Scomber scombrus (Atlantic mackerel): 133983445
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Entry
133983445 CDS
T10651
Symbol
cdh17
Name
(RefSeq) cadherin-17
KO
K06811
cadherin 17, LI cadherin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133983445 (cdh17)
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Major cadherins
133983445 (cdh17)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
RET_CLD1
Cadherin_4
Cadherin_2
Fibulin_C
RibLong
Motif
Other DBs
NCBI-GeneID:
133983445
NCBI-ProteinID:
XP_062278507
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All DBs
Position
7:complement(17133355..17145850)
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AA seq
868 aa
AA seq
DB search
MTPKVHLLLLPLLFSIAGGIGLEDKKGLFKDMELTVQEETPVPYAMFQFEVTQGSVNNFR
LSGENSDAIKISKDGWLYLDAPLKWSENNLFNIKVEALADDEVVEGPIHVALKVLDINNN
APYFNQSVYSAMVKENNPAGVPFTRVFASDQDDPETPNAHLMYSLVSQTPSRQSTPLFQI
DPNTGEISTTKEGEKMLKARDAFQYGRGQDQSIDALKTRFNDYCPEQGIPFEENPFFTCV
QRSEMRRQNVDPLNDPDYTLFVRVQDQGGATQTALSGNTRVQIVIKQNLWVNPGPILVKE
NLKAAYPHVIAKVQSNDPNAVYRLVQKERELKFPFQITVDGEIQLTEDLDREEKGQYIMV
VLAEDEGHNQVDPPMEIQVIVEDVNDNMPVCEENVFEVQEDEPAGSLVNKLVAHDDDQEG
TVNSLLMYAIESQEPSSTPTAFSIDAASGEIKTLRLLRRRDQQVYNLNVRVNDLEFSTVC
KVVIKVIDVNNEIPKFEKNDYGSLTLQEDTAVGHTVLTIKATDADDPDSGSSFINFQIRG
DNDDVFTVETDGKGVGHVVIAKPLDFESTFTYNLQIDARNPEPLMKGIEYGIESTASVTV
SVTDVDEAPEFSLDILDVTVPENTTKGTVLLTVEAKDPEGKAISFKLDGDTQGWLEINAA
TGEIKTKDKLDRETLEAFEVIVIAFEKEHPEKSAERTVSVRLLDVNDNVPKLKENQAFIC
VVKPEPVIIKAHDADSPPFSQPFIFSLAHGKKSPNWNLQTIDGTTAKLTLKKTPTEDKTF
IIPINVKDNAGMGITHSFEVRVCNCTELGYCYVAPAEHSFKYGMGTTIGILAGTIGFCII
AFIIVVKRSNKGGKRTALTEDGERNPMM
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgacacccaaggtgcatctgttgttgctcccactcctgttcagcattgctggcgggata
ggtctggaggacaagaagggcctgtttaaggacatggagctgactgtgcaagaggagaca
ccagtgccctatgccatgtttcagtttgaggtgacccaaggaagtgtgaataatttcagg
cttagtggagaaaacagtgatgccatcaagatctcaaaggatgggtggctctacctggat
gcgcctctgaagtggtcagaaaataaccttttcaacattaaggtggaagctttggcagat
gatgaggtagtggagggtccaattcatgtggcccttaaagtgttggacatcaacaacaac
gctccgtacttcaaccagagtgtctattcagctatggttaaagaaaataatccagcaggt
gtcccatttacccgcgtgtttgcgtcggatcaggacgaccctgaaactccaaacgctcat
ctgatgtacagcctggtcagtcagacccccagcagacaaagcactcccctgttccagata
gaccccaacactggagagatctccaccacaaaagaaggagaaaagatgctgaaggccaga
gatgctttccagtatggcagaggacaggatcagagcatcgatgctctgaagacaaggttt
aacgactactgtcccgagcaagggatcccctttgaagaaaaccccttcttcacctgtgtg
cagagatcagagatgaggaggcagaacgtggaccccctgaatgatccagattacacccta
tttgtgcgcgtgcaggaccagggaggagcgacacagactgcgctgagtggaaacaccaga
gttcaaatcgttataaagcaaaacctttgggttaaccctggacccatattagttaaagag
aacttaaaggctgcttatcctcatgtcatcgcaaaggtccagtctaatgatcccaacgcc
gtctacaggttagtccagaaagagcgagagctgaaattccccttccagatcacagtagat
ggagaaatccagctgacagaggatctggacagagaggagaagggccagtacatcatggtg
gtgttggcagaggatgagggtcacaaccaagtggatccacccatggagattcaagttatc
gtggaggatgtgaacgacaacatgccagtatgtgaggagaatgtgtttgaagtgcaggag
gatgagcctgcaggcagcctggttaataagctggtggctcatgacgatgatcaagaaggc
acagttaattctctgctgatgtatgccatcgagtcccaagagccatccagcacacccacg
gccttctccatcgatgctgcttctggagaaattaagacattgcgcttgcttagacgaagg
gaccagcaggtgtataacctcaatgtcagagtcaacgacctagagttcagcacagtatgt
aaggtcgtcatcaaagtcattgacgtcaacaacgagattcctaagtttgagaagaatgat
tatggcagcctcactctacaggaggacacagctgtgggacacacagtgcttaccatcaaa
gccacagatgctgatgacccagacagcggcagctcctttattaatttccagatccgtggc
gacaatgatgacgttttcactgtggaaacagacggcaaaggtgtcggtcatgtggtcata
gctaagcctctggatttcgagtccactttcacctacaatctccagattgatgctcgtaac
cctgagcctctgatgaaaggtattgagtacggcatagaatccacagcctccgtcactgtg
tctgtcactgatgtagatgaggccccagaattcagcctggacatcctggatgtgactgta
cctgaaaacaccaccaagggaactgtgctgcttactgtggaggcaaaggacccagaaggc
aaagcgatcagttttaagttggatggtgacactcaaggctggctggagatcaatgctgcc
acaggagagatcaagaccaaagacaagctggacagagaaaccctggaggcctttgaagtc
atcgtcattgcctttgaaaaagaacacccagagaaatcagctgagcgcactgtgtctgtg
aggctgctggatgtgaatgacaatgtccccaaactgaaggagaaccaggccttcatttgc
gtagtgaagcctgaacctgtcatcatcaaggcccacgatgcagacagcccccccttctct
cagcctttcatcttctccttggcccacggcaagaaatcccccaactggaacctgcaaact
attgatggaacaacggcgaaactgaccctgaagaaaacaccaactgaggataaaaccttc
ataatccccattaacgttaaagataacgcaggcatgggaatcacacatagctttgaggtg
agggtatgtaactgcacagagctaggctactgctacgtcgcaccagctgaacacagtttc
aaatacgggatgggaaccaccattgggatccttgctggcactataggattctgcataatt
gccttcatcattgtggtgaaacgctcaaataaaggaggcaagaggacagctctgactgaa
gacggggagaggaaccccatgatgtag
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