Scomber scombrus (Atlantic mackerel): 133983786
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Entry
133983786 CDS
T10651
Symbol
smg9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133983786 (smg9)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133983786 (smg9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
AAA_16
URGCP_GTPase
AAA_30
DUF6079_1st
AAA_18
Motif
Other DBs
NCBI-GeneID:
133983786
NCBI-ProteinID:
XP_062278962
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All DBs
Position
7:14638996..14646071
Genome browser
AA seq
507 aa
AA seq
DB search
MSESGHSQPGMYGQGRRRRRRRGDRDAGPQGQNLSGPSRDREYQPRERRDGSEDPPGPLI
QKTPIILAKPPGERAKPSQNAPISGAPVLDKPIMLMKARDDGAKPGTPPEAAQPSGPGPS
KMEREGQRPTQPVYQIQNRGMAASASSSAVDPMVGQSKLLPPEKMKHSIKLVDDQMNWCD
SAMEYLRDQTDMLVVGVIGLQGTGKSTVMSLLSANTPEEDQRGYVFRAQTQEIKERGGNQ
STGIDFFITQERVIFLDTQPILSPSILDHLINNDRKLPPEYNLPYTYVEMQSLQIAAFLF
TVCHVVIVVQDWFTDLNLYRFLQTAEMLKPSTPSASHDSTGSSGIDDGAEYYPHIVFLQN
KARRDDFCPRNLKNMHMAVDKLMAHSHLKYKGTLSMLDCNIFPGLGQDYLDTEVNMFLLP
MQENDGEDNLTKAGLGTYPLFSLLPGYRGHPAFSTMVSKLRSQILAMPRCQLSHTILTEK
NWFHYAARIWDGVKKSSALSEYSRLLC
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtccggccacagtcagcccgggatgtacgggcagggacgcaggaggaggcga
cgccgaggggacagggatgctggacctcaggggcaaaacctgtccggacccagccgggac
cgagaataccaaccaagagaacgaagggatgggagcgaggatccaccaggcccacttata
cagaagacccccatcattctggcgaaaccacccggggaaagggccaagccatcacagaat
gcccccatcagtggagctccagtccttgacaagcccattatgctgatgaaagcccgggat
gatggagcaaagcctgggacccctccagaggctgctcagccctctggtcctgggccctcc
aagatggaaagggaagggcagcgacccacccagcctgtataccagatccaaaacagagga
atggccgcttctgcttcaagtagcgctgtggaccccatggttggccagtctaaactcctc
cctccagagaagatgaagcacagtattaaactggtggatgatcagatgaattggtgtgac
agtgccatggagtacttgagggaccagacagatatgttggtggtcggagtcattggcctg
caggggactgggaaatccactgtcatgtcactgttatctgccaacacccctgaagaggat
caaaggggatatgtattcagagcccagactcaagaaattaaggagagaggaggaaaccag
agcacagggatagattttttcatcacacaggaaagagtcatcttcttggacacacagcca
atactcagcccgtctattcttgaccacctcatcaacaacgatcgcaagttgcctccagag
tacaacctcccctatacatatgttgagatgcagtctcttcagattgccgccttcctgttt
acagtctgccatgtggtcatcgtggttcaagattggttcacggacttaaacctctacagg
tttcttcaaactgctgagatgctgaaaccttccactccatctgctagccatgacagcact
ggttcttcaggcattgatgatggagctgagtactatccccatatagtgtttctgcagaat
aaggctagacgggatgatttctgcccaaggaatctgaaaaatatgcatatggccgtggac
aaactaatggcccactctcatctcaaatacaaaggtacattgtccatgctagactgcaat
atcttccctggcctggggcaggattatctggacaccgaagtcaacatgttcctgcttcca
atgcaggagaatgacggggaagataatctgactaaagcaggcctgggaacataccccctg
ttctctctgcttccggggtacagaggacaccctgccttctccaccatggtttccaagctg
cgcagccaaatactggccatgccccgctgtcagctgtcacacaccattcttactgagaag
aactggtttcactatgcagctcgtatctgggatggggttaaaaagtcttcagccctctcc
gaatacagccgcctcctctgctaa
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