Scomber scombrus (Atlantic mackerel): 133983656
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Entry
133983656 CDS
T10651
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133983656 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133983656 (smarcc1a)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133983656 (smarcc1a)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133983656 (smarcc1a)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133983656 (smarcc1a)
PBAF complex
133983656 (smarcc1a)
GBAF(ncBAF) complex
133983656 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
133983656
NCBI-ProteinID:
XP_062278795
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Position
7:complement(29675429..29705572)
Genome browser
AA seq
1135 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGGGGGTAVGRKKDGGPSTKFWEGSETISQLETVRLWIGK
HYKKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHI
LGSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIDQKQA
SKLKDTIKRHQGSITDDKSKATHHIYPSPSPQEEEEWLRPVLRKDKQVLVHWGLYPDSYD
TWVSVSEVDGDVEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVCFRQRVY
PKEEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEE
EDTEEDVSKDMDDSSAGASMEEGSMSKNANSKRDSENTPVKRGNVADSDDMEDDSVLSNG
KDDEDQGKAEVNRLIDASEDNVTEQTHHIIIPSYSSWFDYNCIHEIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVD
SDSRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQQQMPNFPGKDKDKAMAIDLQN
FGLRTDLYNKKKAKAVTSTREWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENTESSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEE
FSRVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPDEPEKTETTEPEKA
DTDTDSQQGDKAELKDEAEKPSESAEKSDKTEATDKVKKEGAETSEREEESEDGGEAKTA
PAEKDKEEAMETSSSDQEKDKEEKAAIDEGEEKRKKLEHDIGEGNIATAAAAALASAATK
AKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQ
AFHMEQLKYAEMKARQQMEQQAAAAAAAAAAAAQAQGQGQASGPGPHSGPPSSGMHHGGP
PPHHGGPHHGASGPHHGGPPTGHPGFPPMGHHPMGPHHPGQTGPIGPSQPMPTRMIPGPP
SAGPPPGGMPPMMPPRHPGAPNGMFPGPPAAQAEPVPAVPVVGPPAPTSGRVADN
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgactacggcaggcggaacgggctcgggcggaccggccaccggcccg
gtcggtggtggtggaggaaccgcagtgggaagaaaaaaagacggcggaccttctactaaa
ttctgggagggttcagagacgatatcgcagctagagacggtgcggctgtggatcggaaag
cactacaagaagtatgtccagaatgactccccctccagtaaatccttggcaggccttgtg
gtccagctgctgcagttccaggaggatgcttttggacgcagggttaacaatcctgctctt
accaaactacctgccaagtgtttcctggatttcaaggctggaggagctctgtgtcacatc
ctggggtcggtctacaagtttaagagcgagcagggctggcgtcggttcgacctgcagaat
ccgtcccggatggacaggaacgtggaaatgttcttaaatgtagagaagaacttggtgcag
aataactgcctgactcgacccactgtcttcctgtcgccggacattgaccagaaacaagcc
agtaagctcaaagacaccatcaaaaggcaccagggctccatcactgatgataaatcaaag
gccacccaccacatttatccttctccatcgccacaagaagaagaggagtggctgcgtcct
gtcctgaggaaagacaaacaggtgttggtgcactggggtctctacccagacagctacgat
acctgggtatcagtcagcgaggtggatggtgatgtggaggatcctcccagcactgacagg
ccgtggaaggttcatgctaagtgggttttagacaccgatgccttcaacgagtggatgaat
gaagaagactacgaggtggacgagaacaagaaaccagtctgcttccgccagagagtctac
ccgaaggaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaactctgcc
ggaaagaagaggagacgctcgccctcgccgcccagcactcctgcagaatcccgcaagaag
ggaggaaagaaggggaacccagggcctcactggaagcgacggggccacagaggagaagag
gaggacacggaggaggacgtgagtaaggacatggacgactcctcggccggtgccagcatg
gaagagggcagcatgtccaaaaatgcaaattcaaagagagacagtgaaaatactccagtg
aaaagagggaatgtggctgactcggatgacatggaggacgactctgtgctgtctaatgga
aaggacgacgaggatcagggcaaagctgaagtgaaccgactgatagacgccagcgaagac
aacgtgacagaacagacgcaccacatcatcatcccgagctacagctcttggtttgactac
aactgcatccatgaaattgagagaagagccctgcctgagttcttcaacggaaaaaacaag
tccaaaactccagagatatacctggcgtaccgcaacttcatgatcgacacgtatcggcta
aaccctcaagagtatctcacctccacctcctgccgcaggaacttgaccggagatgtctgc
gctatcatgagggtccatgcattcttggagcagtggggtttggtgaactatcaggttgat
tcagacagtcgccctctgcccatgggccccccacccacaccccacttcacggtgctggct
gacacaccctcaggcctcatgcccctgaaccaccgacctccaccgatcccccctcaacag
cagatgcccaacttcccaggcaaagacaaagacaaggccatggccatcgacctgcaaaac
ttcggccttcggacggacctttacaacaagaaaaaggctaaagccgtgacctccaccagg
gaatggaccgagcaggagactctactgctgctggaggctcttgagatgttcaaagacgac
tggaacaaagtgtcggagcacgttggttcacgcacccaagacgagtgtatcctgcacttc
ctgcggctccccatcgaggatccatacctggagaacaccgagtcctccctgggccctctt
gcctaccagcccatacccttcagccagtctggaaaccccgtcatgagcactgttgccttc
cttgcctctgtggtcgaccccagagtggcttctgctgctgccagggcagccctagaggag
ttctcccgcgtgcgtgaggaggtgccggctgaactggtggaggcccacgtgaaaaaggtg
caggaggcagccaggagcacgggcaaggtagaccccgccttcggcctggagagcagcggc
atcgctggcaccgccccagatgagccagaaaaaacagaaaccacagaaccagaaaaggcg
gacacggacacagactcccagcagggtgacaaggcggagttgaaggacgaggccgagaag
cccagtgagtccgcagagaagagcgacaagacggaggccacggacaaggtaaagaaggaa
ggagcggagacgtcggagcgtgaggaggagagcgaagacggaggagaggcgaagaccgct
ccagcagaaaaagacaaggaggaagcaatggagacgtcgtcctcggaccaggagaaagat
aaggaggagaaggcagctatagatgagggagaggagaagaggaagaagctggagcatgac
atcggagagggcaacattgcaactgcggccgctgctgccctcgcttctgctgccacaaaa
gccaagcacttggcggcggtggaggagaggaagatcaagtccctggtcgctctgctggtg
gagacccagatgaagaagctggagatcaagctgaggcacttcgaggagctcgagaccatc
atggaccgagagaaagaggctttggagcttcagaggcagcagctgctcaccgagcgtcag
gcgttccacatggagcagctcaaatacgccgagatgaaggcgaggcagcagatggagcag
caagctgccgccgctgctgctgccgccgccgccgccgctcaggctcaaggacagggacag
gcttcaggtcctggaccccactcagggcctccttcttcaggcatgcaccacggaggacct
ccacctcaccacggaggacctcaccatggagcatccgggccccaccacggagggccccca
accggccatcctggcttccctccgatgggtcaccaccccatgggtcctcaccacccagga
cagacaggaccaattggaccaagccagccgatgccaacccgtatgatccctggcccgccc
tctgctggcccccctcctggcggtatgcctcccatgatgcctccacgccaccccggagct
cccaacggcatgttcccaggcccaccagctgcacaggctgaaccggtacctgcagttccc
gttgttggtcctccggcgcccacgagtggacgcgtggctgacaactaa
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