Scomber scombrus (Atlantic mackerel): 133983970
Help
Entry
133983970 CDS
T10651
Symbol
bcan
Name
(RefSeq) brevican core protein
KO
K06795
brevican
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssco00535
]
133983970 (bcan)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133983970 (bcan)
04091 Lectins [BR:
ssco04091
]
133983970 (bcan)
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
133983970 (bcan)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
133983970 (bcan)
Lectins [BR:
ssco04091
]
C-Type lectins
Lecticans
133983970 (bcan)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
EGF_2
Motif
Other DBs
NCBI-GeneID:
133983970
NCBI-ProteinID:
XP_062279170
LinkDB
All DBs
Position
7:complement(30086043..30119964)
Genome browser
AA seq
1342 aa
AA seq
DB search
MWDWWAGVMEELLRDKKNKTGLDVPLPVLLCAICLLVLPSSSTPNHESDDSKLLHVTIPT
SPPVDAVLGGNLTLPCLVSLAHPPPSPSTNGRHAVLSLPRIKWSVLTQGKEMEILVARGD
RVRVSEAYKDRASLLNYAYSPADLTLRLEILRQNDTGFYRCEVQQGLEDADDVTQVKVKG
VVFHYRDASSRYAFDFEQAREACEEIGARIASPEQLLAAYHSGYEQCDAGWLSDSSVRYP
IQMPREGCFGDMDGLPGVRNYGLLEPDELYDVYCYVENIEGEVFHGSAPQRFTFWEAKGY
CLSHGAELATTAQLYAAWNDGLHHCSPGWLADGSVRYPIVTPRERCGGGEPGVRTVYQYS
NQTGFPEAHTQHDVYCFRRDDSPYTESPQDFVATEPEDIGQDIVFVTNSAQDEVSMSGVT
AKGIEEDEFPTPSYDEKLLVTVDFHQSVTPPSQHQEHLSTKDAWEPVEKASYPESYQPAP
EENLDPHHDEFHIQTTFSPETDHVSTTDGTTAETVEPSTEHHISESNNVTESLDILAVNA
TSGEVANEILNSSSEVHPETELPTPQEDHTPAVDLEHATETETLHPSISYNVSAQPEEVS
AGVEVMSVMATSTHTEEPDVVSTTVLPSFDNSTSDSHPVEEGSGDERVNPDEETQNPVTH
SWVAIETSSSGPVSTPDASHHPTEDHSGVITESFVPIDHDDEDSNSTSEEAAAEDHIDHD
DEDSNSTSKDHIGHDDEDYNSTSKDHIDHDDEDSNSTSEDHIDHDGHIHSPQIPTAEAIT
VTADSHSTVFAPVLNSDLVTVSTSPATVTVSSAEFEATSYPEITFIPESNTSSEAEPLQD
KQEQEGLGGSTEVFLSSDQNITDSDREGSEGRDVREETPDSDEGSGESGDSPEGKPEMLL
SNPTLSTEHVSEGIDGEPETAAPPPLDIKITLIPHLTLTPGWEPESSSSAPQESRADREF
SAEPPVHEESDDGLLKEQEVVVEVNASSIHGHALEGSEGETSTDDPPVKSCTWHPDEEET
SSTLHGIDSHDMTIIAPTRVRYHVSEYFKKAEEEEEEEEEEAMVASLPAVKVSALRRGNS
CLENPCLNGGTCVEGESARCFCLPGYGGDLCQTDLEVCEPGWEKFQGFCYRHFAKRQSWE
SAEQHCRMCGGHLISVMTPEEQDYINDKYREYQWIGLNDRTIEGDFRWSDGNPLLYENWY
KGQPDSYFLSGEDCAVMVWHDGGHWSDVPCNYHLSYTCKKGVSSCGQPPEIPHTKVFGKK
RLRYETNTKVRYYCEEGFVQKLNPVIKCLPGGQWEEPLIICMSTHSVGEEPVNTTPNHHE
EVAEFTTTEKAAPLFWDIKWSV
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgtgggactggtgggccggtgtgatggaggagctgctgagggacaaaaaaaacaaaaca
ggactggatgttcctcttcctgtgctgctgtgtgccatctgtctcctcgtcctcccgtcg
tcctctacccccaaccacgagtcagatgattcgaagcttctccacgtgaccatccccacc
tctccgcctgtggacgcggtgctcggtggtaatctaacgttaccctgcctcgtgtctctg
gctcacccgccgccgtcgccctccaccaacggacgccacgccgtgctgtctctgccccgc
atcaaatggagtgtgctgactcagggcaaagagatggagatcctggttgcccgcggcgac
agggtgagagtcagcgaggcctacaaggaccgggcgtcgctgcttaattacgcctattcc
cccgccgacctcacgctgcggctggagattctgaggcagaacgacaccggcttctaccgc
tgcgaggtgcagcagggcctggaggacgctgacgacgtgacccaggttaaggtcaaaggg
gtggtgtttcattatcgcgatgcatccagccgctacgcctttgactttgagcaagccaga
gaggcctgtgaggagatcggggctcgtatcgcctctccggagcagctgctggccgcctac
cacagcggatacgagcagtgtgatgcaggatggctctcagacagctcagtcagatatccc
atccagatgccaagagagggctgtttcggggacatggatggactgccaggagtgaggaac
tatggactgttggagcctgatgagctgtatgacgtctactgctatgtggagaatattgag
ggtgaggtgtttcatggctccgccccccaacgtttcaccttctgggaggccaaaggctac
tgcctgagtcatggggcagagcttgccaccaccgctcagctatacgcagcctggaatgat
ggacttcaccactgcagcccgggttggctggcagacggcagtgtgcggtaccccatcgtc
acccctagagagcgctgtggaggcggggaacctggggtcagaacggtctatcaatacagc
aaccagacgggtttccctgaggctcacacacaacatgacgtctactgcttcagacgtgac
gacagcccctacactgaatctccccaggattttgttgccactgaaccagaggacattggc
caagacattgttttcgtgactaattctgcacaggacgaggtcagcatgagtggggtgaca
gcaaaagggattgaagaagatgagttcccaacaccgagttatgacgagaagctgctggtc
acggtcgactttcatcagtctgtcactccgccgtctcagcatcaagagcacctgtccacc
aaagatgcctgggaacctgtagagaaggccagctaccctgagtcctatcagccagcacct
gaagaaaacctcgatccacatcatgacgagtttcacatacaaacaacattttctccagag
actgatcacgtatccacaactgatgggacgactgcagagaccgtagagccctccacagaa
catcacatttctgagagtaacaacgtgactgaaagcctggatatactagctgttaatgca
acatctggagaagttgcaaatgagattctcaacagctcttcagaggtgcatccggagact
gagctccctactccacaagaggaccacactccagctgtcgacttggagcatgccactgaa
accgagacgctccacccaagcatctcttacaatgtttcagcacagcctgaagaggtcagc
gctggtgttgaggtgatgtcagtgatggcaacttcaacccacactgaagaaccagatgtt
gtgtccaccactgtgttgccatcttttgacaacagtacatctgatagccatccagtggaa
gaagggtccggagatgagagagtgaatccagatgaggaaacacaaaacccagtgactcac
agctgggttgctattgaaacctcttcttctgggccagtctctacgcctgatgctagtcat
catccaactgaagatcactcgggcgtaataacagagtccttcgtgccaatcgaccacgat
gatgaagactctaatagcacttcagaggaggcagcagcagaggatcacatcgaccatgat
gatgaagactctaatagcacttcaaaggatcacatcggccatgatgatgaagactataat
agcacttcaaaggatcacatcgaccatgatgatgaagactctaatagcacttcagaggat
cacatcgaccatgacggacacatccactctccacaaatcccaacagcagaagccatcaca
gtcacagcggactcacactctactgtattcgctcctgtcctaaacagcgacctggtcacc
gtgtcgacatccccggcaaccgtaaccgtgtcttccgcggagtttgaagctaccagctac
ccagagatcaccttcatcccagagagcaacacttcatctgaggctgaacctctgcaggac
aaacaggaacaggaaggattaggaggaagcacagaggtatttctcagctcggatcaaaac
atcacagacagcgatcgagagggaagcgagggaagggacgtcagagaggaaactccagac
tcagacgagggatcgggtgaatctggagatagcccagaagggaaaccagaaatgcttttg
tcaaacccgactctttctacggagcacgtttcggaggggattgacggtgagcctgaaaca
gctgcacctcctccattagatattaaaatcacactgatccctcatctgaccctcacacct
ggctgggaaccagagtcgtcttcctccgcgccgcaggagtctcgcgccgatcgggagttc
agcgccgagccgcctgttcatgaggaatctgatgacggattattaaaggagcaagaggtt
gtggtggaggtcaacgccagcagcatacatggacacgcattggagggaagtgagggggaa
accagcacagatgatcctccagttaaaagctgcacatggcatccggatgaagaggaaacc
tccagtactttgcacggcatagacagccatgatatgaccatcattgctcctacgcgtgtc
aggtaccacgtgtcagagtactttaaaaaagcggaggaggaggaggaggaggaggaggaa
gaggccatggtcgcctccctgcctgctgtcaaagtttctgctttaagacgaggaaactcc
tgcctggagaacccttgtttgaatggaggaacttgtgtcgaaggtgaatcggcgcggtgc
ttttgcctgcctggatatggaggagatttgtgccagacagacctggaggtgtgcgagcca
ggctgggagaagtttcagggcttctgttatcgtcactttgccaagcggcagagttgggag
tcggcggagcagcactgtcggatgtgtggcggacatctgatttctgtcatgacccccgag
gagcaggactacatcaatgacaaatacagagagtatcagtggattgggctcaatgacaga
accattgagggagatttccgctggtcggatggaaaccctctgctgtatgagaactggtac
aaaggccagcctgacagctacttcctgtccggtgaggactgcgcggtgatggtgtggcat
gacggcggccactggagcgacgtgccatgcaactaccacctgtcctacacatgcaagaag
ggcgtctcatcctgcggccaacctccagagattccccacactaaggtttttggtaagaag
cggttgcgttacgagaccaacaccaaggtgcgatactactgtgaggagggcttcgtgcag
aaactgaaccctgttatcaagtgcttgcctggcggccaatgggaggagcctctgattatc
tgcatgtctacccattcggtgggagaagagcccgttaacacaactcctaaccaccatgag
gaagtcgcggagttcacaacgacagagaaagcagctccactgttctgggacattaagtgg
agcgtctaa
DBGET
integrated database retrieval system
