Scomber scombrus (Atlantic mackerel): 133984719
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Entry
133984719 CDS
T10651
Symbol
her6
Name
(RefSeq) hairy-related 6
KO
K06054
hairy and enhancer of split 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03460
Fanconi anemia pathway
ssco04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
133984719 (her6)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
133984719 (her6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133984719 (her6)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133984719 (her6)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
133984719 (her6)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
133984719 (her6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hairy_orange
HLH
bHLH_NCOA
Spectrin_1st_PEPL
Motif
Other DBs
NCBI-GeneID:
133984719
NCBI-ProteinID:
XP_062280160
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Position
8:18495096..18496892
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AA seq
277 aa
AA seq
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MPADMMEKTSSSPVAATPASMNTTPDKPKTASEHRKSSKPIMEKRRRARINESLGQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALNTDPTVLGKYRAGFSECMNE
VTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMNYPSQHQHQHQLPSTAGPTHPSFGQSM
VQIPSSPPQVLPMNAVPCKGGSSPTSLSSDATKVYGGFQIVPATDGQFAFLIPNAAFAPN
GPVIPVYANSVSTPVPVPAAVSPGAPSGNSDSVWRPW
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgatatgatggaaaaaacctcatcctctccggttgctgcaaccccggcaagc
atgaacacgactcctgataaacccaagacagcttctgagcatagaaagtcatccaagcca
attatggaaaagaggagacgagccagaatcaacgaaagcttgggacagctgaaaaccctc
atcctggatgcgctcaaaaaagatagctccagacactccaaactggagaaggcggacatc
ctggagatgacggtgaagcatctgcggaacctccagagggctcagatgaccgctgcgcta
aataccgatcccacagtcttgggaaaataccgtgccggtttcagcgagtgcatgaatgaa
gtcacccggttcctctccacctgcgaaggtgtcaataccgaggtcaggacgcggctgctc
ggccaccttgccaactgcatgacccagatcaacgccatgaactaccccagccagcatcag
caccaacatcagctcccctccaccgccgggccaacccacccctccttcggccagtccatg
gtgcagattcccagctcacctccgcaagtcctgcccatgaacgcggtgccctgtaaaggg
ggatcctcgccgaccagtttatcctcagacgccacgaaagtgtacggcggtttccaaatt
gtgcctgccacagacggacagtttgctttcctcatacccaatgcagcatttgcgccaaac
ggccccgttattcctgtgtacgccaacagcgtcagcacgccggtccctgtgcccgctgcg
gtttctcccggagccccgtcaggcaactcggattcagtgtggcgaccctggtga
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