Scomber scombrus (Atlantic mackerel): 133983956
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Entry
133983956 CDS
T10651
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133983956 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133983956 (copb1)
Membrane trafficking [BR:
ssco04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
133983956 (copb1)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
133983956 (copb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
HEAT
HEAT_2
Cnd1
HEAT_EZ
Arm
MMS19_N
Motif
Other DBs
NCBI-GeneID:
133983956
NCBI-ProteinID:
XP_062279158
LinkDB
All DBs
Position
1:complement(21459179..21470142)
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AA seq
953 aa
AA seq
DB search
MTAAENVCYTLINVASDSEPPSEVSLKTDLEKGEIKAKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKESELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAVKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPTHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADV
LEFVREAIQRFDTLRPLIIEKMLEVFHAIKTVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSIGEIPIVENEIKRETGEVKPEDEVSAAPAQKLVTEMGTYVTQSALSSSRPSKKEEDRP
PLRGFLMDGDFYVAASLATTLTKVALRYVAIVQDKKKQNSFVAEAMLIMVTVLHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRKSLSHMLTVRLEEEKLSQKKESEK
RNVTVQADDPISFMQLTAKNEMTSKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNITDLNEYLQHILRSTNMKCLTPEKALSGFCGFMAANLYARSI
FGEDALANVSIEKPIHLGPDAPVNGHIRIRAKSQGMALSLGDKINLSQKKTNI
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgcagagaatgtgtgttacactctgatcaatgtcgcatctgactcagagccc
ccttctgaagtcagtctgaaaactgatctagaaaagggggagatcaaggcaaagaccgaa
gccctgaagaaggtcatcatcatgatactgaatggtgagaagttgccaggactgctgatg
accataatccgctttgtgctgccacttcaagaccacaccatcaaaaaactgctgctggtt
ttctgggagattgtccccaaaacaaccccagatggcaagctgcttcaggagatgatcctg
gtctgtgatgcctacagaaaggacctgcagcatcccaatgagttcatccgtggctccact
ctgcgtttcctgtgtaagctgaaggagtcagagttgctcgagccactcatgccagcaatc
cgagcctgcctggagcaccgacacagttacgtgcgccgcaatgctgtcctggccatttac
accatctacaggaactttgaacatcttatcccagatgctccagagttgatccatgatttt
cttgtgaacgagaaggatgccagctgcaagagaaatgctttcatgatgctgattcacgca
gatcaggatcgagctctggattacctcagcacatgtattgaccaggttcatacttttggc
gacattctccagctggtcattgtggagctgatttacaaagtgtgccatgcgaacccctct
gagcgtgctcgctttatccgttgcatctacaacctgctgcagtcctccagcccagctgtt
aagtatgaggctgctggcactcttgtaaccctctccagtgcacccacagctgttaaggct
gctgcccagtgctacattgatttgattatcaaggagagcgacaacaatgtgaagctgatt
gttctcgaccgcctgattgaactgaaggaacatcccactcacgaacgtgttctccaggac
ctcgtgatggacatccttcgtgttctcagcacccctgacctggaagtgagaaagaagacc
ttgcagctggcgctggaccttgtctcatctcgcaatgtagaagagttggtgatcgttttg
aagaaagaggtgatcaagacaaacaacgtaacagaacatgaagacactgataagtacaga
cagctgctggtgcgcactcttcactcctgcagtgtgcgcttccctgatatggcggccaat
gtaattcctgtgctgatggaattcctaagtgacactaatgaggcagctgctgctgatgtg
ctggagtttgtgcgggaagccattcagagatttgacaccttgagacccctcatcatcgag
aagatgctggaagtctttcacgccattaaaactgtcaaaatctacagaggagcactttgg
atcttgggagaatactgcagcaccaaggaagacatccagagtgtgatgacagaagtccgc
aggtcaataggagagatcccgattgtagagaatgagattaagagagagacaggagaggtg
aagccagaggatgaagtgagtgcagctccagcccagaagctggtgacagagatgggcacc
tatgtgacacagagtgccctcagctcctcaaggccttcgaaaaaagaggaggataggcct
ccactcagaggcttcctgatggatggagacttctatgtggcagcttccctggccactaca
ctgaccaaagtggccttgcgctatgttgctattgttcaagacaaaaagaaacaaaattcc
tttgttgcagaagccatgctgatcatggtcactgtactgcacctgggcaagtcctctctg
cccaagaagccaattacagatgatgatgtggaccgcatctcgctgtgcctcaaggtcctg
tcagagtgctcaccacttatgaatgacattttcaacaaggagtgtcgcaaatccctgtcc
catatgctgactgtcagactggaggaggagaagctgtcacagaagaaagagtctgagaag
cgtaacgtaacagtgcaggcggacgacccaatctccttcatgcagctgacagccaaaaat
gagatgacttctaaagaggaccagttccagctcagtctgctggctgctatgggcaacact
cagaggaaagaggctgctgatcccctggcttcaaaactcaacaaggtgacccagctgaca
ggattctcagatccagtttatgctgaagcctatgttcatgtcaaccagtacgacattgtt
ttggatgtgctggtggtcaaccaaacgagcgacactctccagaattgcaccctggagctc
gccactttaggtgatctcaagctggttgagaagccttcacctctaactctggctcctcat
gatttcgccaacatcaaggccaatgtcaaggtggcttctactgaaaatggcattatattt
ggtaacattgtctatgacgtgtcaggagctgcgagcgacaggaactgtgtcgtcctcagc
gacatccacattgacatcatggactacatccagccagcctcctgcacagatgcagaattc
agacagatgtgggctgagtttgaatgggaaaacaaggtgacagtaaacaccaacatcacg
gatctgaacgagtatctccagcatatcctcaggtccacgaacatgaagtgcctgactcct
gagaaggcactgtctggcttctgcggtttcatggccgccaacctttatgctcgttctatc
tttggggaagacgccctggctaatgtcagcatcgagaagcccatccacctggggcctgac
gcacctgtcaacggacacatacgcatcagagccaaaagtcaggggatggccttgagcctg
ggtgacaagatcaacctctcccaaaaaaagacaaatatctga
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