
acccagagtttagaggcatcatgggagctggaagaccctaacgtggagctgtacagggtg
tcctatgccggcctcaggggcgatcacaaagaggagtctgtgttagttcctggcggtctg
aggagagcagtgatccagcctttactatcagacacccagtacaaagtgacagtcacaccg
gtttacactgacggacaagatggcatcagtgtttctgccctgggcgccacattgcccctc
ttgtctcctggaaacatacgtgtgtcagaagagtggtacaaccgcttcagggtcacctgg
gatcctcctcagtatcctgttttgggttacaggatcgtctaccagcccatctatgttccg
gggccagttttggagacaacagtaggcgagaatttgaacaccatcatcctccttaatcta
ctgagtgggaccgagtacagtgtccaagtatcggcttcctacactgcaggacaaagtgaa
ccactgctacagaatgctaagacattgttcctgggtgtctctggcttgtcaacctaccag
gtgcgtcccaacagcatgtgtgtccagtggcagcctctcccacatgctacattatacaga
gtctccatacagtctacactcaatggccaaaagcaggaagtgagcctgggaggcggggct
tcccgacaatgcttctatgatcttactcccagcagccaataccagagcagtgtttacacc
catatgcaggaaatggagggccctcctgtctccatcactgacatgacactgccagcaccc
actcaggctccgactgaaccccctgccacagagccccctcccaccgtcccgcctgctaaa
gaagtgtgtaaggaggccaaggctgacctggcattcctggtcgatggttcttggtccatc
ggagatgataacttcatgaagattacacgtttcctctacagcaccatgggatcactggat
ctgattggaccagacggcacccaggtggccattgctcagttcagcgacgatgctcggaca
gaattccagctgagttcccatggcaacaaggaagcgctgctggaggctattcagaggatc
agatataagggaggaaacactaagacaggtcgagccatcaaacatgtgaaagagtcaatt
ttcacgtcagaggccggagccagacgaggagttccgaaggtcctggttgtcctcactgat
ggccgctcacaagatgacgtcaacaaagtctccaaggaaatgcagatggatggctatatc
atctttgcaattggatttgcggatgcggattatggggaactggtaaatatagccagtaag
cccagtgatagacatgtcttctttgtggacgatttggatgctgtgaagaaaatagaagaa
cagctcattacctttgtgtgcgaggctgccactgccacttgtccatctgttttgatgagt
ggtaacacaatggcaggcttccgtatgatggagaagtttggcctggtggaaaaggagtat
agcaccatacctggagtttctcttgagccaggctcgttcaacagttacccctgttacagg
ttacaccgtgacgcactggtgtcacagcccactaagtatcttcatcctgaaggtttaccc
tccgactataccatttctatgatgctccgcctgcttcctgagactccacaggagcccttt
gcattgtgggaaatcctcaataaggacaatgagccattggtgggaataatcctggataac
tctggaaagaccttaacgttcttcaactacaactacaaaggtgattttcagacagtcacc
tttgaaggaaatgaaatcaaaaaaatcttccatggcagtttccacaagctccatgtgacc
atcagcaagacagctgtgaaggtggtgttagactgctccgtcgtcggggagaaagctatc
agtgcagctggtaacatcaccacagatggtgtggagatcctgggacggatggtgcggtcc
agaggccaacgggacaactctgctccattccagctccagatgtttgatatcatctgcagc
acatcctgggccagcagagataagtgttgtgaactgccagcattgagagttgaagagcag
tgcccttctttgcctcatgcctgtacctgttcccaggacagcaagggacctgcaggacca
cccggacctcctggcggtccaggcataaggggagccagaggagacagaggagagccagga
gtgacgggacctcaagggccaatgggagagattggctcttctggacccccgggaccgcct
ggtcctcagggacccagcgggctctctattcagggccctccgggtgctgctggggaaaag
ggagagagaggagagataggtccagctggacagatgggtgtccctggaggttcgggctcc
cctggcagagatggccccccaggagcaaggggtctgccgggtaatagtggaccacaggga
cgacagggacctcctggacccattggatccccgggagcacctggagcttcaggaccaggt
gggccatcggggactccaggggatcaaggacttccaggtcctgctggtaccaaaggagat
aagggagaaagaggtgatgtgcagtcccaaactgcagtgcgtgcaattgcacggcaagta
tgtgaacagctcatccagagccacttgtctcgctataactccatcctgaaccagatcccc
gtccagtcttcagtgtcggtccgaacagtacctggaccaccaggagagccaggtcgaaga
ggcctcccgggacctcaaggcgagcaaggtcctgcaggcagaccaggtttccctggtacc
aacggccagaacggacgaccaggagagagaggactgtcaggagagaagggggagaggggg
agtccaggtgttgggaatcagggacctcgaggaccacccggacctccaggctcgccaggt
gaaggacgaacaggcagccagggccctagtggtcggcctggtaacccagggtcgccaggg
agaccggggaatccgggtaccgctggatcagcaggcccaccaggatactgtgaccagaac
tcatgtctgggatacaacgttggagtccaaccgctgcctcacggtggctaccagccctac
aatccgccctacaaccagccatacaaccctgctgcagaggaggaagaggaggaccaggag
aacccctattatcgcggttacccacctcagtactacccccaacagccctccctgctggct
cacggtcgccaaggttatcgctcgagccccacccactctgaggacgtagagctgaggtcg
ccgggcgtcgtcaggaggttttcgcgtgatgtagtcgttatagaggagagcaaggaggca
ggacttaagaggatgaaggatggactcacctcaagtgcttga
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integrated database retrieval system
