Scomber scombrus (Atlantic mackerel): 133983603
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Entry
133983603 CDS
T10651
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133983603 (dhx38)
Spliceosome [BR:
ssco03041
]
Complex C
Other components
Step II factors
133983603 (dhx38)
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GFIT
Other DBs
NCBI-GeneID:
133983603
NCBI-ProteinID:
XP_062278730
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Position
1:complement(20154363..20173079)
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AA seq
1254 aa
AA seq
DB search
MDDDDSMHRLEGTDPDAQVGGLIVKKKSAASEQHVFRAPTPRTSLLGLDLLAAQKRKERE
SKEQADGCSDDRSTKKSKVSSFKDWEEGKSDSGSDDEDDDKDRHAKKESRKYRVTGSETP
SNPGGVSEEFRRRHQQREKDRREHGVYASSKEDKNREREKERSRDKGRDRRSERDERESS
YNRGSSSSRSERSERSERSQRDGWSERISRGNKRNEPLTPQNRPRDSFTPSRSNWEEDDS
GYGSSRLSQWESPSPAPSHKESERSERSHRSGRESERRDRSVRGRYPDDTPLPTPSYKYN
EWANDRKHSGSTPRLSQGKGKKDGEGGIMFDNEDEKEQWEDDQKQADRDWYMMDEGYDEF
NNPFTSTSDEYVKKREQIIQKQTQKRISARKRQINEDNERWETNRMLTSGVVQRLEVDED
FEEDNATKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLVRKHRE
QKERKKAQHKHWELAGTKLGDIMGIKKTEEEDSSGGKPVGEDGKVDYRAEQKFADHMKEK
TEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHED
GYTSYGLVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTLIKYMTDGI
LLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDKF
AAFFGNVPIFHIPGRTFPVDVLFSKTPQEDYVEAAVKQALQIHLSGMTGDILIFMPGQED
IEVTSDQIVERLEDLENAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSL
TVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQS
AYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGA
LDNTGALTPTGRMMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGREE
ESDQVREKFSVPESDHLTYLNVYMQWKNNNYSGIWCNEHFIHTKAMRKVREVRSQLKDIM
VQQRMNLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGY
TPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEISNM
EEEMTLAEEQLQSRREQQDRKNNTGSVKALKICTPGRKEEAPMTPRHTPARFGL
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatgactccatgcacaggctggaggggactgatccagatgctcaagttggt
ggactgatagtcaagaagaagagcgccgcctcagagcagcatgtttttcgggctcccacc
ccacgcacctctctgctgggcttggatctgctggcagcccagaaaaggaaggagcgtgag
agtaaggaacaggcagatggttgcagtgatgacagaagtactaagaaatcgaaggtttcc
tccttcaaggattgggaggaaggtaaaagtgattctgggtcagatgatgaagacgacgat
aaggacaggcacgctaagaaggagagcaggaagtatcgtgtgactggttctgagacgcct
tccaaccctggaggagtcagtgaagagtttcgtcgcagacaccagcagagagagaaggat
agacgtgagcatggagtctacgcctcctccaaagaggacaagaacagagaaagagagaaa
gaaaggagtagagataaagggagagatcgacggagtgaaagagatgagcgagagagcagc
tacaaccgtggcagcagcagcagccgatcggagcgcagtgagaggagtgagcgctcacag
agagatggctggtctgaacgcatcagccggggaaataagcgtaatgaaccccttacacca
cagaatcgccccagagattctttcactccctcccgctccaattgggaggaggacgacagt
ggttatggcagttcgcggctttcccagtgggagtctccatccccagccccttctcacaaa
gagtctgaacgctcagagcgaagccatcgctctggccgagagagtgagaggagagacagg
tcagtcagaggccgttaccctgacgacacacctctgcccaccccatcctacaagtacaat
gaatgggccaatgacaggaagcattcaggctctacacctcgtttatcccaaggaaaaggt
aaaaaagatggtgaaggaggaattatgtttgacaatgaggacgagaaagaacagtgggag
gatgaccagaagcaagctgacagagattggtacatgatggatgaaggctatgatgagttc
aacaacccgtttacttccacatctgatgaatatgtaaagaagagagagcagatcattcag
aagcagactcagaaacgaatatctgctcggaaacgacagatcaacgaggataatgagcgt
tgggagactaaccgtatgctgaccagtggtgtggtgcagcggctggaagtggatgaagac
tttgaagaagacaatgctactaaagttcacctcctggttcacaacctggtcccccccttt
cttgatgggagaatagtcttcactaaacagccagagcctgtcatccctgtgaaagatgcc
acttctgacatggccatcatctcccgaaagggcagccagcttgtccgtaaacatcgtgag
caaaaagaacgcaagaaggcacagcacaaacactgggaattggcagggaccaagttggga
gatatcatggggatcaagaagactgaggaagaagactcctctggaggcaaaccggtaggc
gaggacggcaaagtggactacagagcagagcagaaatttgcagaccacatgaaagagaag
actgaggccagcagtgagtttgctaagaagaagaccttactggagcagagacagtacctg
ccgatctttgccgtgagacagcaacttcttaacatcataagggacaacagcatcgtgatc
gttgtaggggagacgggaagtgggaaaaccactcagctgactcagtacctgcatgaagat
ggctacaccagctacggcctggtgggatgtactcaaccccgaagagtggctgccatgagt
gtggcgaagagagtcagcgaggagattggcaccaacctgggagaggaggtgggctatgca
attcgttttgaggactgcacatctgagaaaacattgataaagtacatgacagatggtatc
ctgctcagagagtcactgagggagtcagacctggatcactacagtgctgttatcatggac
gaggctcatgaacgctccttgaatactgatgtgctgttcggcctgctacgtgaggttgta
tcgcgacgcactgatttgaagctcatagttacttctgcaactatggactctgataaattt
gcagcattttttggcaatgtacccatattccacattcccggaagaacatttccagtagac
gtcttatttagcaagactcctcaggaggactatgtggaggcagcagttaagcaggccctt
cagatccacctcagtgggatgacaggagacatcctcatctttatgccaggacaggaggat
attgaggtgacatcagatcagattgtggagcgattggaggacttggagaacgccccacct
ctggctgtgctgcccatttattcccagctgccctctgatctccaggccaagatcttccag
aaggctcccgacggtgtaaggaaatgcattgttgctacaaacattgctgagacttccctc
actgtggatggaatcatgtttgttgtggattcgggatactgtaaacttaaggtattcaat
cctcgcattggaatggacgctctacaggtttatcccatcagtcaagctaatgcaaaccag
cggtcgggcagagcagggcgtacaggaccagggcagtgctataggctctacactcagagt
gcatataagaatgagatgcttaccaccaccataccagaaattcagagaaccaacctggcc
aatgtggtactgctcttgaagtccctgggcgttcaggatttgctcctcttccatttcatg
gatccaccacctgaagacaacatgctcaattccatgtaccagctctggatcttgggagcc
ctggacaacacaggtgctttgacaccaacggggcgaatgatggtggagtttccccttgac
cctgctttgtccaaaatgctgattgtgtcctgcgacatgggctgcagtgctgatatcctc
atcattgtctccatgttgtctgtgccggccatcttttacagacctaagggtcgtgaggag
gagagtgaccaggtgagggagaaattctcagtgccagagagtgaccacctgacctacctc
aacgtctacatgcagtggaagaacaataattactccggcatctggtgcaacgagcacttc
atccacacgaaggccatgcgcaaggtgcgtgaggtgcgctcccagttaaaggatatcatg
gtgcagcagaggatgaaccttatttcctgtggctcagactgggacatcatcaggaagtgc
atctgtgccgcttacttccaccaggctgccaagctcaagggaattggtgaatatgtgaac
gtgaggacaggcatgccatgtcacctccatcccaccagctccctgtttggtatgggctac
actccggactacatcatctaccacgagcttgtcatgaccaccaaggagtacatgcagtgt
gtgactgcagtggatggagagtggctggcagaacttggaccaatgttttacagcatcaaa
catgctggtaaaagcagacaggagaaccgtcggcgggccaaggaggagatcagcaacatg
gaggaggagatgacactggctgaggagcagctgcaatctcggcgagagcagcaggacagg
aagaacaacactggcagtgttaaggcactgaaaatctgcacaccaggaagaaaagaggag
gctccgatgacacccagacacaccccggcccgctttggactgtaa
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