Scomber scombrus (Atlantic mackerel): 133983533
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Entry
133983533 CDS
T10651
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssco03016
]
133983533 (cdkal1)
Enzymes [BR:
ssco01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
133983533 (cdkal1)
Transfer RNA biogenesis [BR:
ssco03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
133983533 (cdkal1)
Prokaryotic type
Methylthiotransferases
133983533 (cdkal1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
133983533
NCBI-ProteinID:
XP_062278627
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Position
7:complement(12559231..12811254)
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AA seq
565 aa
AA seq
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MPSACDSMIEDIEDMVSSSDPTPHERQSARKSIIPRSRKKKEILVNEELQADSFIPGTQK
VWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPSEADLWLLNSCTVKNPAEDHFRNSIKK
AHEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDYLKERVPGVTIATDIICG
FPGETEEDFQETIDLVKCYRFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSQLFH
SYNPYDHKVGERQHALVTEESFDAQYYVAHNKFYEQVLVPKRSEFKGKMIEVDIYEAGKH
FLKGQPVEDSKPFTPSIAAPLEKGEVSGLMQEKMANGVHGSASMSSSSVLLMGSCSLDRE
VLKKLGVGLALAAALLAFIVEKLYW
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgccatcagcctgtgactccatgattgaagacattgaggacatggtgtcctccagcgac
cccactcctcatgagaggcagtctgctagaaagagtatcataccgaggtcaagaaagaaa
aaggagattctggtcaatgaggagctccaagctgacagttttatccctggcactcagaaa
gtctggatgaaaacgtggggctgcagtcataacaactcagatggagagtacatggctgga
cagctagctgccagtggatacaagatgactgatgacccatcagaagcagacctgtggttg
ctgaacagctgcactgtgaaaaaccctgcagaggaccacttcagaaactcaatcaaaaaa
gcccatgagcaagacaaaaaggtggtagtagcaggttgtgttccccaggcccagccacgg
atggactacctcaaagggctcagcatcataggggttcaacagattgatcgagtggtggaa
gtagtggacgaagctgttaaaggtcactcagttcgtctgttgggtcagaagaaagatgga
ggccggagactcggaggagccagactggacctgcccaagatcaggaagaaccctctaatt
gaaatcatctccattaacactgggtgtctgaatgcatgtacctactgtaagaccaagcac
gccagaggtgacctggccagctatcccgtagaagagctggtggagagagccaggcagtct
ttccaggagggagtgtgtgagatctggttgaccagtgaagacacaggagcctatggtaga
gacatcggcacagacctgcccacactgctgtggagactggtggaggagatccctgaagga
gccatgctcaggctgggtatgaccaacccaccttatatcctggaacacctggaggagatg
gcaaagatattgaatcatccgcgtgtctacgccttccttcatgttcctgtgcagtcggct
tcagacagcgtcctgatggacatgaagagagagtattgcattgatgacttcaaaagagtg
gtggactacctcaaagaaagggtcccaggtgtaaccatcgctacagatataatctgcggt
tttcctggtgaaacggaggaagatttccaagagacaatagacttggtgaaatgttaccgg
ttccccagtctcttcatcaaccagttctaccccagacctggtacaccagcagccaaaatg
gagcaagtaccagcgcatgtgaaaaagcaaaggactaaggagctgtcacaactcttccac
tcttacaacccctatgaccacaaggtaggtgagaggcaacatgcgttggtgacagaggag
tcgtttgatgcccagtactacgtggctcataacaagttctatgaacaggtgcttgtaccc
aagaggtcagaattcaaagggaagatgattgaagtggacatctacgaggcaggaaaacac
ttcctaaaaggccaaccagtagaagacagtaaacctttcactccatccattgctgcacca
cttgagaaaggagaggtgtccggcctgatgcaggaaaagatggccaacggtgtccatggt
tctgcctctatgtcatcctcatcggtcttgttgatggggtcttgcagtctggacagggaa
gtattgaagaagctgggagttgggctcgcattggcagcagccttattggctttcattgtg
gagaaactgtactggtag
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