Scomber scombrus (Atlantic mackerel): 133983405
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Entry
133983405 CDS
T10651
Symbol
tnxba
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133983405 (tnxba)
04518 Integrin signaling
133983405 (tnxba)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133983405 (tnxba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133983405 (tnxba)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133983405 (tnxba)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fibrinogen_C
fn3
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_2nd
EGF_Teneurin
Fn3_Dep-1_3rd
EGF_TEN
EGF_2
IL27RA_FN3_3
Motif
Other DBs
NCBI-GeneID:
133983405
NCBI-ProteinID:
XP_062278460
LinkDB
All DBs
Position
7:complement(15191748..15196611)
Genome browser
AA seq
980 aa
AA seq
DB search
MTHKISLLPGGCTGGCEAEMAALKGRVARLEREMSNLKEKCPCSPTCSNDCSGNGECQKG
KCVCRKGFLGPDCSKCADGAECSKKSAKGKVNKDSNVIKENMQEKPTKVELTLFEKRDQK
KGIQAKETDAKPKVATIAKTGLVKTQAKLDVSVKKITLKGSSSATKTIRPTVGQVLLKHE
GRKQEEARKGKTTVLTSKKVLQKTDHKLVKEGTESKSFPKSNQLKDEPHTNVTQSNVKKL
NGTTRIVTVLSKVLAVNKTRTGKESIEQSTLAEKNVTQSFGPKHIKKVKVETENVQSADN
RNTEAGKIGKGRVTPKSQYIVNSTNTETSDEARVLQNKTNTHVSGMSTRRMGGSGLGSVK
VVNISSYSFTVTWSAPQGMFKNFTVVRREPRTEGDEDEYEEFEEEALEGEKVSTAKNTTE
FQVHSESMNMTASSGKVVVSRGRVETKRINMVVPGNVRSVEFSNLRANTRYVLYIYGTAA
ERRSKIHRVIATTGPEPATEMVFSNVTESSVTVSWSKPKTAITGFRITYTHIVTGESRAM
SVDSKQSHVVLSSLSAGFSYMIAVFSTQGRAQSDALTSTITTVPAAPTHLQAINVTDTRA
VLQWTPSLGKVDRFIISYESSKTPNVTVTVMLSGNSVEHQLRGLQRGTLYTVKVLSQKDS
LQNTAISTTFTTANVVKASEVGPRSALIVWKTSTVVYHSYRVIYQVVGEETKELILEPTI
TEYKLTGLLPMSRYIVLVQGERNGHYTPIVTTEFLTGKVRFPFPTECSQELLNGALQSGE
VNIYPQGREGQAVRVYCDMETDGGGWTVFQRRMNGKTDFYRTWSEYRVGFGNLSEEFWLG
NELLHNLTRIGPVSLRVDMQSGNDTAYAHYANFSIDSEERLYTLTVSGYTGTAGDSMRYH
NGRPFSARDKDPDSLGIHCAKAYMGGWWYKNCYKTNLNGLYGTNSNNQGVVWIDWKGKDS
SIPFTEMKFRPSRFSPATHG
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacaagatcagtttgttgcctggtggatgcaccgggggatgtgaggctgagatg
gctgcattgaaaggacgcgtggcccgactggagagagagatgtccaacctgaaagagaaa
tgtccatgttctccaacatgttcaaatgactgtagtggcaatggggaatgtcagaaggga
aaatgtgtctgccgaaagggatttctgggtccagactgcagtaagtgtgctgatggagca
gagtgtagtaaaaaatctgccaaagggaaggtgaacaaagacagcaatgtcatcaaggaa
aacatgcaggaaaaacccaccaaagtagagctcacactctttgagaagagggaccaaaag
aaggggattcaggccaaagagactgatgccaaacccaaagtagccactattgctaaaaca
ggtcttgttaaaacacaagcaaaactagatgtttctgttaagaaaataactctaaaaggt
tcttcaagtgccacaaagaccattcgccccaccgttggtcaagttctgttgaaacatgag
gggagaaagcaagaggaggcccgcaaaggcaaaactacagtcctgacctctaaaaaggtc
ctccaaaaaactgaccacaagctagtaaaggaaggaactgagagcaaatcatttcctaaa
tctaatcaactaaaagatgaacctcacactaatgtaacccagagtaatgtaaagaagttg
aatggtacgactagaattgtaactgttctatcaaaggttttggcagtaaataaaaccaga
acagggaaggaaagcattgagcaatccacactggctgaaaagaacgttactcaatccttt
ggaccaaaacacatcaagaaggtcaaagtagaaactgaaaatgtgcaatctgctgacaac
agaaacacggaagctggaaagattggaaaaggaagagttacaccgaaaagtcagtatata
gtgaattcaaccaacacagaaacttcagatgaggctcgggttctgcagaacaaaactaat
acccatgtctctggcatgagcaccagaaggatgggaggatctggattaggttctgtgaag
gttgtgaacatctcctcctacagcttcactgtcacatggtcagcaccacaaggaatgttc
aagaacttcactgtggtaagaagagagcctcgaacagagggtgacgaagacgaatatgag
gagtttgaagaggaagctcttgaaggagaaaaggtgtccacagctaaaaacacaacagaa
ttccaggtacacagcgagagcatgaacatgactgcttcctctggtaaagttgttgtatca
agaggtagagttgagaccaagaggatcaatatggtggtccctggcaacgtacgttctgtt
gagtttagtaacctacgggcaaacacacgctacgtcctgtacatatatggtacagctgct
gagaggagatcaaaaattcacagagttatcgcaactacaggtcctgagccagccacagag
atggttttcagcaatgtaactgagtcctctgtcactgtgtcctggtccaaaccaaagact
gccatcacaggcttcaggatcacatacactcacattgtcacaggggagagtcgggctatg
agtgttgactctaagcagtcacatgtggttctgtccagtctgtctgctgggttctcctac
atgatcgcagtattctctacacaaggtagagcccagagtgatgccctcacctccaccatc
accacagtgcctgcggctcctacacatctccaagccatcaatgtgacagataccagagct
gtgctgcaatggactcccagtttagggaaagtagaccgctttatcatcagctatgagtcc
tccaagactcctaatgtgacagtgacagtgatgctgtctggaaactcagtggagcaccag
ctgagaggcctgcagagaggcaccctgtacacagtcaaagtcctgagccagaaggacagt
ctccagaatacagccatttcaactacatttactactgctaatgtggttaaagccagtgag
gttggtcctcgttctgcactgatagtgtggaaaacatccactgttgtctatcacagctac
agagtgatctaccaggtggtaggagaggaaacaaaagagttgatcctggagcccaccatt
acagagtataaactcaccgggctgttgcctatgtcacgctatattgttctggtacaaggc
gagagaaatggacactacacacctattgtcaccacagaattccttacagggaaagtgcgt
tttcctttccccactgagtgctcacaggagctgctgaacggagctctgcagtcaggagag
gtgaatatctacccgcaaggtagagagggacaagcagtcagagtctactgtgacatggag
actgatggaggtggctggacggtgttccaaaggaggatgaatggaaagactgatttctac
agaacctggagtgaatacagggttggttttgggaacctcagtgaagagttctggcttgga
aatgaactgctgcacaacctgaccagaattggccctgtgagtctgagagtggacatgcaa
tctggaaatgatactgcttacgctcactatgccaacttctccattgattcagaggagagg
ctctacaccctcacagtgtctggctacacaggaacagcaggtgactcgatgaggtaccat
aatggtcgcccattctcagctcgggacaaggaccctgattctttggggatccactgtgcc
aaggcctacatgggaggctggtggtacaagaactgctacaagaccaacctcaatggtctt
tatggcacaaacagtaataatcagggagtagtctggattgactggaaaggtaaagactcc
tccattccattcactgaaatgaagttcagaccgtccaggttctctcctgcgactcatggc
taa
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