Scomber scombrus (Atlantic mackerel): 133983510
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Entry
133983510 CDS
T10651
Name
(RefSeq) DENN domain-containing protein 3-like
KO
K20162
DENN domain-containing protein 3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133983510
Membrane trafficking [BR:
ssco04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133983510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
WDR55
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
uDENN
WD40_2
Beta-prop_EML_2
Beta-prop_WDR75_1st
DUF5074
dDENN
WD40
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
133983510
NCBI-ProteinID:
XP_062278591
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All DBs
Position
7:complement(16571693..16588675)
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AA seq
1259 aa
AA seq
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MADHLPPALLEACVVVGASSEKLKEVYQSTHNGALEHLLLEPEVLHVLAPPFVGRSQADS
EVMKSHGKRRRSFLRKKREPPPSAAAIPIQGASEGRGGIEDVSLPKDIDLMALPQLCFPG
GLQITNEQRDEEFHFLVFTDVFGNKTHGVVMQCYWPIPEGTSLFSAYSFCVISKYPYFTA
LKDCLSCLLIQLRTCRLSDMEEIVKDFAAKLALVPIPPPGQLHLMFTLRPLTIVLPSRQD
KDHPAVDLDLHLPFLCFRPQPLLQVLSCLLQEQRVVLFSANWARLTLVAESLLLFLQPLS
WQHPYVPVLARGMLDFLMAPTAFLMGCHLSHYEEVAAETDDLILINIDNGSISTSCSETI
DLPDIPLPAADCFTQRCQSLLIHFELDQCRIATCTDINEQRAQKRAWQQSLNGDIQRITL
ELIVNIFRGVKSHLNYEHRVFNSEEFLKTREPAEQLFYKKVLETHIFHFFLKDRLNRKMD
NFTRMELSTRSEMQKMKAKVEVPRRPTMQEIQARKTNSITENKLNKRLGMSLPNLGVDQT
ISFQRHTLLTRIIMSDPALRMPPKPIKVFKLPDFPASLSLHSVQSYYSELIQQLSKAMFS
VQNENSTLLARYYYLRGFINTLCSRRLDALSDFQNLYKTDTAIFPTQLVTWLVESLHRDE
RRQADRRPELKRLILKVNTENEKPLVKPDDHVKKFALPRKRLHQEEFVRCVQECGIVKDI
ATIHRLFDALTDSQQKEVDPELFRVFYTFWKETEVEAQDVNLPAEVIDHLDNSECVYKLS
SCVKTSHGVGKIAMTQKRLFLLTEGRPGFLEITKFRDIQEVRITSAPFLLVRIPSLRIHT
SGRTEVFEANLKTETELWNLVVKEMWAGRKMADQHKDPQYMTQALTNILLMDAVIGCLQT
QRSISAASKLAYFDKIKYEVPMMVPKTTSETLKHKINPSLDLAEPQTVHVLLYTPGQLTC
NDSEGEMNPKLWVALSGGRVVVFDAASWSMLQDSIHVGESQLNCMLGLVQEQVWIGSQDS
VIYIIDTHSMTCNKQLTEHRHEVTGLTVDTRDQHNGQQTYSCSCDGTILQWDSYSLKVKR
QFHLSCDHLSSIQIHDGKLWCCCGDSIVELKKSGTPQRRMTLPDDLRSMLSSFSSFIVIP
ERGQLWTGCADSGELCLWHTSNHRRPFKRISLTGSSGVTCMIRVKDQIWVGCRGGSGIGG
ECDGQLRSQVLVVDPESHTVAKELQAHSDSVQTLCSAEDRYVLSGSARLDGKIAIWKVE
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccatctgcctcctgctctgctggaagcctgcgtggtggtaggagcatctagt
gagaaacttaaggaggtgtaccagtcaactcataatggagctctggagcacctcctgttg
gagccagaggtactgcatgtcctggcacctcccttcgttggcagatcgcaagctgatagt
gaagtgatgaagtcacatgggaagaggcgacgctccttccttaggaagaagagggagcca
cctccttcggctgcagcaatccccattcaaggagcatcagaaggtagaggaggaattgaa
gatgtcagtcttcccaaagatatcgacctcatggctctgcctcaactctgctttcctggt
gggctacaaataaccaatgaacagagagatgaagagtttcacttcctggtttttactgac
gtttttggcaacaagacccatggagtagtaatgcagtgttactggccgataccggaaggg
acatctttgttctctgcttacagtttctgcgtcatatccaagtatccttacttcacagca
ctgaaagactgtctgtcatgtctgttaatccagctgagaacatgtcgtttatcagacatg
gaggagatagtgaaggattttgcagccaagttggcactggtgcctatcccccctcctgga
caactacatttgatgtttactttacgtcctctgaccattgtattaccatccagacaagac
aaagaccacccagctgtagatttagaccttcatctgcctttcctctgctttaggccacag
ccactccttcaggtgttatcttgtctcctccaggaacagcgggtggtgttattttctgct
aattgggccagactaacgctggtggcagaaagcttgttgctctttctgcagcctctgtca
tggcagcatccttatgttcctgtcctggccagaggcatgctggactttctcatggctcca
actgctttcctcatgggctgccatctcagccattatgaagaggttgctgctgaaacagat
gatctaatccttatcaacattgataatggaagcatcagtacttcttgttctgagactatt
gacctaccagatatccccttgcctgctgcagactgcttcacacagaggtgccagtctctg
cttatacattttgaactggatcagtgccgaattgcaacctgcactgacatcaatgagcag
agggcacagaaaagagcgtggcaacaaagcctcaacggcgacatccagaggatcacgctg
gaactgatagtcaacatattcaggggtgttaaaagccatctgaactatgagcacagagtg
tttaacagtgaggagttcctgaaaaccagagagccagctgagcaacttttttacaagaag
gttttggagacacacatcttccatttcttcctcaaggaccgtctgaacaggaaaatggac
aatttcactcgcatggaactcagcactcgttctgagatgcagaagatgaaagcaaaggtt
gaagtcccacgcagacccaccatgcaagagattcaagcccggaaaacgaactccattaca
gagaacaaactgaacaagaggctggggatgagcctcccaaacctgggagttgaccaaact
atcagcttccaaagacacacactgctgaccaggatcatcatgtctgaccctgcattgaga
atgcctcctaagcccataaaggtgtttaagctcccagactttccagcttctctgtccctc
cactctgtccaaagttattacagtgagctgatccagcagctcagcaaggctatgttctcc
gtccaaaatgagaactcaactctgctggccagatactactacctgcgtggtttcatcaac
acgctatgctcacggcgcctggatgctctgagtgatttccagaacctctataagacagac
accgccatcttccccacacagctagtcacatggcttgtggagtcgctgcaccgagacgag
agacggcaagctgacagacgacctgaactcaagagactcatcctcaaagtgaacacagaa
aacgagaagccgctggtgaagcctgatgaccatgttaaaaaatttgcacttccacgaaaa
cgtttacatcaagaagagtttgtgcgttgcgtccaagagtgcgggattgttaaggatata
gcgaccatacatcgtttatttgatgctctcactgacagccagcaaaaagaggtggaccct
gagctcttcagagtcttctacaccttctggaaggaaactgaggttgaagcacaagacgtc
aacctacccgctgaggtcattgaccatcttgacaatagcgagtgtgtctacaagttgtcg
tcctgtgtgaagacctctcatggtgttggtaaaatcgccatgacgcagaaacgtctgttt
ttgcttacagagggaaggccaggcttcctggaaatcacaaagttcagagacatacaggag
gtgaggattacctcagctccctttctgctggttcgtattccctcccttcgtatccacacc
tctggcaggactgaggtgtttgaggccaacctgaaaacggagactgaactctggaatctt
gtggtcaaagagatgtgggctggacgcaagatggccgaccaacacaaggaccctcagtac
atgacccaggctctgaccaacatcttgttaatggatgctgtcataggctgcctgcagacc
cagaggtccatcagcgctgcctcaaagctggcctactttgacaagatcaaatatgaagtg
ccgatgatggtgcctaaaactacatcagagaccctaaaacacaagatcaacccctccctg
gacctagctgaacctcagactgtacatgtgctgctatacacaccaggtcagttgacttgc
aatgactcagagggtgagatgaacccgaagctgtgggtggctctcagtgggggcagagtg
gttgtattcgatgcagcaagctggtccatgctgcaggactccatccatgtcggagagtca
cagctgaactgtatgctgggattggtccaggagcaggtgtggatcggctcccaggactca
gtgatctacatcatagacactcacagcatgacctgcaacaaacagctgacagagcacaga
catgaagtgactggactcacagtggacactagagatcaacataacggtcagcagacctac
tcctgcagctgtgacgggacaattctgcagtgggactcatacagtcttaaagtgaagcga
cagttccacctcagctgtgatcatctctcctccatacagatccacgatggcaaactgtgg
tgctgttgtggtgatagcattgtggaactgaaaaagagtggaacaccacaaaggaggatg
acacttcctgacgacctacggagcatgctcagtagcttcagcagctttatcgtcatccca
gagcgaggtcagctgtggacaggatgtgctgactcaggtgagctgtgtctctggcacact
agcaaccacagacgtcccttcaagagaatctccctgacaggcagttcaggagtcacctgt
atgattcgagtcaaggatcagatttgggtgggctgtcgtggtggaagcggtatcggaggt
gagtgtgacggtcagctgagaagtcaggtgttagtggtggacccagagagccacactgtg
gcaaaagagctacaggctcattcagacagcgtccagacactctgctctgctgaggatcgc
tatgtcctgagcggctccgcacgacttgatggcaaaattgccatctggaaagttgagtaa
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