Scomber scombrus (Atlantic mackerel): 133984267
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Entry
133984267 CDS
T10651
Symbol
abca7
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco02010
ABC transporters
ssco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
133984267 (abca7)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133984267 (abca7)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssco02000
]
133984267 (abca7)
Transporters [BR:
ssco02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
133984267 (abca7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
133984267
NCBI-ProteinID:
XP_062279433
LinkDB
All DBs
Position
8:21512087..21545022
Genome browser
AA seq
2374 aa
AA seq
DB search
MGFLRQLALLLWKNVTYRRRNKIQLIIELLWPLFLFVILISVRHSHPPYKQSQCHFPNKA
LPSAGTLPWIQGIICNINNPCFHSPTRGETPGQVGNFDNSIISRLFVDAQTVLSYSGNRS
FSGFQDLIWSVRRLGERPGAWPNLPVEEYLRPNETFSTFLLTNGSLSPRTVDQLMKARLN
LQVAMVGGQMQLKDLVCNADILGLFLTAGRGEANMTDLQTQLCDLPADILQEAERRFISQ
LDFTKFFTRDRLMANAGDLRVISQAVTSASQELAVLVDDFSSLSSFTEMSTALRLLSPEN
RTALPRESFRAFSRIMCGHPEVGGERIPSLNWYEDNDIKSFLGKNGTEDTNLYQDNTTTP
FCKSLIQGLESNPLSRIVWRGIKPLFIGKLLYTPDTPEVQQVMKEVNKTFEDLQILQELN
DAWIEVGPQIKNYMENSVEIQLLQDLLKRPEVAVLVNMRLENTSWTASRITRFLSTPSPD
TPQRPGAPPTWLDIYNDVSHTITMLAQITECFSLNKLEGFETEGQLVNRALELLEEREFW
AGVVFMLPNSSSPKLPSHITYKIRMDIDDVTRTNKIKDRFWDPGPAADPFNDMRYIWGGF
VYVQDLVERAVTRILSGVKQTTGIYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVA
MIIKGVVYEKEARLKETMRIMGLSTGTLWLSWFISSIVPFLVSAALLIAMLKWGDILPYS
DPTVVFFFLTAFATATIMQCFLISTFFSKANLAAACGGVIYFSLYLPYVLCVAWRDHLKT
THRVFASFLSPVAFGFGCEYFSQYEEQGVGIQWYNLHSSPVEGDSYSFTTSIFMLYVDAF
IYATAAWYIEAVFPGEYGIPRPWYFIFQVNYWGGVPLEVGMPIPPAPTEEDEDHIEPEPN
NLVLGVTIRNLVKIYKKGAKLAINHLNMKFYEGQITSFLGHNGAGKTTTISVLTGLFPPT
SGTVYIKGMDIRHDMDIIRRTLGVCPQHNVLFDILTVEEHVWFYGCLKGLSEAEVKAELD
TLLDDVGLLEKRHEQTKNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDL
LLKYRKDRTIILSTHYMDEAELLGDRIAIISQGKLCCCGSPLFLKTKLGSGYYLTVVKRA
GLDTSMPSSTSISTSTSTSTNKLPPLTKDSESSMSEDTGLGSEESSSYLAALLALAQHHI
PGARLVEESGREAVMNLPQTSAKDSSLAVFLAELDQRLNELGLSSYGLSDSTLEEIFLRV
AEETGVDAEPELQDEPSPSQQQSGQRVERQHAEEPETEPEETDPLSGDGQGGLPLTGWWL
TWQQLRALFIKRWLYARRSRRGFFAQIVLPAVFVLIALLFSLIVPPFGKYPSLQLQPWMY
GEQYTFYSNDAPGNPAMENLLEALLDQPGFGTKCIEKEEKENSMSPQCESERSSFFMRPQ
LSYSTWKMFSRGNWSKERPSPDCQCSTEEVRRMLPDCPQGAGGLPPPQIKRLTGDILQNL
TSYNVSDYLVKTYSQILKKSLKTKKWVNEFRYGGFSLGGSATQTLSQVHHVEDSILAIRT
RYQVPQNSSLDNLLNRLPDFLGGLNSQNNVKVWYNNKGWHSMVSFVNVMNNGLLRASLPP
GSERRKHGITAYNHPLNLTKEQLTEMAMMATSVDVLVSICVIFAMSFVPASFVLFLIEER
VSKAKHLQFVSGVKPILYWLANFTWDMLNYTVPATMVVLIFISFQQQSYVSETNLPALVL
LLLLYGWSITPLMYPASFVFSVPSTAYVFLTSINLFIGINGSIATFVLELFVDEHLNEVN
RILKKVFLIFPHFCLGRGLIDMAKNQAMADAFQRLGTKQTLDPLQWDFVGKNLFAMAAEG
VIFFIFTILLQYKFFIRYRPWWNEPEMPPLGPEDEDVARERERVKSGNAQADILTMIDLS
KVYKAGRKPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTPITCGEAFLNHYSVL
TEMERVHQLMGYCPQFDAISDLLTGREHLELYARLRGVPEESVNKVAQWGVKKLGLTQYA
EREAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCIVSVTKEGRAVV
LTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIILHLADTKADPDSCAIN
TYMKTSFPSIELKERHQNVLRYQLPSHDCCLARAFDMLANNYEELGIVDFSVSQTTLDQV
FVNFAKEQTDDDRLTDVVISNGTIQTNTQAGLCIQINPPTIQAPPSIKSLQPSTTPQQHK
KSPDRKPKEGTSKQAKSSKGKSKEGNKEKSSDTAMSRIPQPVTSRKSSSGSNSSYSGAQG
ETSKPSGSKHTGESSSKDPSALFIIGTNTQDSSL
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgggatttctcaggcagctcgctctcctgctctggaagaacgtcacataccgcaggaga
aacaagatccagctgatcatcgagctcctctggccgctcttcctcttcgtcatcctcatc
tctgttcgtcattctcaccctccttacaaacagagccaatgtcactttccaaacaaagcc
ttgccatcagcaggcaccttgccctggattcagggcattatctgcaacatcaacaatccg
tgcttccacagcccaacacgtggggagacaccgggccaagttggcaactttgacaattcc
ataatttctcgtctcttcgtggacgcccagacggttctgtcctacagtggaaaccggagc
ttctctggctttcaggatctgatatggagtgtacggaggctgggagagcgacctggagcc
tggccaaatctcccagtagaagaatacctgagacccaatgagacgttctccaccttcctg
ttgaccaatggcagcctgtcgccaaggacagtggaccagctgatgaaagctcgtctcaat
cttcaggttgctatggttggaggtcagatgcagctgaaggacttggtgtgtaacgcagac
attttaggactgtttctgacggcgggcagaggagaagcaaacatgacggacctgcagact
cagctgtgtgacctgccagctgacatcctgcaggaggccgagcgccgctttatctctcag
ctcgactttactaagttcttcacgagagaccgtctgatggccaacgctggcgacctcagg
gtcatcagccaagctgtcacctcagcctctcaggagctggctgtcctcgtagacgatttc
tcctctctctccagctttacggaaatgagcaccgcactccgacttctgtctccggagaat
cggaccgcgctgcccagggaaagtttccgggctttttcaaggatcatgtgtggtcacccc
gaggttggcggcgagcgaatcccatcactcaactggtatgaagacaatgacatcaagtcc
ttcttgggcaaaaatggaactgaggacaccaacctgtaccaggacaacaccaccactcca
ttctgtaaaagtctgatccagggtctggagtccaaccctctgtctcgcattgtgtggcga
ggaatcaaacctctgttcatcggaaaactgctgtacacgccagacactcctgaagtacaa
caagtcatgaaagaggtgaacaagactttcgaggacctgcagatcctccaggagctgaat
gacgcctggattgaagtgggaccacaaatcaagaattacatggagaacagtgtggagatt
cagcttctgcaggatttgttaaagcggcctgaggtcgcagtgctggttaacatgcgtctg
gagaacacatcctggacggcctcgcggatcacacgtttcctgtccacaccctcgccagac
acccctcagaggcctggagcacctcccacctggctggacatctacaacgacgtcagccac
accatcaccatgctcgcacaaatcacagagtgtttctccctgaacaaactggaggggttt
gagactgaaggtcagttggtcaacagggcgctggagctactggaggagagggagttttgg
gcaggtgtggttttcatgcttcccaactcctcgtctcctaaactgccgtctcacatcacc
tacaagatccgaatggatattgatgatgttacccgcaccaataaaatcaaggacaggttt
tgggatcctggtccagcagcagacccgttcaacgacatgcgctacatttggggcggcttt
gtgtatgtccaggacctggtggagagagctgtgacccgcatcctgagcggagttaaacaa
acaaccggcatctacatccagcagatgccatacccctgctatgtggatgatgttttcctc
cgagtgctgaaccgctctttgccgcttttcatgacactggcctggatctactcagtggcc
atgatcatcaagggcgtggtgtacgagaaggaggcgaggctgaaggaaaccatgaggatt
atgggtctgagtacgggaacgctgtggctcagctggttcatcagcagcattgttcctttc
ctggtttctgcagcgctccttattgctatgctcaagtggggggacatcctgccatacagc
gacccgactgttgtgtttttctttctgacggcatttgccaccgctacgatcatgcagtgt
ttcctcatcagcaccttcttctccaaggccaacctagctgctgcctgcgggggcgtcata
tacttcagcctctacctgccctatgtactatgtgtggcctggagagaccacctcaagacc
actcacagagtctttgctagtttcctctctcctgtggcatttgggttcggctgtgagtac
ttctctcagtatgaggaacaaggggtgggcatccagtggtacaacctgcactcgagtcct
gtggaaggagattcttacagtttcactacctctatattcatgctttatgtagatgccttc
atctacgctactgcagcctggtacatcgaagccgtgttccctggtgaatatgggatcccg
agaccctggtacttcatcttccaggtaaactactggggtggagtccccctggaggtgggc
atgccaattccccctgcgcccacagaagaggatgaagatcacattgaaccagaacccaat
aatctggtccttggagtgaccataagaaacctggtgaaaatctacaagaagggagccaag
ctggccatcaaccacctcaacatgaagttctacgaggggcagatcacctcatttctcggc
cacaacggagccggcaagactacgaccatatctgtcctgactggactgttcccgcctacc
tcggggacagtgtatatcaaggggatggacatccgccatgacatggacatcatccggagg
acactgggagtttgtccacagcataatgttctgttcgacattctaacggtggaggagcac
gtgtggttttatgggtgtctgaaaggtttgtctgaagcagaggtgaaggctgagctggac
actctgctggacgacgtcggcctgctggaaaaacgacatgaacagaccaagaacctctct
ggtgggatgcagaggaagctgtctgttgcaatagcgtttgtcggaggctccaaggtggtt
gttctggatgaacctacagctggtgttgacccttactcccgccgagggatctgggatctg
ttgctcaaataccgtaaagatcggaccatcatcctgtccactcattacatggacgaggcg
gagctgctgggtgaccgcatcgccatcatctctcaggggaagttgtgctgctgtggctcg
ccactctttctgaaaactaaactgggatctggctactacctcactgtggtcaagagagca
ggactggacaccagcatgcccagcagtaccagtatcagcaccagtaccagtaccagcacc
aacaagctgcctcctcttaccaaggacagcgagtcctccatgagtgaagacacagggctg
ggaagtgaggagagcagctcatacctggcagctttgctcgccctggcgcagcaccacatc
ccgggtgcgaggctggtggaggagtcggggcgtgaggcagtcatgaacctgccgcagacg
tccgccaaggacagcagcctggctgtcttcctggccgaactggatcagaggctgaatgag
ctgggcctcagcagctacggcctgtcagatagcacactggaagaaatctttctgcgagtt
gcagaggaaaccggtgtggatgctgaaccagagctgcaggatgaaccttcccccagtcag
cagcaatcagggcagcgagtggagagacaacatgctgaagaaccagagacagaacctgag
gaaacagacccgctaagcggagatggccaaggcgggttgcccctgaccggatggtggctg
acctggcagcagctgagagctctcttcatcaaacgctggctttacgctcgcaggagccgc
agaggtttcttcgctcagattgttctgcctgctgtgtttgtgctcatcgcactgctcttc
agcctcatcgtaccgccgtttgggaagtacccttctctgcagctccagccctggatgtat
ggagagcagtataccttctatagcaacgatgcccctggaaacccggccatggagaacctg
ctggaggccctgcttgaccagccaggttttggtaccaagtgcatagaaaaagaggaaaag
gaaaacagcatgagccctcagtgtgaaagcgagcggagcagcttcttcatgcggccacag
ttgtcatactccacctggaaaatgttcagcagaggcaactggagcaaagagagaccctct
cctgactgtcagtgcagcacagaggaagtccgccggatgctcccagactgtccacagggt
gctggtggacttccgcctccacagatcaagaggctaactggagacatcctccaaaatctg
acaagttataacgtctctgattatctggtgaagacctactctcagatccttaagaaaagc
ctgaaaaccaagaagtgggtgaatgaattcagatatggaggcttctctctcggaggcagc
gccacccagactttatctcaggtgcatcatgtcgaagactcgatcttggcaatcaggact
cgttaccaagttccacagaatagttcactggacaatctcctaaacagactgccagatttt
ctgggaggactaaacagtcagaacaatgtgaaggtgtggtacaataacaaaggttggcat
tctatggtgtcatttgttaacgtgatgaacaacggcctgctgagagccagcctgccacca
ggttcagagaggagaaaacacggcatcactgcctacaaccacccactcaaccttaccaag
gagcaactcaccgaaatggccatgatggccacatcggtggatgttctggtttctatctgt
gtgatatttgccatgtcctttgtgccggccagctttgtcctttttctgattgaagagcga
gtcagcaaagccaaacaccttcagtttgtcagcggggtcaaaccaatcctctactggctg
gccaactttacctgggacatgcttaactacaccgtccccgccaccatggtggtgctgatc
ttcatcagtttccaacagcagtcgtacgtctctgagaccaacctgcctgctctcgtcctg
ctcctcctgctctatgggtggtccatcactcctttgatgtacccagcatcctttgtgttc
tccgttcccagtacggcctatgtctttctgacctccatcaacctcttcatcgggatcaat
ggcagcatcgccacattcgtgttggagctgtttgtagacgagcatttgaatgaggtgaac
aggatcctgaagaaggtgttcctcatattccctcatttctgtctcggacgaggactcatc
gacatggccaagaaccaggccatggctgacgcctttcagaggctgggcaccaaacagact
ctggaccctcttcagtgggactttgtagggaagaacctcttcgcgatggcagctgaaggt
gttatctttttcatctttaccatactgctgcagtacaagttcttcattcgctataggcca
tggtggaacgagcctgagatgcctcctctcggcccagaagatgaggacgtggcaagggag
agagagagggtcaaaagtggcaacgcccaagctgacatcctcaccatgatagatctcagc
aaggtttacaaagcaggcaggaagccggcagtggatcgtctctgtctggggattcctcgt
ggcgagtgttttggcctgctgggagtgaatggagcagggaagacttctacatttcgcatg
ctgacaggagacacgcccatcacctgtggagaggctttcctcaaccactacagtgtgctg
acagagatggagcgagtccaccagctgatgggttactgtccacagtttgatgccatcagc
gacctgctgacaggtcgggaacatctggagctttacgcccgcctgcgaggggtgccagag
gagtctgtcaacaaggtggctcagtggggggtgaagaagctgggactcacccagtacgct
gagcgggaggccggaggctacagtggaggcaacaagaggaaactctccactgccatctcc
ctcattggggctccgcctgttatattcctggacgagcccaccactggtatggatccaaag
gctaaaagatttctgtggaattgcatcgtcagcgtcaccaaagagggaagagctgtagtt
ctcacctcccacagcatggaggaatgtgaggctctctgcaccagaatggccatcatggtc
aacggcaggttccagtgtctcggatctgtacaacacctgaagaacaggtttggtgatggc
tacaccatcattctccatctggcagacaccaaagccgacccagactcgtgcgcgatcaac
acctacatgaagacatccttccccagtatcgagctgaaggagcgccaccagaacgtgctg
cggtaccagctgccctcacacgactgctgtctggctcgtgcctttgatatgctggccaat
aactatgaggagctgggcatcgttgacttttctgtctcacagactactctggaccaggtg
tttgtcaactttgccaaagagcagactgatgacgatcgcctcacagatgtagtcatcagc
aatgggacaatacagaccaacacacaggctggcctgtgcatccagatcaacccccccacc
atccaagcaccgccatcaatcaaatcccttcagcccagtacgaccccacagcagcacaag
aaatcacctgacaggaaaccaaaagagggtacatcaaaacaagctaaaagtagtaaagga
aagtctaaagaaggcaacaaagagaaaagcagcgacacggcgatgagcagaatacctcaa
ccagtgacgagccggaagagcagcagtggctcaaacagcagctatagtggtgctcaggga
gaaaccagtaaacccagtgggtccaaacacacaggagagagctccagcaaagatccttct
gcactctttataatcggcaccaacacacaagacagctcgctgtga
DBGET
integrated database retrieval system
