Scomber scombrus (Atlantic mackerel): 133984662
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Entry
133984662 CDS
T10651
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133984662 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
133984662 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133984662 (lsm4)
03041 Spliceosome [BR:
ssco03041
]
133984662 (lsm4)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133984662 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
133984662 (lsm4)
Spliceosome [BR:
ssco03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133984662 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
133984662
NCBI-ProteinID:
XP_062280088
LinkDB
All DBs
Position
8:complement(22026487..22030338)
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AA seq
155 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGTQQNKQQGKGRGGGGAGRGLFGGRGRGM
TGTGRGQQQQPQQQQQQQQQQDKKQGKPQGMKNQH
NT seq
468 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctcactgctgaagactgcccagaaccatcccatgctggtggagctgaag
aatggagagacgtacaacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacctcgagggatggagataagttctggaggatgcctgagtgctac
atccgaggaagcaccataaagtacctgcgaatccctgacgagatcatcgacatggtgaag
gaggaggtggtgtcgaagggtcgtgggcgtggaggcacccagcagaacaaacagcagggc
aaaggaagaggaggaggaggagccggccgaggtctctttggcggtcgtggcagaggaatg
accggaactggtcggggccagcagcaacagccgcagcagcagcagcagcagcagcagcag
caggataagaaacaaggcaaaccacaggggatgaagaaccagcactga
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